RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C TY1A-MR1Q04215 440 aa3.07□□□□□ -1.92
UBP11YKR098C EST2Q06163 884 aa3.07□□□□□ -1.92
UBP11YKR098C YLR125WQ12138 136 aa3.07□□□□□ -1.92
UBP11YKR098C YDR461C-AQ2V2P7 80 aa3.07□□□□□ -1.92
UBP11YKR098C CAN1P04817 590 aa3.06□□□□□ -1.92
UBP11YKR098C DED1P06634 604 aaKnown RBP3.06□□□□□ -1.92
UBP11YKR098C ERR1P0CX10 437 aa3.06□□□□□ -1.92
UBP11YKR098C ERR2P0CX11 437 aa3.06□□□□□ -1.92
UBP11YKR098C HSP60P19882 572 aaKnown RBP3.06□□□□□ -1.92
UBP11YKR098C MOT2P34909 587 aaKnown RBP3.06□□□□□ -1.92
UBP11YKR098C NEM1P38757 446 aa3.06□□□□□ -1.92
UBP11YKR098C SLS1P42900 643 aa3.06□□□□□ -1.92
UBP11YKR098C UTP22P53254 1237 aaPredicted RBP3.06□□□□□ -1.92
UBP11YKR098C ADE12P80210 433 aaKnown RBP3.06□□□□□ -1.92
UBP11YKR098C CIT1P00890 479 aa3.05□□□□□ -1.92
UBP11YKR098C INO1P11986 533 aa3.05□□□□□ -1.92
UBP11YKR098C SYP1P25623 870 aaKnown RBP3.05□□□□□ -1.92
UBP11YKR098C ADD66P36040 267 aa3.05□□□□□ -1.92
UBP11YKR098C PBY1P38254 753 aa3.05□□□□□ -1.92
UBP11YKR098C GGA2P38817 585 aaKnown RBP3.05□□□□□ -1.92
UBP11YKR098C LYS5P50113 272 aa3.05□□□□□ -1.92
UBP11YKR098C ERP6P53198 216 aa3.05□□□□□ -1.92
UBP11YKR098C RAT1Q02792 1006 aaKnown RBP3.05□□□□□ -1.92
UBP11YKR098C EAF1Q06337 982 aa3.05□□□□□ -1.92
UBP11YKR098C YPL066WQ12194 479 aa3.05□□□□□ -1.92
UBP11YKR098C GAL11P19659 1081 aa3.05□□□□□ -1.92
UBP11YKR098C NEO1P40527 1151 aa3.05□□□□□ -1.92
UBP11YKR098C LEM3P42838 414 aa3.05□□□□□ -1.92
UBP11YKR098C YJR142WP47173 342 aa3.05□□□□□ -1.92
UBP11YKR098C UTP8P53276 713 aaKnown RBP3.05□□□□□ -1.92
UBP11YKR098C UTP14Q04500 899 aaKnown RBP3.05□□□□□ -1.92
UBP11YKR098C SYT1Q06836 1226 aa3.05□□□□□ -1.92
UBP11YKR098C RKM4Q12504 494 aa3.05□□□□□ -1.92
UBP11YKR098C DBP5P20449 482 aaKnown RBP3.04□□□□□ -1.92
UBP11YKR098C TSR4P25040 408 aa3.04□□□□□ -1.92
UBP11YKR098C PUF4P25339 888 aaKnown RBP RIP-Chip data3.04□□□□□ -1.92not detected
UBP11YKR098C ARE1P25628 610 aa3.04□□□□□ -1.92
UBP11YKR098C THI4P32318 326 aa3.04□□□□□ -1.92
UBP11YKR098C AFG2P32794 780 aa3.04□□□□□ -1.92
UBP11YKR098C PIN4P34217 668 aaKnown RBP RIP-Chip data3.04□□□□□ -1.92not detected
UBP11YKR098C ARL1P38116 183 aaKnown RBP3.04□□□□□ -1.92
UBP11YKR098C CNN1P43618 361 aa3.04□□□□□ -1.92
UBP11YKR098C YGL176CP46945 554 aa3.04□□□□□ -1.92
UBP11YKR098C MTR4P47047 1073 aaKnown RBP3.04□□□□□ -1.92
UBP11YKR098C TAF8Q03750 510 aa3.04□□□□□ -1.92
UBP11YKR098C RKM2Q03942 479 aa3.04□□□□□ -1.92
UBP11YKR098C LCB5Q06147 687 aaKnown RBP3.04□□□□□ -1.92
UBP11YKR098C AOS1Q06624 347 aa3.04□□□□□ -1.92
UBP11YKR098C YGR161W-CQ3E744 92 aa3.04□□□□□ -1.92
UBP11YKR098C HUL4P40985 892 aa3.04□□□□□ -1.92
UBP11YKR098C GCV1P48015 400 aa3.04□□□□□ -1.92
UBP11YKR098C SOK2P53438 785 aaPredicted RBP3.04□□□□□ -1.92
UBP11YKR098C MEC3Q02574 474 aa3.04□□□□□ -1.92
UBP11YKR098C UBX5Q06682 500 aa3.04□□□□□ -1.92
UBP11YKR098C GAR1P28007 205 aaKnown RBP3.03□□□□□ -1.92
UBP11YKR098C MET22P32179 357 aa3.03□□□□□ -1.92
UBP11YKR098C GRX4P32642 244 aa3.03□□□□□ -1.92
UBP11YKR098C YKL107WP34251 309 aa3.03□□□□□ -1.92
UBP11YKR098C BET3P36149 193 aa3.03□□□□□ -1.92
UBP11YKR098C PAN5P38787 379 aa3.03□□□□□ -1.92
UBP11YKR098C MBP1P39678 833 aa3.03□□□□□ -1.92
UBP11YKR098C GIP2P40036 548 aa3.03□□□□□ -1.92
UBP11YKR098C MPH1P40562 993 aa3.03□□□□□ -1.92
UBP11YKR098C MSH4P40965 878 aaPredicted RBP3.03□□□□□ -1.92
UBP11YKR098C RTA1P53047 317 aa3.03□□□□□ -1.92
UBP11YKR098C YDR444WQ04093 687 aa3.03□□□□□ -1.92
UBP11YKR098C PRP9P19736 530 aaKnown RBP3.02□□□□□ -1.93
UBP11YKR098C MCM7P38132 845 aa3.02□□□□□ -1.93
UBP11YKR098C ALG3P38179 458 aa3.02□□□□□ -1.93
UBP11YKR098C CEM1P39525 442 aa3.02□□□□□ -1.93
UBP11YKR098C POL5P39985 1022 aaKnown RBP3.02□□□□□ -1.93
UBP11YKR098C ALR2P43553 858 aa3.02□□□□□ -1.93
UBP11YKR098C SPO74P45819 413 aa3.02□□□□□ -1.93
UBP11YKR098C YGL081WP53156 320 aa3.02□□□□□ -1.93
UBP11YKR098C SPO71Q03868 1245 aa3.02□□□□□ -1.93
UBP11YKR098C NAR1P23503 491 aaKnown RBP3.02□□□□□ -1.93
UBP11YKR098C REI1P38344 393 aaPredicted RBP3.02□□□□□ -1.93
UBP11YKR098C ACO2P39533 789 aa3.02□□□□□ -1.93
UBP11YKR098C SNF7P39929 240 aaKnown RBP3.02□□□□□ -1.93
UBP11YKR098C SIP5P40210 489 aaKnown RBP3.02□□□□□ -1.93
UBP11YKR098C YIR007WP40566 764 aa3.02□□□□□ -1.93
UBP11YKR098C YNR063WP53749 607 aa3.02□□□□□ -1.93
UBP11YKR098C DNM1P54861 757 aa3.02□□□□□ -1.93
UBP11YKR098C SLP1Q12232 587 aa3.02□□□□□ -1.93
UBP11YKR098C NOP14Q99207 810 aaKnown RBP3.02□□□□□ -1.93
UBP11YKR098C PDC5P16467 563 aaKnown RBP3.01□□□□□ -1.93
UBP11YKR098C MSH2P25847 964 aa3.01□□□□□ -1.93
UBP11YKR098C MLS1P30952 554 aa3.01□□□□□ -1.93
UBP11YKR098C KNS1P32350 737 aaPredicted RBP3.01□□□□□ -1.93
UBP11YKR098C HBS1P32769 611 aaKnown RBP3.01□□□□□ -1.93
UBP11YKR098C TOM20P35180 183 aa3.01□□□□□ -1.93
UBP11YKR098C ATG14P38270 344 aa3.01□□□□□ -1.93
UBP11YKR098C RGD1P38339 666 aa3.01□□□□□ -1.93
UBP11YKR098C HNT2P49775 206 aa3.01□□□□□ -1.93
UBP11YKR098C GIS4Q04233 774 aa3.01□□□□□ -1.93
UBP11YKR098C SSB1P11484 613 aaKnown RBP3.01□□□□□ -1.93
UBP11YKR098C UBP12P39538 1254 aa3.01□□□□□ -1.93
UBP11YKR098C SSB2P40150 613 aaKnown RBP3.01□□□□□ -1.93
UBP11YKR098C TED1P40533 473 aa3.01□□□□□ -1.93
UBP11YKR098C ATG36P46983 293 aa3.01□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 54.6 ms