RNA–Protein interactions for RNA: ENST00000035307.6

CHPF2-201, Transcript of chondroitin polymerizing factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHPF2, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-201ENST00000035307 NISCHQ9Y2I1 1504 aa23.7■■□□□ 1.38
CHPF2-201ENST00000035307 DCAF8L2P0C7V8 631 aa22.5■■□□□ 1.19
CHPF2-201ENST00000035307 SHROOM4Q9ULL8 1493 aa21.66■■□□□ 1.06
CHPF2-201ENST00000035307 SUPT5HO00267 1087 aaKnown RBP21.26■□□□□ 0.99
CHPF2-201ENST00000035307 ABCC9O60706 1549 aa20.43■□□□□ 0.86
CHPF2-201ENST00000035307 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
CHPF2-201ENST00000035307 PABPN1Q86U42 306 aaKnown RBP eCLIP19.99■□□□□ 0.79
CHPF2-201ENST00000035307 FAM9AQ8IZU1 332 aaPredicted RBP19.97■□□□□ 0.79
CHPF2-201ENST00000035307 ZCCHC6Q5VYS8 1495 aaKnown RBP19.69■□□□□ 0.74
CHPF2-201ENST00000035307 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
CHPF2-201ENST00000035307 SCRIBQ14160 1630 aa19.52■□□□□ 0.71
CHPF2-201ENST00000035307 PCGF6Q9BYE7 350 aa19.5■□□□□ 0.71
CHPF2-201ENST00000035307 TRIM41Q8WV44 630 aa19.5■□□□□ 0.71
CHPF2-201ENST00000035307 RANGAP1P46060 587 aaPredicted RBP19.48■□□□□ 0.71
CHPF2-201ENST00000035307 TTBK1Q5TCY1 1321 aaPredicted RBP19.47■□□□□ 0.71
CHPF2-201ENST00000035307 CHIC1Q5VXU3 224 aa19.4■□□□□ 0.7
CHPF2-201ENST00000035307 LOC105371045A0A1W2PR82 267 aa19.37■□□□□ 0.69
CHPF2-201ENST00000035307 PPARGC1BQ86YN6 1023 aaKnown RBP19.23■□□□□ 0.67
CHPF2-201ENST00000035307 UBTFP17480 764 aaKnown RBP19.03■□□□□ 0.64
CHPF2-201ENST00000035307 CECR2Q9BXF3 1484 aa18.94■□□□□ 0.62
CHPF2-201ENST00000035307 RB1CC1Q8TDY2 1594 aa18.89■□□□□ 0.61
CHPF2-201ENST00000035307 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
CHPF2-201ENST00000035307 ATP1B4Q9UN42 357 aaPredicted RBP18.83■□□□□ 0.61
CHPF2-201ENST00000035307 NACADO15069 1562 aa18.82■□□□□ 0.6
CHPF2-201ENST00000035307 DCAF1Q9Y4B6 1507 aa18.72■□□□□ 0.59
CHPF2-201ENST00000035307 APLP2Q06481 763 aa18.69■□□□□ 0.58
CHPF2-201ENST00000035307 HRCP23327 699 aa18.61■□□□□ 0.57
CHPF2-201ENST00000035307 MROH2BQ7Z745 1585 aa18.6■□□□□ 0.57
CHPF2-201ENST00000035307 CCER1Q8TC90 406 aaPredicted RBP18.59■□□□□ 0.57
CHPF2-201ENST00000035307 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.56
CHPF2-201ENST00000035307 TRIM26Q12899 539 aaPredicted RBP18.49■□□□□ 0.55
CHPF2-201ENST00000035307 ITGAEP38570 1179 aa18.41■□□□□ 0.54
CHPF2-201ENST00000035307 WIZO95785 1651 aa18.38■□□□□ 0.53
CHPF2-201ENST00000035307 P3H3Q8IVL6 736 aa18.37■□□□□ 0.53
CHPF2-201ENST00000035307 CSRNP3Q8WYN3 585 aa18.33■□□□□ 0.53
CHPF2-201ENST00000035307 FBLN2P98095 1184 aa18.32■□□□□ 0.52
CHPF2-201ENST00000035307 HNRNPUL2Q1KMD3 747 aaKnown RBP18.31■□□□□ 0.52
CHPF2-201ENST00000035307 BAZ1AQ9NRL2 1556 aaPredicted RBP18.31■□□□□ 0.52
CHPF2-201ENST00000035307 BAZ1BQ9UIG0 1483 aaKnown RBP18.3■□□□□ 0.52
CHPF2-201ENST00000035307 ARID3CA6NKF2 412 aa18.3■□□□□ 0.52
CHPF2-201ENST00000035307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.29■□□□□ 0.52
CHPF2-201ENST00000035307 YTHDC1Q96MU7 727 aaKnown RBP18.26■□□□□ 0.51
CHPF2-201ENST00000035307 ZEB1P37275 1124 aaPredicted RBP18.23■□□□□ 0.51
CHPF2-201ENST00000035307 CCDC88BA6NC98 1476 aa18.21■□□□□ 0.5
CHPF2-201ENST00000035307 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
CHPF2-201ENST00000035307 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
CHPF2-201ENST00000035307 SOGA1O94964 1423 aa18.07■□□□□ 0.48
CHPF2-201ENST00000035307 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
CHPF2-201ENST00000035307 SMARCA4P51532 1647 aa18.03■□□□□ 0.48
CHPF2-201ENST00000035307 ATAD2BQ9ULI0 1458 aa18.03■□□□□ 0.48
CHPF2-201ENST00000035307 CENPBP07199 599 aaPredicted RBP17.93■□□□□ 0.46
CHPF2-201ENST00000035307 FAM50AQ14320 339 aaKnown RBP17.93■□□□□ 0.46
CHPF2-201ENST00000035307 BICRAQ9NZM4 1560 aa17.9■□□□□ 0.46
CHPF2-201ENST00000035307 TOP2AP11388 1531 aaKnown RBP17.89■□□□□ 0.45
CHPF2-201ENST00000035307 RUSC2Q8N2Y8 1516 aa17.88■□□□□ 0.45
CHPF2-201ENST00000035307 SMARCA2P51531 1590 aa17.83■□□□□ 0.45
CHPF2-201ENST00000035307 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
CHPF2-201ENST00000035307 UNC13AQ9UPW8 1703 aa17.77■□□□□ 0.43
CHPF2-201ENST00000035307 TDRD9Q8NDG6 1382 aaKnown RBP17.76■□□□□ 0.43
CHPF2-201ENST00000035307 MYT1LQ9UL68 1186 aa17.75■□□□□ 0.43
CHPF2-201ENST00000035307 DIEXFQ68CQ4 756 aaKnown RBP17.75■□□□□ 0.43
CHPF2-201ENST00000035307 CEP162Q5TB80 1403 aa17.74■□□□□ 0.43
CHPF2-201ENST00000035307 CLIP1P30622 1438 aa17.71■□□□□ 0.43
CHPF2-201ENST00000035307 CUX2O14529 1486 aa17.7■□□□□ 0.42
CHPF2-201ENST00000035307 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
CHPF2-201ENST00000035307 CNGB1Q14028 1251 aaPredicted RBP17.7■□□□□ 0.42
CHPF2-201ENST00000035307 CHMP7Q8WUX9 453 aaPredicted RBP17.7■□□□□ 0.42
CHPF2-201ENST00000035307 ERCC6Q03468 1493 aa17.68■□□□□ 0.42
CHPF2-201ENST00000035307 NESP48681 1621 aa17.68■□□□□ 0.42
CHPF2-201ENST00000035307 ZNF777Q9ULD5 760 aaPredicted RBP17.65■□□□□ 0.42
CHPF2-201ENST00000035307 KIF27Q86VH2 1401 aa17.64■□□□□ 0.41
CHPF2-201ENST00000035307 NEUROD1Q13562 356 aa17.64■□□□□ 0.41
CHPF2-201ENST00000035307 GOLGA3Q08378 1498 aa17.6■□□□□ 0.41
CHPF2-201ENST00000035307 CC2D2AQ9P2K1 1620 aa17.58■□□□□ 0.4
CHPF2-201ENST00000035307 NCAPD3P42695 1498 aa17.58■□□□□ 0.4
CHPF2-201ENST00000035307 CHIC2Q9UKJ5 165 aa17.57■□□□□ 0.4
CHPF2-201ENST00000035307 PELP1Q8IZL8 1130 aaKnown RBP17.57■□□□□ 0.4
CHPF2-201ENST00000035307 TRIM52Q96A61 297 aa17.56■□□□□ 0.4
CHPF2-201ENST00000035307 CARMIL1Q5VZK9 1371 aa17.55■□□□□ 0.4
CHPF2-201ENST00000035307 TNIKQ9UKE5 1360 aa17.53■□□□□ 0.4
CHPF2-201ENST00000035307 FANCD2Q9BXW9 1451 aa17.52■□□□□ 0.4
CHPF2-201ENST00000035307 RAPGEF2Q9Y4G8 1499 aa17.52■□□□□ 0.4
CHPF2-201ENST00000035307 POLR3GLQ9BT43 218 aa17.52■□□□□ 0.4
CHPF2-201ENST00000035307 RAD54L2Q9Y4B4 1467 aa17.51■□□□□ 0.39
CHPF2-201ENST00000035307 CEP164Q9UPV0 1460 aa17.5■□□□□ 0.39
CHPF2-201ENST00000035307 KANK4Q5T7N3 995 aaPredicted RBP17.49■□□□□ 0.39
CHPF2-201ENST00000035307 EEA1Q15075 1411 aa17.48■□□□□ 0.39
CHPF2-201ENST00000035307 GTF3C3Q9Y5Q9 886 aa17.47■□□□□ 0.39
CHPF2-201ENST00000035307 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
CHPF2-201ENST00000035307 KCNH8Q96L42 1107 aa17.42■□□□□ 0.38
CHPF2-201ENST00000035307 SYNJ1O43426 1573 aa17.42■□□□□ 0.38
CHPF2-201ENST00000035307 ZNF326Q5BKZ1 582 aaKnown RBP17.38■□□□□ 0.37
CHPF2-201ENST00000035307 FGD5Q6ZNL6 1462 aa17.38■□□□□ 0.37
CHPF2-201ENST00000035307 ZNF316A6NFI3 1004 aaPredicted RBP17.37■□□□□ 0.37
CHPF2-201ENST00000035307 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
CHPF2-201ENST00000035307 RRP7BPQ9NSQ0 103 aa17.34■□□□□ 0.37
CHPF2-201ENST00000035307 CFTRP13569 1480 aa17.33■□□□□ 0.36
CHPF2-201ENST00000035307 AQRO60306 1485 aaKnown RBP eCLIP17.32■□□□□ 0.364e-7■■■□□ 15.2
CHPF2-201ENST00000035307 NEFLP07196 543 aa17.31■□□□□ 0.36
CHPF2-201ENST00000035307 BCANQ96GW7 911 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms