RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 Rhox8Q6VSS7 320 aa21.72■■□□□ 1.07
Pcif1-201ENSMUST00000041643 NischQ80TM9 1593 aa20.52■□□□□ 0.88
Pcif1-201ENSMUST00000041643 Ccdc136Q3TVA9 1136 aa19.56■□□□□ 0.72
Pcif1-201ENSMUST00000041643 Esf1Q3V1V3 845 aaKnown RBP19.34■□□□□ 0.69
Pcif1-201ENSMUST00000041643 Abcc9P70170 1546 aa19.3■□□□□ 0.68
Pcif1-201ENSMUST00000041643 Cngb1E1AZ71 1325 aa19.3■□□□□ 0.68
Pcif1-201ENSMUST00000041643 Trim41Q5NCC3 630 aa19.12■□□□□ 0.65
Pcif1-201ENSMUST00000041643 Ehmt2Q9Z148 1263 aaKnown RBP19.02■□□□□ 0.64
Pcif1-201ENSMUST00000041643 Abcc8B2RUS7 1588 aa18.96■□□□□ 0.63
Pcif1-201ENSMUST00000041643 Gab3Q8BSM5 595 aa18.86■□□□□ 0.61
Pcif1-201ENSMUST00000041643 Gm35339A0A140LHH9 1649 aa18.84■□□□□ 0.61
Pcif1-201ENSMUST00000041643 Zeb1Q64318 1117 aa18.73■□□□□ 0.59
Pcif1-201ENSMUST00000041643 Npm2Q80W85 207 aa18.73■□□□□ 0.59
Pcif1-201ENSMUST00000041643 Rpgrip1Q9EPQ2 1331 aa18.7■□□□□ 0.58
Pcif1-201ENSMUST00000041643 Zcchc6Q5BLK4 1491 aaKnown RBP18.66■□□□□ 0.58
Pcif1-201ENSMUST00000041643 Rtl1Q7M732 1744 aa18.62■□□□□ 0.57
Pcif1-201ENSMUST00000041643 Ccdc180J3QNE4 1664 aa18.58■□□□□ 0.56
Pcif1-201ENSMUST00000041643 Myt1lP97500 1187 aa18.55■□□□□ 0.56
Pcif1-201ENSMUST00000041643 Ube2uB1AUC4 352 aa18.32■□□□□ 0.52
Pcif1-201ENSMUST00000041643 Il27Q8K3I6 234 aa18.29■□□□□ 0.52
Pcif1-201ENSMUST00000041643 Las1lA2BE28 776 aaKnown RBP18.2■□□□□ 0.5
Pcif1-201ENSMUST00000041643 HrcG5E8J6 738 aa18.2■□□□□ 0.5
Pcif1-201ENSMUST00000041643 Wdr66E9Q743 1299 aa18.14■□□□□ 0.49
Pcif1-201ENSMUST00000041643 Rb1cc1Q9ESK9 1588 aa18.07■□□□□ 0.48
Pcif1-201ENSMUST00000041643 UbtfP25976 765 aaKnown RBP18.02■□□□□ 0.47
Pcif1-201ENSMUST00000041643 NacadQ5SWP3 1504 aa17.92■□□□□ 0.46
Pcif1-201ENSMUST00000041643 Acin1Q9JIX8 1338 aaKnown RBP17.83■□□□□ 0.45
Pcif1-201ENSMUST00000041643 Ap3b1Q9Z1T1 1105 aa17.82■□□□□ 0.44
Pcif1-201ENSMUST00000041643 Brd4Q9ESU6 1400 aaKnown RBP17.77■□□□□ 0.44
Pcif1-201ENSMUST00000041643 Npm1Q61937 292 aaKnown RBP17.72■□□□□ 0.43
Pcif1-201ENSMUST00000041643 NefmP08553 848 aa17.69■□□□□ 0.42
Pcif1-201ENSMUST00000041643 Baz1aO88379 1555 aa17.64■□□□□ 0.41
Pcif1-201ENSMUST00000041643 Kdm5dQ62240 1548 aa17.64■□□□□ 0.41
Pcif1-201ENSMUST00000041643 Dcaf1Q80TR8 1506 aa17.62■□□□□ 0.41
Pcif1-201ENSMUST00000041643 Fam50aQ9WV03 339 aaKnown RBP17.53■□□□□ 0.4
Pcif1-201ENSMUST00000041643 Ubl4bQ9CQ84 188 aa17.44■□□□□ 0.38
Pcif1-201ENSMUST00000041643 Chic1Q8CBW7 227 aa17.41■□□□□ 0.38
Pcif1-201ENSMUST00000041643 Lmod2Q3UHZ5 550 aa17.33■□□□□ 0.36
Pcif1-201ENSMUST00000041643 Cep164Q5DU05 1446 aa17.33■□□□□ 0.36
Pcif1-201ENSMUST00000041643 Plekhg3Q4VAC9 1341 aa17.3■□□□□ 0.36
Pcif1-201ENSMUST00000041643 Ercc6F8VPZ5 1481 aa17.25■□□□□ 0.35
Pcif1-201ENSMUST00000041643 Neurod1Q60867 357 aa17.25■□□□□ 0.35
Pcif1-201ENSMUST00000041643 Mier1Q5UAK0 511 aa17.23■□□□□ 0.35
Pcif1-201ENSMUST00000041643 Slc24a1Q91WD8 1130 aa17.19■□□□□ 0.34
Pcif1-201ENSMUST00000041643 NclP09405 707 aaKnown RBP17.17■□□□□ 0.34
Pcif1-201ENSMUST00000041643 Sycp2Q9CUU3 1500 aa17.17■□□□□ 0.34
Pcif1-201ENSMUST00000041643 Ifnlr1Q8CGK5 535 aa17.17■□□□□ 0.34
Pcif1-201ENSMUST00000041643 Golga3P55937 1487 aa17.15■□□□□ 0.34
Pcif1-201ENSMUST00000041643 ScribQ80U72 1612 aa17.15■□□□□ 0.34
Pcif1-201ENSMUST00000041643 Clip1Q922J3 1391 aa17.13■□□□□ 0.33
Pcif1-201ENSMUST00000041643 TonslQ6NZL6 1363 aa17.11■□□□□ 0.33
Pcif1-201ENSMUST00000041643 Kif15Q6P9L6 1387 aa17.11■□□□□ 0.33
Pcif1-201ENSMUST00000041643 Rsf1E9PWW9 1441 aaKnown RBP17.11■□□□□ 0.33
Pcif1-201ENSMUST00000041643 Os9Q8K2C7 672 aa17.1■□□□□ 0.33
Pcif1-201ENSMUST00000041643 Stra8P70278 393 aa17.09■□□□□ 0.33
Pcif1-201ENSMUST00000041643 Zbtb7cQ8VCZ7 619 aa17.09■□□□□ 0.33
Pcif1-201ENSMUST00000041643 Fkbp15Q6P9Q6 1216 aaKnown RBP17.06■□□□□ 0.32
Pcif1-201ENSMUST00000041643 Pds5bQ4VA53 1446 aaKnown RBP17.02■□□□□ 0.32
Pcif1-201ENSMUST00000041643 Ppargc1bQ8VHJ7 1014 aa17.01■□□□□ 0.31
Pcif1-201ENSMUST00000041643 Hnrnpul2Q00PI9 745 aaKnown RBP16.96■□□□□ 0.31
Pcif1-201ENSMUST00000041643 Ccdc18Q640L5 1455 aa16.95■□□□□ 0.3
Pcif1-201ENSMUST00000041643 Pelp1Q9DBD5 1123 aaKnown RBP16.92■□□□□ 0.3
Pcif1-201ENSMUST00000041643 Pcgf6Q99NA9 353 aa16.91■□□□□ 0.3
Pcif1-201ENSMUST00000041643 Crybg2B7ZCC2 1516 aa16.91■□□□□ 0.3
Pcif1-201ENSMUST00000041643 Cdk11bP24788 784 aaKnown RBP16.89■□□□□ 0.3
Pcif1-201ENSMUST00000041643 Anp32bQ9EST5 272 aaKnown RBP16.89■□□□□ 0.29
Pcif1-201ENSMUST00000041643 NrdcQ8BHG1 1161 aa16.87■□□□□ 0.29
Pcif1-201ENSMUST00000041643 Supt5hO55201 1082 aaKnown RBP16.82■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Gm13697A2AK42 830 aa16.82■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Setd5Q5XJV7 1441 aa16.8■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Erich6D3Z6S9 713 aa16.8■□□□□ 0.28
Pcif1-201ENSMUST00000041643 BlmO88700 1416 aa16.79■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Nop58Q6DFW4 536 aaKnown RBP16.78■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Cecr2E9Q2Z1 1453 aa16.78■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Smarca2Q6DIC0 1577 aa16.78■□□□□ 0.28
Pcif1-201ENSMUST00000041643 Eid3Q3V124 375 aa16.77■□□□□ 0.27
Pcif1-201ENSMUST00000041643 Ttbk1Q6PCN3 1308 aa16.76■□□□□ 0.27
Pcif1-201ENSMUST00000041643 Chic2Q9D9G3 165 aa16.72■□□□□ 0.27
Pcif1-201ENSMUST00000041643 CftrP26361 1476 aa16.71■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Synj1Q8CHC4 1574 aa16.69■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Fmn1Q05860 1466 aa16.69■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Smarca4Q3TKT4 1613 aaKnown RBP16.68■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Ccdc88bQ4QRL3 1481 aa16.67■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Eif5bQ05D44 1216 aaKnown RBP16.67■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Zbtb4Q5F293 982 aa16.67■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Arhgap27A2AB59 869 aa16.67■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Atad2bE9Q166 1460 aaKnown RBP16.65■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Atp1b4Q99ME6 356 aa16.65■□□□□ 0.26
Pcif1-201ENSMUST00000041643 CenpbP27790 599 aa16.65■□□□□ 0.26
Pcif1-201ENSMUST00000041643 Plppr3Q7TPB0 716 aa16.64■□□□□ 0.25
Pcif1-201ENSMUST00000041643 Eea1Q8BL66 1411 aa16.63■□□□□ 0.25
Pcif1-201ENSMUST00000041643 Ccer2J3QPU5 274 aa16.62■□□□□ 0.25
Pcif1-201ENSMUST00000041643 ClspnQ80YR7 1315 aa16.61■□□□□ 0.25
Pcif1-201ENSMUST00000041643 Hdac5Q9Z2V6 1113 aa16.58■□□□□ 0.25
Pcif1-201ENSMUST00000041643 Tnnt3Q9QZ47 272 aa16.56■□□□□ 0.24
Pcif1-201ENSMUST00000041643 Cttnbp2B9EJA2 1648 aa16.55■□□□□ 0.24
Pcif1-201ENSMUST00000041643 Phldb1Q6PDH0 1371 aaKnown RBP16.54■□□□□ 0.24
Pcif1-201ENSMUST00000041643 Mapk8ip2Q9ERE9 830 aa16.54■□□□□ 0.24
Pcif1-201ENSMUST00000041643 Cux2P70298 1426 aa16.53■□□□□ 0.24
Pcif1-201ENSMUST00000041643 Gm13695A2AK44 830 aa16.52■□□□□ 0.23
Retrieved 100 of 22,080 RNA–protein pairs in 40.2 ms