RNA–Protein interactions for RNA: ENST00000216106.5

HMGXB4-201, Transcript of HMG-box containing 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGXB4, Length 4,047 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-201ENST00000216106 NISCHQ9Y2I1 1504 aa17.31■□□□□ 0.36
HMGXB4-201ENST00000216106 CCDC180Q9P1Z9 1646 aa14.9□□□□□ -0.02
HMGXB4-201ENST00000216106 ZCCHC6Q5VYS8 1495 aaKnown RBP14.6□□□□□ -0.07
HMGXB4-201ENST00000216106 SHROOM4Q9ULL8 1493 aa14.51□□□□□ -0.09
HMGXB4-201ENST00000216106 DCAF8L2P0C7V8 631 aa14.36□□□□□ -0.11
HMGXB4-201ENST00000216106 DCAF1Q9Y4B6 1507 aa14.23□□□□□ -0.13
HMGXB4-201ENST00000216106 SUPT5HO00267 1087 aaKnown RBP14.09□□□□□ -0.15
HMGXB4-201ENST00000216106 ABCC9O60706 1549 aa13.96□□□□□ -0.17
HMGXB4-201ENST00000216106 MYO15BQ96JP2 1530 aa13.92□□□□□ -0.18
HMGXB4-201ENST00000216106 SCRIBQ14160 1630 aa13.88□□□□□ -0.19
HMGXB4-201ENST00000216106 NACADO15069 1562 aa13.81□□□□□ -0.2
HMGXB4-201ENST00000216106 RB1CC1Q8TDY2 1594 aa13.64□□□□□ -0.23
HMGXB4-201ENST00000216106 CHIC1Q5VXU3 224 aa13.57□□□□□ -0.24
HMGXB4-201ENST00000216106 RSF1Q96T23 1441 aaPredicted RBP13.57□□□□□ -0.24
HMGXB4-201ENST00000216106 CECR2Q9BXF3 1484 aa13.5□□□□□ -0.25
HMGXB4-201ENST00000216106 UNC13AQ9UPW8 1703 aa13.47□□□□□ -0.25
HMGXB4-201ENST00000216106 MROH2BQ7Z745 1585 aa13.43□□□□□ -0.26
HMGXB4-201ENST00000216106 WIZO95785 1651 aa13.37□□□□□ -0.27
HMGXB4-201ENST00000216106 BAZ1AQ9NRL2 1556 aaPredicted RBP13.33□□□□□ -0.28
HMGXB4-201ENST00000216106 BICRAQ9NZM4 1560 aa13.27□□□□□ -0.29
HMGXB4-201ENST00000216106 SMARCA4P51532 1647 aa13.26□□□□□ -0.29
HMGXB4-201ENST00000216106 PABPN1Q86U42 306 aaKnown RBP eCLIP13.26□□□□□ -0.29
HMGXB4-201ENST00000216106 TOP2AP11388 1531 aaKnown RBP13.16□□□□□ -0.3
HMGXB4-201ENST00000216106 TRIM41Q8WV44 630 aa13.16□□□□□ -0.3
HMGXB4-201ENST00000216106 LOC105371045A0A1W2PR82 267 aa13.14□□□□□ -0.31
HMGXB4-201ENST00000216106 EIF4G1Q04637 1599 aaKnown RBP13.09□□□□□ -0.31
HMGXB4-201ENST00000216106 SMARCA2P51531 1590 aa13.08□□□□□ -0.32
HMGXB4-201ENST00000216106 CCDC88BA6NC98 1476 aa13.07□□□□□ -0.32
HMGXB4-201ENST00000216106 PEG3Q9GZU2 1588 aa13.02□□□□□ -0.32
HMGXB4-201ENST00000216106 FAM9AQ8IZU1 332 aaPredicted RBP13.02□□□□□ -0.33
HMGXB4-201ENST00000216106 ABCC8Q09428 1581 aa12.96□□□□□ -0.33
HMGXB4-201ENST00000216106 ATAD2BQ9ULI0 1458 aa12.96□□□□□ -0.34
HMGXB4-201ENST00000216106 BAZ1BQ9UIG0 1483 aaKnown RBP12.92□□□□□ -0.34
HMGXB4-201ENST00000216106 EHMT2Q96KQ7 1210 aa12.91□□□□□ -0.34
HMGXB4-201ENST00000216106 PCGF6Q9BYE7 350 aa12.87□□□□□ -0.35
HMGXB4-201ENST00000216106 WRNQ14191 1432 aaPredicted RBP eCLIP12.77□□□□□ -0.37
HMGXB4-201ENST00000216106 HMGXB3Q12766 1538 aa12.76□□□□□ -0.37
HMGXB4-201ENST00000216106 SOGA1O94964 1423 aa12.76□□□□□ -0.37
HMGXB4-201ENST00000216106 NCAPD3P42695 1498 aa12.75□□□□□ -0.37
HMGXB4-201ENST00000216106 SYNJ1O43426 1573 aa12.73□□□□□ -0.37
HMGXB4-201ENST00000216106 RUSC2Q8N2Y8 1516 aa12.71□□□□□ -0.37
HMGXB4-201ENST00000216106 TRIM26Q12899 539 aaPredicted RBP12.7□□□□□ -0.38
HMGXB4-201ENST00000216106 HRCP23327 699 aa12.68□□□□□ -0.38
HMGXB4-201ENST00000216106 EEA1Q15075 1411 aa12.67□□□□□ -0.38
HMGXB4-201ENST00000216106 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.39
HMGXB4-201ENST00000216106 TOP2BQ02880 1626 aa12.61□□□□□ -0.39
HMGXB4-201ENST00000216106 CC2D2AQ9P2K1 1620 aa12.6□□□□□ -0.39
HMGXB4-201ENST00000216106 CEP162Q5TB80 1403 aa12.59□□□□□ -0.39
HMGXB4-201ENST00000216106 BIVM-ERCC5R4GMW8 1640 aa12.58□□□□□ -0.39
HMGXB4-201ENST00000216106 CFTRP13569 1480 aa12.58□□□□□ -0.4
HMGXB4-201ENST00000216106 TNIKQ9UKE5 1360 aa12.57□□□□□ -0.4
HMGXB4-201ENST00000216106 GOLGA3Q08378 1498 aa12.57□□□□□ -0.4
HMGXB4-201ENST00000216106 UBTFP17480 764 aaKnown RBP12.57□□□□□ -0.4
HMGXB4-201ENST00000216106 PPARGC1BQ86YN6 1023 aaKnown RBP12.57□□□□□ -0.4
HMGXB4-201ENST00000216106 PRDM2Q13029 1718 aa12.54□□□□□ -0.4
HMGXB4-201ENST00000216106 KIF21BO75037 1637 aa12.54□□□□□ -0.4
HMGXB4-201ENST00000216106 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
HMGXB4-201ENST00000216106 CUX1P39880 1505 aa12.53□□□□□ -0.4
HMGXB4-201ENST00000216106 CADPSQ9ULU8 1353 aa12.48□□□□□ -0.41
HMGXB4-201ENST00000216106 RAPGEF2Q9Y4G8 1499 aa12.48□□□□□ -0.41
HMGXB4-201ENST00000216106 TTBK1Q5TCY1 1321 aaPredicted RBP12.43□□□□□ -0.42
HMGXB4-201ENST00000216106 CLIP1P30622 1438 aa12.41□□□□□ -0.42
HMGXB4-201ENST00000216106 KIF27Q86VH2 1401 aa12.4□□□□□ -0.42
HMGXB4-201ENST00000216106 PRXQ9BXM0 1461 aa12.39□□□□□ -0.43
HMGXB4-201ENST00000216106 ERICH3Q5RHP9 1530 aa12.38□□□□□ -0.43
HMGXB4-201ENST00000216106 RANGAP1P46060 587 aaPredicted RBP12.38□□□□□ -0.43
HMGXB4-201ENST00000216106 FANCD2Q9BXW9 1451 aa12.37□□□□□ -0.43
HMGXB4-201ENST00000216106 NESP48681 1621 aa12.36□□□□□ -0.43
HMGXB4-201ENST00000216106 FGD5Q6ZNL6 1462 aa12.35□□□□□ -0.43
HMGXB4-201ENST00000216106 CUX2O14529 1486 aa12.34□□□□□ -0.43
HMGXB4-201ENST00000216106 VPS8Q8N3P4 1428 aa12.32□□□□□ -0.44
HMGXB4-201ENST00000216106 ZEB1P37275 1124 aaPredicted RBP12.29□□□□□ -0.44
HMGXB4-201ENST00000216106 DNMBPQ6XZF7 1577 aa12.29□□□□□ -0.44
HMGXB4-201ENST00000216106 DNAJC5BQ9UF47 199 aa12.28□□□□□ -0.44
HMGXB4-201ENST00000216106 LAMC3Q9Y6N6 1575 aa12.28□□□□□ -0.44
HMGXB4-201ENST00000216106 TOPBP1Q92547 1522 aa12.27□□□□□ -0.45
HMGXB4-201ENST00000216106 IGF1RP08069 1367 aa12.27□□□□□ -0.45
HMGXB4-201ENST00000216106 ARAP1Q96P48 1450 aa12.25□□□□□ -0.45
HMGXB4-201ENST00000216106 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.25□□□□□ -0.45
HMGXB4-201ENST00000216106 POLA1P09884 1462 aaPredicted RBP12.24□□□□□ -0.45
HMGXB4-201ENST00000216106 RAD54L2Q9Y4B4 1467 aa12.24□□□□□ -0.45
HMGXB4-201ENST00000216106 APLP2Q06481 763 aa12.23□□□□□ -0.45
HMGXB4-201ENST00000216106 CARMIL1Q5VZK9 1371 aa12.22□□□□□ -0.45
HMGXB4-201ENST00000216106 URB2Q14146 1524 aaKnown RBP12.21□□□□□ -0.45
HMGXB4-201ENST00000216106 ABCA10Q8WWZ4 1543 aa12.2□□□□□ -0.46
HMGXB4-201ENST00000216106 CCER1Q8TC90 406 aaPredicted RBP12.2□□□□□ -0.46
HMGXB4-201ENST00000216106 KIF21AQ7Z4S6 1674 aa12.19□□□□□ -0.46
HMGXB4-201ENST00000216106 ARHGAP35Q9NRY4 1499 aa12.19□□□□□ -0.46
HMGXB4-201ENST00000216106 PDS5BQ9NTI5 1447 aa12.18□□□□□ -0.46
HMGXB4-201ENST00000216106 WDR97A6NE52 1622 aa12.16□□□□□ -0.46
HMGXB4-201ENST00000216106 CUL7Q14999 1698 aa12.12□□□□□ -0.47
HMGXB4-201ENST00000216106 HNRNPUL2Q1KMD3 747 aaKnown RBP12.12□□□□□ -0.47
HMGXB4-201ENST00000216106 KANK4Q5T7N3 995 aaPredicted RBP12.11□□□□□ -0.47
HMGXB4-201ENST00000216106 ABCA5Q8WWZ7 1642 aa12.1□□□□□ -0.47
HMGXB4-201ENST00000216106 TDRD9Q8NDG6 1382 aaKnown RBP12.1□□□□□ -0.47
HMGXB4-201ENST00000216106 CTTNBP2Q8WZ74 1663 aa12.07□□□□□ -0.48
HMGXB4-201ENST00000216106 GAPVD1Q14C86 1478 aa12.07□□□□□ -0.48
HMGXB4-201ENST00000216106 TARBP1Q13395 1621 aaKnown RBP12.05□□□□□ -0.48
HMGXB4-201ENST00000216106 P3H3Q8IVL6 736 aa12.05□□□□□ -0.48
HMGXB4-201ENST00000216106 TIAM1Q13009 1591 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms