RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	TFB2	Q02939	513 aa		13.46	□□□□□ -0.26
BDF1	YLR399C	PDC6	P26263	563 aa	Known RBP	13.45	□□□□□ -0.26
BDF1	YLR399C	ERV41	Q04651	352 aa		13.45	□□□□□ -0.26
BDF1	YLR399C	PSR2	Q07949	397 aa		13.45	□□□□□ -0.26
BDF1	YLR399C	UTP10	P42945	1769 aa	Known RBP	13.45	□□□□□ -0.26
BDF1	YLR399C	CDC10	P25342	322 aa	Known RBP	13.44	□□□□□ -0.26
BDF1	YLR399C	BUD14	P27637	709 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	BMH1	P29311	267 aa	Known RBP	13.44	□□□□□ -0.26
BDF1	YLR399C	PSO2	P30620	661 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	BET4	Q00618	327 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	YPL109C	Q02981	657 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	PKH1	Q03407	766 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	SWI4	P25302	1093 aa	Known RBP	13.44	□□□□□ -0.26
BDF1	YLR399C	UBP14	P38237	781 aa	Known RBP	13.44	□□□□□ -0.26
BDF1	YLR399C	VFA1	P40080	203 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	YAP5	P40574	245 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	VPS53	P47061	822 aa		13.44	□□□□□ -0.26
BDF1	YLR399C	NEW1	Q08972	1196 aa	Known RBP	13.44	□□□□□ -0.26
BDF1	YLR399C	SAC3	P46674	1301 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	CLB4	P24871	460 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	ENP2	P48234	707 aa	Known RBP	13.43	□□□□□ -0.26
BDF1	YLR399C	UBP16	Q02863	499 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	GRX3	Q03835	250 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	POB3	Q04636	552 aa	Known RBP	13.43	□□□□□ -0.26
BDF1	YLR399C	MMR1	Q06324	491 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	RSF2	P46974	1380 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	GCD2	P12754	651 aa	Predicted RBP	13.43	□□□□□ -0.26
BDF1	YLR399C	RER2	P35196	286 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	ADE16	P54113	591 aa	Known RBP	13.43	□□□□□ -0.26
BDF1	YLR399C	MAK10	Q02197	733 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	VTI1	Q04338	217 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	CWC2	Q12046	339 aa	Predicted RBP	13.43	□□□□□ -0.26
BDF1	YLR399C	SSF2	Q12153	453 aa	Predicted RBP	13.43	□□□□□ -0.26
BDF1	YLR399C	PTC5	Q12511	572 aa		13.43	□□□□□ -0.26
BDF1	YLR399C	IME1	P21190	360 aa		13.42	□□□□□ -0.26
BDF1	YLR399C	MET1	P36150	593 aa		13.42	□□□□□ -0.26
BDF1	YLR399C	XKS1	P42826	600 aa		13.42	□□□□□ -0.26
BDF1	YLR399C	AIP1	P46680	615 aa	Known RBP	13.42	□□□□□ -0.26
BDF1	YLR399C	URH1	Q04179	340 aa		13.42	□□□□□ -0.26
BDF1	YLR399C	RPC25	P35718	212 aa		13.41	□□□□□ -0.26
BDF1	YLR399C	MAD1	P40957	749 aa		13.41	□□□□□ -0.26
BDF1	YLR399C	MSB3	P48566	633 aa	Predicted RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	YMR114C	Q04471	368 aa	Known RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	SPP382	Q06411	708 aa	Predicted RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	SPN1	Q06505	410 aa	Predicted RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	PPR1	P07272	904 aa	Predicted RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	VAN1	P23642	535 aa		13.41	□□□□□ -0.26
BDF1	YLR399C	GRX7	P38068	203 aa		13.41	□□□□□ -0.26
BDF1	YLR399C	SPP381	P38282	291 aa	Predicted RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	CRG1	P38892	291 aa	RIP-Chip data	13.41	□□□□□ -0.26	not detected
BDF1	YLR399C	CCT2	P39076	527 aa	Known RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	FAR11	P53917	953 aa		13.41	□□□□□ -0.26
BDF1	YLR399C	RRP15	Q06511	250 aa	Predicted RBP	13.41	□□□□□ -0.26
BDF1	YLR399C	OAF3	P36023	863 aa		13.4	□□□□□ -0.26
BDF1	YLR399C	IES1	P43579	692 aa		13.4	□□□□□ -0.26
BDF1	YLR399C	GTR1	Q00582	310 aa		13.4	□□□□□ -0.26
BDF1	YLR399C	GFA1	P14742	717 aa	Known RBP	13.4	□□□□□ -0.27
BDF1	YLR399C	PRP4	P20053	465 aa	Known RBP	13.4	□□□□□ -0.27
BDF1	YLR399C	BCD1	P38772	366 aa		13.4	□□□□□ -0.27
BDF1	YLR399C	ARO80	Q04052	950 aa		13.4	□□□□□ -0.27
BDF1	YLR399C	CSR1	Q06705	408 aa	Known RBP	13.4	□□□□□ -0.27
BDF1	YLR399C	YPR204W	Q08995	1032 aa		13.4	□□□□□ -0.27
BDF1	YLR399C	PRP5	P21372	849 aa	Predicted RBP	13.39	□□□□□ -0.27
BDF1	YLR399C	YOL075C	Q08234	1294 aa		13.39	□□□□□ -0.27
BDF1	YLR399C	MFM1	Q02783	413 aa		13.38	□□□□□ -0.27
BDF1	YLR399C	APL5	Q08951	932 aa	Known RBP	13.38	□□□□□ -0.27
BDF1	YLR399C	BMH2	P34730	273 aa	Known RBP	13.38	□□□□□ -0.27
BDF1	YLR399C	YIL001W	P40560	513 aa		13.38	□□□□□ -0.27
BDF1	YLR399C	MTC5	Q03897	1148 aa		13.38	□□□□□ -0.27
BDF1	YLR399C	TAF9	Q05027	157 aa		13.38	□□□□□ -0.27
BDF1	YLR399C	MRD1	Q06106	887 aa	Known RBP	13.38	□□□□□ -0.27
BDF1	YLR399C	YLR271W	Q06152	274 aa		13.38	□□□□□ -0.27
BDF1	YLR399C	RIB2	Q12362	591 aa	Known RBP	13.38	□□□□□ -0.27
BDF1	YLR399C	SNU66	Q12420	587 aa	Predicted RBP	13.38	□□□□□ -0.27
BDF1	YLR399C	KAR3	P17119	729 aa		13.37	□□□□□ -0.27
BDF1	YLR399C	MCM3	P24279	971 aa	Known RBP	13.37	□□□□□ -0.27
BDF1	YLR399C	TDA3	P38758	523 aa		13.37	□□□□□ -0.27
BDF1	YLR399C	LAM1	P38851	1228 aa		13.37	□□□□□ -0.27
BDF1	YLR399C	TAH18	Q12181	623 aa		13.37	□□□□□ -0.27
BDF1	YLR399C	SUP35	P05453	685 aa	Known RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	GCG1	P32656	232 aa	Known RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	SPC24	Q04477	213 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	FAR8	Q05040	523 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	PIG1	Q06216	648 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	NKP1	Q12493	238 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	HIS4	P00815	799 aa	Known RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	PYC1	P11154	1178 aa	Known RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	TFC3	P34111	1160 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	13.36	□□□□□ -0.27	RIP-Chip
BDF1	YLR399C	YBR062C	P38239	180 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	LYS14	P40971	790 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	TMA22	P47089	198 aa	Predicted RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	RPT6	Q01939	405 aa	Known RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	MAG2	Q06436	670 aa	Known RBP	13.36	□□□□□ -0.27
BDF1	YLR399C	NBL1	Q3E7Y6	73 aa		13.36	□□□□□ -0.27
BDF1	YLR399C	OSM1	P21375	501 aa	Known RBP	13.35	□□□□□ -0.27
BDF1	YLR399C	YKU80	Q04437	629 aa		13.35	□□□□□ -0.27
BDF1	YLR399C	RPT3	P33298	428 aa	Known RBP	13.35	□□□□□ -0.27
BDF1	YLR399C	SQT1	P35184	431 aa		13.35	□□□□□ -0.27
BDF1	YLR399C	DSF2	P38213	736 aa		13.35	□□□□□ -0.27

Retrieved 100 of 5,963 RNA–protein pairs in 67.6 ms