RNA–Protein interactions for RNA: ENSMUST00000108909.8

Scn8a-204, Transcript of Sodium channel protein type 8 subunit alpha, mousemouse

TSL 5 BASIC

Gene Scn8a, Length 11,436 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn8a-204ENSMUST00000108909 Rhox8Q6VSS7 320 aa13.86□□□□□ -0.19
Scn8a-204ENSMUST00000108909 Rpgrip1Q9EPQ2 1331 aa13.4□□□□□ -0.26
Scn8a-204ENSMUST00000108909 Ehmt2Q9Z148 1263 aaKnown RBP13.18□□□□□ -0.3
Scn8a-204ENSMUST00000108909 Las1lA2BE28 776 aaKnown RBP13.07□□□□□ -0.32
Scn8a-204ENSMUST00000108909 Cngb1E1AZ71 1325 aa12.91□□□□□ -0.34
Scn8a-204ENSMUST00000108909 Zeb1Q64318 1117 aa12.68□□□□□ -0.38
Scn8a-204ENSMUST00000108909 Wdr66E9Q743 1299 aa12.68□□□□□ -0.38
Scn8a-204ENSMUST00000108909 Pelp1Q9DBD5 1123 aaKnown RBP12.59□□□□□ -0.39
Scn8a-204ENSMUST00000108909 CenpbP27790 599 aa12.44□□□□□ -0.42
Scn8a-204ENSMUST00000108909 Acin1Q9JIX8 1338 aaKnown RBP12.42□□□□□ -0.42
Scn8a-204ENSMUST00000108909 Amer1Q7TS75 1132 aa12.39□□□□□ -0.43
Scn8a-204ENSMUST00000108909 Ccdc136Q3TVA9 1136 aa12.33□□□□□ -0.44
Scn8a-204ENSMUST00000108909 Rtl1Q7M732 1744 aa12.23□□□□□ -0.45
Scn8a-204ENSMUST00000108909 Gab3Q8BSM5 595 aa12.21□□□□□ -0.46
Scn8a-204ENSMUST00000108909 Pcgf6Q99NA9 353 aa12.18□□□□□ -0.46
Scn8a-204ENSMUST00000108909 Ttbk1Q6PCN3 1308 aa12.15□□□□□ -0.46
Scn8a-204ENSMUST00000108909 Ccdc180J3QNE4 1664 aa12.14□□□□□ -0.47
Scn8a-204ENSMUST00000108909 Ube2uB1AUC4 352 aa12.12□□□□□ -0.47
Scn8a-204ENSMUST00000108909 Myt1Q8CFC2 1127 aa12.1□□□□□ -0.47
Scn8a-204ENSMUST00000108909 NefmP08553 848 aa12.06□□□□□ -0.48
Scn8a-204ENSMUST00000108909 Trim41Q5NCC3 630 aa12.04□□□□□ -0.48
Scn8a-204ENSMUST00000108909 Slc24a1Q91WD8 1130 aa11.99□□□□□ -0.49
Scn8a-204ENSMUST00000108909 Esf1Q3V1V3 845 aaKnown RBP11.99□□□□□ -0.49
Scn8a-204ENSMUST00000108909 Cdk11bP24788 784 aaKnown RBP11.94□□□□□ -0.5
Scn8a-204ENSMUST00000108909 Myt1lP97500 1187 aa11.94□□□□□ -0.5
Scn8a-204ENSMUST00000108909 Supt5hO55201 1082 aaKnown RBP11.93□□□□□ -0.5
Scn8a-204ENSMUST00000108909 UbtfP25976 765 aaKnown RBP11.92□□□□□ -0.5
Scn8a-204ENSMUST00000108909 Stra8P70278 393 aa11.91□□□□□ -0.5
Scn8a-204ENSMUST00000108909 NischQ80TM9 1593 aa11.91□□□□□ -0.5
Scn8a-204ENSMUST00000108909 DiexfQ8BTT6 772 aaKnown RBP11.88□□□□□ -0.51
Scn8a-204ENSMUST00000108909 Npm2Q80W85 207 aa11.86□□□□□ -0.51
Scn8a-204ENSMUST00000108909 Nop58Q6DFW4 536 aaKnown RBP11.84□□□□□ -0.51
Scn8a-204ENSMUST00000108909 4933416C03RikQ3V063 378 aa11.83□□□□□ -0.52
Scn8a-204ENSMUST00000108909 Ppargc1bQ8VHJ7 1014 aa11.81□□□□□ -0.52
Scn8a-204ENSMUST00000108909 Tnnt3Q9QZ47 272 aa11.72□□□□□ -0.53
Scn8a-204ENSMUST00000108909 4930567H17RikQ3V0K5 233 aa11.71□□□□□ -0.53
Scn8a-204ENSMUST00000108909 HrcG5E8J6 738 aa11.68□□□□□ -0.54
Scn8a-204ENSMUST00000108909 Eif5bQ05D44 1216 aaKnown RBP11.66□□□□□ -0.54
Scn8a-204ENSMUST00000108909 Neurod1Q60867 357 aa11.61□□□□□ -0.55
Scn8a-204ENSMUST00000108909 Gm38655A0A286YDK6 273 aa11.61□□□□□ -0.55
Scn8a-204ENSMUST00000108909 NrdcQ8BHG1 1161 aa11.56□□□□□ -0.56
Scn8a-204ENSMUST00000108909 Csrnp3P59055 597 aa11.55□□□□□ -0.56
Scn8a-204ENSMUST00000108909 Rtl5Q5DTT4 599 aa11.55□□□□□ -0.56
Scn8a-204ENSMUST00000108909 NeflP08551 543 aa11.52□□□□□ -0.56
Scn8a-204ENSMUST00000108909 NclP09405 707 aaKnown RBP11.51□□□□□ -0.57
Scn8a-204ENSMUST00000108909 Mier1Q5UAK0 511 aa11.48□□□□□ -0.57
Scn8a-204ENSMUST00000108909 TonslQ6NZL6 1363 aa11.47□□□□□ -0.57
Scn8a-204ENSMUST00000108909 Anp32aO35381 247 aa11.44□□□□□ -0.58
Scn8a-204ENSMUST00000108909 Anks4bQ8K3X6 423 aa11.43□□□□□ -0.58
Scn8a-204ENSMUST00000108909 DaxxO35613 739 aa11.43□□□□□ -0.58
Scn8a-204ENSMUST00000108909 Fam50aQ9WV03 339 aaKnown RBP11.42□□□□□ -0.58
Scn8a-204ENSMUST00000108909 ClspnQ80YR7 1315 aa11.41□□□□□ -0.58
Scn8a-204ENSMUST00000108909 Ap3b1Q9Z1T1 1105 aa11.37□□□□□ -0.59
Scn8a-204ENSMUST00000108909 Aplp2Q06335 707 aa11.35□□□□□ -0.59
Scn8a-204ENSMUST00000108909 Anp32bQ9EST5 272 aaKnown RBP11.33□□□□□ -0.6
Scn8a-204ENSMUST00000108909 Sall2Q9QX96 1004 aa11.33□□□□□ -0.6
Scn8a-204ENSMUST00000108909 Mapk8ip2Q9ERE9 830 aa11.28□□□□□ -0.6
Scn8a-204ENSMUST00000108909 1700123L14RikQ3V2K7 440 aa11.23□□□□□ -0.61
Scn8a-204ENSMUST00000108909 Il27Q8K3I6 234 aa11.21□□□□□ -0.62
Scn8a-204ENSMUST00000108909 Dcaf1Q80TR8 1506 aa11.2□□□□□ -0.62
Scn8a-204ENSMUST00000108909 ArxO35085 564 aa11.15□□□□□ -0.62
Scn8a-204ENSMUST00000108909 Zcchc6Q5BLK4 1491 aaKnown RBP11.15□□□□□ -0.62
Scn8a-204ENSMUST00000108909 Calr4Q3TQS0 420 aa11.14□□□□□ -0.63
Scn8a-204ENSMUST00000108909 Bcl11aQ9QYE3 773 aa11.13□□□□□ -0.63
Scn8a-204ENSMUST00000108909 Ppp4r2Q0VGB7 417 aa11.11□□□□□ -0.63
Scn8a-204ENSMUST00000108909 Fam71e1A1L3C1 212 aa11.11□□□□□ -0.63
Scn8a-204ENSMUST00000108909 Plekhg3Q4VAC9 1341 aa11.1□□□□□ -0.63
Scn8a-204ENSMUST00000108909 Os9Q8K2C7 672 aa11.09□□□□□ -0.63
Scn8a-204ENSMUST00000108909 Eid3Q3V124 375 aa11.05□□□□□ -0.64
Scn8a-204ENSMUST00000108909 Ythdc1E9Q5K9 736 aaKnown RBP11.02□□□□□ -0.64
Scn8a-204ENSMUST00000108909 Hsp90aa1P07901 733 aaKnown RBP11.01□□□□□ -0.65
Scn8a-204ENSMUST00000108909 Zbtb4Q5F293 982 aa10.99□□□□□ -0.65
Scn8a-204ENSMUST00000108909 Wdr43Q6ZQL4 677 aaKnown RBP10.98□□□□□ -0.65
Scn8a-204ENSMUST00000108909 Ccdc9Q8VC31 543 aaKnown RBP10.97□□□□□ -0.65
Scn8a-204ENSMUST00000108909 Abcc9P70170 1546 aa10.96□□□□□ -0.65
Scn8a-204ENSMUST00000108909 CatipB9EKE5 520 aa10.96□□□□□ -0.65
Scn8a-204ENSMUST00000108909 Polr3glQ8R0C0 218 aa10.96□□□□□ -0.66
Scn8a-204ENSMUST00000108909 Lmod2Q3UHZ5 550 aa10.94□□□□□ -0.66
Scn8a-204ENSMUST00000108909 Lmod3E9QA62 571 aa10.93□□□□□ -0.66
Scn8a-204ENSMUST00000108909 Nlrp6Q91WS2 869 aa10.93□□□□□ -0.66
Scn8a-204ENSMUST00000108909 Zbtb7cQ8VCZ7 619 aa10.9□□□□□ -0.66
Scn8a-204ENSMUST00000108909 Aebp2Q9Z248 504 aaKnown RBP10.89□□□□□ -0.67
Scn8a-204ENSMUST00000108909 Gm35339A0A140LHH9 1649 aa10.89□□□□□ -0.67
Scn8a-204ENSMUST00000108909 Upf2A2AT37 1269 aaKnown RBP10.88□□□□□ -0.67
Scn8a-204ENSMUST00000108909 Vsig10D3YX43 558 aa10.87□□□□□ -0.67
Scn8a-204ENSMUST00000108909 DekQ7TNV0 380 aaKnown RBP10.87□□□□□ -0.67
Scn8a-204ENSMUST00000108909 Prdm10Q3UTQ7 1184 aa10.87□□□□□ -0.67
Scn8a-204ENSMUST00000108909 Cep164Q5DU05 1446 aa10.85□□□□□ -0.67
Scn8a-204ENSMUST00000108909 Rad21Q61550 635 aaKnown RBP10.83□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Clip1Q922J3 1391 aa10.83□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Mrs2Q5NCE8 434 aa10.83□□□□□ -0.68
Scn8a-204ENSMUST00000108909 CanxP35564 591 aaKnown RBP10.83□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Ccdc27Q3V036 639 aa10.83□□□□□ -0.68
Scn8a-204ENSMUST00000108909 SafbD3YXK2 937 aaKnown RBP10.82□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Chic1Q8CBW7 227 aa10.82□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Hnrnpul2Q00PI9 745 aaKnown RBP10.79□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Irx3P81067 507 aa10.78□□□□□ -0.68
Scn8a-204ENSMUST00000108909 P3h3Q8CG70 732 aa10.78□□□□□ -0.68
Scn8a-204ENSMUST00000108909 Rangap1P46061 589 aaKnown RBP10.76□□□□□ -0.69
Scn8a-204ENSMUST00000108909 Erich6D3Z6S9 713 aa10.75□□□□□ -0.69
Retrieved 100 of 22,080 RNA–protein pairs in 7.1 ms