RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	TY1A-DR4	O74302	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-H	P0C2I4	478 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-A	P0CX57	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-PR1	P0CX58	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-OR	P0CX59	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-PR2	P0CX60	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-DR5	P0CX65	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-ER2	P0CX66	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-GR3	P0CX67	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-LR1	P0CX68	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-MR2	P0CX69	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	SEC2	P17065	759 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	BAS1	P22035	811 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	MCM5	P29496	775 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	SPT16	P32558	1035 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	EBP2	P36049	427 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-JR2	P47099	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	YJR115W	P47152	169 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	HOL1	P53389	586 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	UGO1	Q03327	502 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-DR1	Q03856	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-ML1	Q04706	440 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	ISR1	Q06098	443 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	FAL1	Q12099	399 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-BR	Q12217	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	BMT6	Q12291	365 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-NL2	Q12470	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	TY1A-GR2	Q12485	440 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	GDB1	Q06625	1536 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	COB	P00163	385 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	CDC31	P06704	161 aa	Known RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	URA1	P28272	314 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	KIP2	P28743	706 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	APL2	P36000	726 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	ULI1	P43604	169 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	RSC8	P43609	557 aa	Known RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	SUT1	P53032	299 aa	Known RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	REH1	Q06709	432 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	YPR097W	Q06839	1073 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	NOC3	Q07896	663 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	HEM13	P11353	328 aa	Known RBP	4.37	□□□□□ -1.71
NUP85	YJR042W	ATG3	P40344	310 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	GRC3	Q07845	632 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	SSP2	Q08646	371 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	YDR056C	Q12025	205 aa		4.37	□□□□□ -1.71
NUP85	YJR042W	RPS6A	P0CX37	236 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	RPS6B	P0CX38	236 aa	Predicted RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	TPM1	P17536	199 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	HSP60	P19882	572 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	PRP40	P33203	583 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	DUR3	P33413	735 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	KTR4	P38131	464 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	GDH3	P39708	457 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	HXT13	P39924	564 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	MRPS18	P42847	217 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	MTR4	P47047	1073 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	PMT3	P47190	753 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	HLJ1	P48353	224 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	RPA14	P50106	137 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	UBA2	P52488	636 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	HXT17	P53631	564 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	HXT15	P54854	567 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	CTR9	P89105	1077 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	BSC2	Q05611	235 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	INP54	Q08227	384 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	OXR1	Q08952	273 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	MCD1	Q12158	566 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	IQG1	Q12280	1495 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	SPO14	P36126	1683 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	SWI5	P08153	709 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	DBF20	P32328	564 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	SSH4	P32343	579 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	MCM10	P32354	571 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	ABD1	P32783	436 aa	Predicted RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	VBA5	P36172	582 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	GPP2	P40106	250 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	MGS1	P40151	587 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	EMW1	P42842	904 aa	Known RBP	4.36	□□□□□ -1.71
NUP85	YJR042W	CIA1	Q05583	330 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	ALR1	Q08269	859 aa		4.36	□□□□□ -1.71
NUP85	YJR042W	MMS1	Q06211	1407 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	SBP1	P10080	294 aa	Known RBP	4.35	□□□□□ -1.71
NUP85	YJR042W	MRPL33	P20084	86 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	STO1	P34160	861 aa	Known RBP	4.35	□□□□□ -1.71
NUP85	YJR042W	TRZ1	P36159	838 aa	Predicted RBP	4.35	□□□□□ -1.71
NUP85	YJR042W	YHL041W	P38730	149 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	GGA2	P38817	585 aa	Known RBP	4.35	□□□□□ -1.71
NUP85	YJR042W	MEP1	P40260	492 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	RGD2	P43556	714 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	HSV2	P50079	448 aa	Predicted RBP	4.35	□□□□□ -1.71
NUP85	YJR042W	PKH1	Q03407	766 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	SDH5	Q08230	162 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	LDB19	Q12502	818 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	YRF1-1	P0CX20	1796 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	YRF1-5	P0CX21	1796 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	YRF1-8	P0CX22	1796 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	NUP145	P49687	1317 aa		4.35	□□□□□ -1.71
NUP85	YJR042W	PDC1	P06169	563 aa	Known RBP	4.34	□□□□□ -1.71
NUP85	YJR042W	NAT1	P12945	854 aa	Known RBP	4.34	□□□□□ -1.71
NUP85	YJR042W	AGP1	P25376	633 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 18.5 ms