RNA–Protein interactions for RNA: snR42

snR42, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR42, Length 351 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR42	snR42	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
snR42	snR42	MHP1	P43638	1398 aa		4.13	□□□□□ -1.75
snR42	snR42	AUS1	Q08409	1394 aa		4.13	□□□□□ -1.75
snR42	snR42	CYC7	P00045	113 aa		4.12	□□□□□ -1.75
snR42	snR42	AKR1	P39010	764 aa		4.12	□□□□□ -1.75
snR42	snR42	QDR2	P40474	542 aa		4.12	□□□□□ -1.75
snR42	snR42	YJL007C	P47080	104 aa		4.12	□□□□□ -1.75
snR42	snR42	ACS2	P52910	683 aa	Known RBP	4.12	□□□□□ -1.75
snR42	snR42	DSD1	P53095	428 aa		4.12	□□□□□ -1.75
snR42	snR42	INP54	Q08227	384 aa	Known RBP	4.12	□□□□□ -1.75
snR42	snR42	HAP4	P14064	554 aa		4.11	□□□□□ -1.75
snR42	snR42	RAD4	P14736	754 aa		4.11	□□□□□ -1.75
snR42	snR42	PHO87	P25360	923 aa		4.11	□□□□□ -1.75
snR42	snR42	NAM7	P30771	971 aa	Known RBP	4.11	□□□□□ -1.75
snR42	snR42	RRT14	P40470	206 aa		4.11	□□□□□ -1.75
snR42	snR42	ITC1	P53125	1264 aa		4.11	□□□□□ -1.75
snR42	snR42	REC8	Q12188	680 aa		4.11	□□□□□ -1.75
snR42	snR42	EAF6	P47128	113 aa		4.1	□□□□□ -1.75
snR42	snR42	UTP22	P53254	1237 aa	Predicted RBP	4.1	□□□□□ -1.75
snR42	snR42	SOK2	P53438	785 aa	Predicted RBP	4.1	□□□□□ -1.75
snR42	snR42	CTF4	Q01454	927 aa		4.1	□□□□□ -1.75
snR42	snR42	CTI6	Q08923	506 aa		4.1	□□□□□ -1.75
snR42	snR42	MSB1	P21339	1137 aa	Known RBP	4.09	□□□□□ -1.75
snR42	snR42	AKL1	P38080	1108 aa	Known RBP	4.09	□□□□□ -1.75
snR42	snR42	LEO1	P38439	464 aa		4.09	□□□□□ -1.75
snR42	snR42	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
snR42	snR42	RSC2	Q06488	889 aa		4.09	□□□□□ -1.75
snR42	snR42	YOR296W	Q08748	1289 aa		4.09	□□□□□ -1.75
snR42	snR42	RNQ1	P25367	405 aa		4.08	□□□□□ -1.76
snR42	snR42	SER1	P33330	395 aa	Known RBP	4.08	□□□□□ -1.76
snR42	snR42	NUP145	P49687	1317 aa		4.08	□□□□□ -1.76
snR42	snR42	RMT2	Q03305	412 aa		4.08	□□□□□ -1.76
snR42	snR42	CTT1	P06115	562 aa		4.07	□□□□□ -1.76
snR42	snR42	TIF1	P10081	395 aa	Known RBP	4.07	□□□□□ -1.76
snR42	snR42	KCC4	P25389	1037 aa		4.07	□□□□□ -1.76
snR42	snR42	RTG2	P32608	588 aa	Known RBP	4.07	□□□□□ -1.76
snR42	snR42	CWH41	P53008	833 aa		4.07	□□□□□ -1.76
snR42	snR42	SQS1	P53866	767 aa	Known RBP	4.07	□□□□□ -1.76
snR42	snR42	RIX7	Q07844	837 aa	Known RBP	4.07	□□□□□ -1.76
snR42	snR42	ALE1	Q08548	619 aa		4.07	□□□□□ -1.76
snR42	snR42	YKL222C	P35995	705 aa		4.06	□□□□□ -1.76
snR42	snR42	MDG1	P53885	366 aa		4.06	□□□□□ -1.76
snR42	snR42	LPD1	P09624	499 aa	Known RBP	4.05	□□□□□ -1.76
snR42	snR42	BIM1	P40013	344 aa		4.05	□□□□□ -1.76
snR42	snR42	RTR1	P40084	226 aa	Predicted RBP	4.05	□□□□□ -1.76
snR42	snR42	NIT1	P40447	199 aa		4.05	□□□□□ -1.76
snR42	snR42	YGL082W	P53155	381 aa		4.05	□□□□□ -1.76
snR42	snR42	NSE3	Q05541	303 aa		4.05	□□□□□ -1.76
snR42	snR42	NYV1	Q12255	253 aa		4.05	□□□□□ -1.76
snR42	snR42	TOP1	P04786	769 aa		4.04	□□□□□ -1.76
snR42	snR42	VAN1	P23642	535 aa		4.04	□□□□□ -1.76
snR42	snR42	VMA3	P25515	160 aa		4.04	□□□□□ -1.76
snR42	snR42	YCR015C	P25616	317 aa		4.04	□□□□□ -1.76
snR42	snR42	GIP1	P38229	639 aa		4.04	□□□□□ -1.76
snR42	snR42	DYS1	P38791	387 aa		4.04	□□□□□ -1.76
snR42	snR42	ATG32	P40458	529 aa		4.04	□□□□□ -1.76
snR42	snR42	KTR7	P40504	517 aa		4.04	□□□□□ -1.76
snR42	snR42	RPL34B	P40525	121 aa	Known RBP	4.04	□□□□□ -1.76
snR42	snR42	LEM3	P42838	414 aa		4.04	□□□□□ -1.76
snR42	snR42	YFR016C	P43597	1233 aa	Known RBP	4.04	□□□□□ -1.76
snR42	snR42	ROM1	P53046	1155 aa		4.04	□□□□□ -1.76
snR42	snR42	IRC3	Q06683	689 aa		4.04	□□□□□ -1.76
snR42	snR42	SEG2	P34250	1132 aa		4.03	□□□□□ -1.76
snR42	snR42	YBR287W	P38355	427 aa		4.03	□□□□□ -1.76
snR42	snR42	BSD2	P38356	321 aa		4.03	□□□□□ -1.76
snR42	snR42	PAN5	P38787	379 aa		4.03	□□□□□ -1.76
snR42	snR42	ECL1	P48235	211 aa		4.03	□□□□□ -1.76
snR42	snR42	ZDS1	P50111	915 aa	Known RBP	4.03	□□□□□ -1.76
snR42	snR42	PPT1	P53043	513 aa		4.03	□□□□□ -1.76
snR42	snR42	GUP1	P53154	560 aa		4.03	□□□□□ -1.76
snR42	snR42	RAT1	Q02792	1006 aa	Known RBP	4.03	□□□□□ -1.76
snR42	snR42	VPS64	Q03944	604 aa		4.03	□□□□□ -1.76
snR42	snR42	SSP2	Q08646	371 aa		4.03	□□□□□ -1.76
snR42	snR42	MRPL33	P20084	86 aa		4.02	□□□□□ -1.77
snR42	snR42	SMY1	P32364	656 aa	Known RBP	4.02	□□□□□ -1.77
snR42	snR42	LRG1	P35688	1017 aa		4.02	□□□□□ -1.77
snR42	snR42	ERT1	P38140	529 aa		4.02	□□□□□ -1.77
snR42	snR42	SEA4	P38164	1038 aa		4.02	□□□□□ -1.77
snR42	snR42	NCE103	P53615	221 aa		4.02	□□□□□ -1.77
snR42	snR42	KIN4	Q01919	800 aa		4.02	□□□□□ -1.77
snR42	snR42	BDF2	Q07442	638 aa		4.02	□□□□□ -1.77
snR42	snR42	CAF20	P12962	161 aa	Known RBP	4.01	□□□□□ -1.77
snR42	snR42	GAL2	P13181	574 aa		4.01	□□□□□ -1.77
snR42	snR42	ICL1	P28240	557 aa	Predicted RBP	4.01	□□□□□ -1.77
snR42	snR42	MAE1	P36013	669 aa	Known RBP	4.01	□□□□□ -1.77
snR42	snR42	SIS2	P36024	562 aa		4.01	□□□□□ -1.77
snR42	snR42	LDH1	P38139	375 aa		4.01	□□□□□ -1.77
snR42	snR42	ISW1	P38144	1129 aa		4.01	□□□□□ -1.77
snR42	snR42	PFF1	P38244	976 aa		4.01	□□□□□ -1.77
snR42	snR42	YIL165C	P40446	119 aa		4.01	□□□□□ -1.77
snR42	snR42	INP51	P40559	946 aa	Known RBP	4.01	□□□□□ -1.77
snR42	snR42	RRP46	P53256	223 aa	Predicted RBP	4.01	□□□□□ -1.77
snR42	snR42	YNL050C	P53952	270 aa		4.01	□□□□□ -1.77
snR42	snR42	PKH1	Q03407	766 aa		4.01	□□□□□ -1.77
snR42	snR42	DIB1	Q06819	143 aa	Predicted RBP	4.01	□□□□□ -1.77
snR42	snR42	PRD1	P25375	712 aa		4	□□□□□ -1.77
snR42	snR42	YKU70	P32807	602 aa		4	□□□□□ -1.77
snR42	snR42	APL2	P36000	726 aa	Predicted RBP	4	□□□□□ -1.77
snR42	snR42	MAM1	P40065	302 aa		4	□□□□□ -1.77
snR42	snR42	ZDS2	P54786	942 aa		4	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 9.5 ms