RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	UFD2	P54860	961 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	SFH1	Q06168	426 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	SSC1	P0CS90	654 aa	Known RBP	4.55	□□□□□ -1.68
SEN1	YLR430W	YRO2	P38079	344 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	RCM1	P53972	490 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	WAR1	Q03631	944 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	TAF8	Q03750	510 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	SCM3	Q12334	223 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	SPO1	P53541	631 aa		4.55	□□□□□ -1.68
SEN1	YLR430W	NOT5	Q12514	560 aa	Predicted RBP	4.55	□□□□□ -1.68
SEN1	YLR430W	RPT2	P40327	437 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	TSR3	Q12094	313 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	GPR1	Q12361	961 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	ZPR1	P53303	486 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	ADA2	Q02336	434 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	HMI1	Q12039	706 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	VIK1	Q12045	647 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	YML002W	P0CF17	737 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	IME1	P21190	360 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	RIB7	P33312	244 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	YKL091C	P33324	310 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	KES1	P35844	434 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	CTF4	Q01454	927 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	YLR177W	Q06251	628 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	YLH47	Q06493	454 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	PSK2	Q08217	1101 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	CDC31	P06704	161 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	FZO1	P38297	855 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	CIC1	P38779	376 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	VPS38	Q05919	439 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	SEC15	P22224	910 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	TBS1	P38114	1094 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	YHB1	P39676	399 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	HFM1	P51979	1187 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	RMD1	Q03441	430 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	TRS120	Q04183	1289 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	NOP6	Q07623	225 aa	Known RBP	4.54	□□□□□ -1.68
SEN1	YLR430W	RTT109	Q07794	436 aa		4.54	□□□□□ -1.68
SEN1	YLR430W	VPS1	P21576	704 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	REV7	P38927	245 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	NOC2	P39744	710 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	VTC2	P43585	828 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	ITT1	Q04638	464 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	VAC14	Q06708	880 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	RKM1	Q08961	583 aa	Predicted RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	LSO2	Q3E772	92 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	ADE6	P38972	1358 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	ADH4	P10127	382 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	NOP9	P47077	666 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	RSM28	Q03430	361 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	GNT1	Q12096	491 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	GSY2	P27472	705 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	CDC15	P27636	974 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	CBF2	P32504	956 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	TMA22	P47089	198 aa	Predicted RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	BRE1	Q07457	700 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	GPN2	Q08726	347 aa	Predicted RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	STO1	P34160	861 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	CDC27	P38042	758 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	PCH2	P38126	564 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	MIC19	P43594	170 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	IOC3	P43596	787 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	SQS1	P53866	767 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	VPS16	Q03308	798 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	SSK22	P25390	1331 aa	Predicted RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	SEC23	P15303	768 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	SIN4	P32259	974 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	STE13	P33894	931 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	YPL109C	Q02981	657 aa		4.53	□□□□□ -1.68
SEN1	YLR430W	SXM1	Q04175	944 aa	Known RBP	4.53	□□□□□ -1.68
SEN1	YLR430W	PHO84	P25297	587 aa	Known RBP	4.53	□□□□□ -1.69
SEN1	YLR430W	NIP100	P33420	868 aa		4.53	□□□□□ -1.69
SEN1	YLR430W	YKR015C	P36111	568 aa		4.53	□□□□□ -1.69
SEN1	YLR430W	YBR242W	P38331	238 aa		4.53	□□□□□ -1.69
SEN1	YLR430W	SWD1	P39706	426 aa		4.53	□□□□□ -1.69
SEN1	YLR430W	KEL2	P50090	882 aa		4.53	□□□□□ -1.69
SEN1	YLR430W	PCL10	P53124	433 aa		4.53	□□□□□ -1.69
SEN1	YLR430W	MCX1	P38323	520 aa	Predicted RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	YTA6	P40328	754 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	UTP18	P40362	594 aa	Predicted RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	BOP3	P53958	396 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	SYO1	Q07395	620 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	TAF10	Q12030	206 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	RPL17A	P05740	184 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	MSB1	P21339	1137 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	SMY2	P32909	740 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	YER130C	P39959	443 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	ULP1	Q02724	621 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	YPL150W	Q12152	901 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	RIO1	Q12196	484 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	SEC21	P32074	935 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
SEN1	YLR430W	SIP3	P38717	1229 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	YEL023C	P39992	682 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	MAG2	Q06436	670 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	CTI6	Q08923	506 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	NMT1	P14743	455 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	PRP4	P20053	465 aa	Known RBP	4.52	□□□□□ -1.69
SEN1	YLR430W	MSM1	P22438	575 aa		4.52	□□□□□ -1.69
SEN1	YLR430W	SPO22	P40511	975 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms