RNA–Protein interactions for RNA: YHR150W

PEX28, Transcript of Peroxisomal integral membrane peroxin, yeastyeast

Gene PEX28, Length 1,740 nt, Biotype protein coding, Subcellular localisation Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEX28YHR150W YOR111WQ99210 232 aa8.37□□□□□ -1.07
PEX28YHR150W CDC37P06101 506 aaKnown RBP8.37□□□□□ -1.07
PEX28YHR150W YET1P35723 206 aa8.37□□□□□ -1.07
PEX28YHR150W REI1P38344 393 aaPredicted RBP8.37□□□□□ -1.07
PEX28YHR150W GDE1Q02979 1223 aa8.37□□□□□ -1.07
PEX28YHR150W RBA50Q04418 439 aa8.37□□□□□ -1.07
PEX28YHR150W DPL1Q05567 589 aa8.37□□□□□ -1.07
PEX28YHR150W VPS38Q05919 439 aa8.37□□□□□ -1.07
PEX28YHR150W ACK1Q07622 623 aaPredicted RBP8.37□□□□□ -1.07
PEX28YHR150W PSR2Q07949 397 aa8.37□□□□□ -1.07
PEX28YHR150W TLG2Q08144 397 aa8.37□□□□□ -1.07
PEX28YHR150W ATG9Q12142 997 aa8.37□□□□□ -1.07
PEX28YHR150W ACE2P21192 770 aa8.36□□□□□ -1.07
PEX28YHR150W MCM3P24279 971 aaKnown RBP8.36□□□□□ -1.07
PEX28YHR150W PRO3P32263 286 aaKnown RBP8.36□□□□□ -1.07
PEX28YHR150W AFG2P32794 780 aa8.36□□□□□ -1.07
PEX28YHR150W PXL1P36166 706 aa8.36□□□□□ -1.07
PEX28YHR150W SMC3P47037 1230 aa8.36□□□□□ -1.07
PEX28YHR150W YGR237CP50089 785 aa8.36□□□□□ -1.07
PEX28YHR150W KIN4Q01919 800 aa8.36□□□□□ -1.07
PEX28YHR150W GIN4Q12263 1142 aa8.36□□□□□ -1.07
PEX28YHR150W RNR3P21672 869 aaKnown RBP8.35□□□□□ -1.07
PEX28YHR150W RPL8BP29453 256 aaKnown RBP8.35□□□□□ -1.07
PEX28YHR150W SHM1P37292 490 aaPredicted RBP8.35□□□□□ -1.07
PEX28YHR150W YGR130CP53278 816 aa8.35□□□□□ -1.07
PEX28YHR150W ALF1P53904 254 aa8.35□□□□□ -1.07
PEX28YHR150W RPT6Q01939 405 aaKnown RBP8.35□□□□□ -1.07
PEX28YHR150W MET6P05694 767 aaKnown RBP8.34□□□□□ -1.07
PEX28YHR150W RPS6AP0CX37 236 aaKnown RBP8.34□□□□□ -1.07
PEX28YHR150W RPS6BP0CX38 236 aaPredicted RBP8.34□□□□□ -1.07
PEX28YHR150W STE11P23561 717 aa8.34□□□□□ -1.07
PEX28YHR150W NDC80P40460 691 aa8.34□□□□□ -1.07
PEX28YHR150W LYS14P40971 790 aa8.34□□□□□ -1.07
PEX28YHR150W FYV8P46949 817 aaKnown RBP8.34□□□□□ -1.07
PEX28YHR150W LSC2P53312 427 aa8.34□□□□□ -1.07
PEX28YHR150W GIS4Q04233 774 aa8.34□□□□□ -1.07
PEX28YHR150W YDR341CQ05506 607 aaKnown RBP8.34□□□□□ -1.07
PEX28YHR150W FIG2P25653 1609 aa8.34□□□□□ -1.07
PEX28YHR150W HIS4P00815 799 aaKnown RBP8.34□□□□□ -1.07
PEX28YHR150W CIT1P00890 479 aa8.34□□□□□ -1.07
PEX28YHR150W CLB5P30283 435 aa8.34□□□□□ -1.07
PEX28YHR150W ASF1P32447 279 aa8.34□□□□□ -1.07
PEX28YHR150W CTM1P38818 585 aa8.34□□□□□ -1.07
PEX28YHR150W YOR296WQ08748 1289 aa8.34□□□□□ -1.07
PEX28YHR150W DEP1P31385 405 aa8.33□□□□□ -1.08
PEX28YHR150W NAF1P53919 492 aaKnown RBP8.33□□□□□ -1.08
PEX28YHR150W EBS1Q03466 884 aaKnown RBP8.33□□□□□ -1.08
PEX28YHR150W MYO5Q04439 1219 aaKnown RBP8.33□□□□□ -1.08
PEX28YHR150W STI1P15705 589 aaKnown RBP RIP-Chip data8.32□□□□□ -1.08not detected
PEX28YHR150W DPB3P27344 201 aa8.32□□□□□ -1.08
PEX28YHR150W PSO2P30620 661 aa8.32□□□□□ -1.08
PEX28YHR150W SML1Q04964 104 aa8.32□□□□□ -1.08
PEX28YHR150W RRP6Q12149 733 aaKnown RBP8.32□□□□□ -1.08
PEX28YHR150W CEX1Q12453 761 aa8.32□□□□□ -1.08
PEX28YHR150W ALG1P16661 449 aa8.32□□□□□ -1.08
PEX28YHR150W CLB1P24868 471 aa8.32□□□□□ -1.08
PEX28YHR150W HIR1P32479 840 aa8.32□□□□□ -1.08
PEX28YHR150W EFM2P38347 419 aa8.32□□□□□ -1.08
PEX28YHR150W CCC2P38995 1004 aa8.32□□□□□ -1.08
PEX28YHR150W ATG3P40344 310 aa8.32□□□□□ -1.08
PEX28YHR150W VPS30Q02948 557 aa8.32□□□□□ -1.08
PEX28YHR150W GYL1Q04322 720 aa8.32□□□□□ -1.08
PEX28YHR150W SMD2Q06217 110 aaKnown RBP8.32□□□□□ -1.08
PEX28YHR150W SPP382Q06411 708 aaPredicted RBP8.32□□□□□ -1.08
PEX28YHR150W HMI1Q12039 706 aa8.32□□□□□ -1.08
PEX28YHR150W MSM1P22438 575 aa8.31□□□□□ -1.08
PEX28YHR150W RRP1P35178 278 aaPredicted RBP8.31□□□□□ -1.08
PEX28YHR150W SPT21P35209 758 aa8.31□□□□□ -1.08
PEX28YHR150W BCD1P38772 366 aa8.31□□□□□ -1.08
PEX28YHR150W VPS41P38959 992 aa8.31□□□□□ -1.08
PEX28YHR150W CCT4P39078 528 aaKnown RBP8.31□□□□□ -1.08
PEX28YHR150W CRF1Q04930 467 aa8.31□□□□□ -1.08
PEX28YHR150W YLR287CQ05881 355 aa8.31□□□□□ -1.08
PEX28YHR150W TIP41Q12199 356 aa8.31□□□□□ -1.08
PEX28YHR150W SRM1P21827 482 aa8.3□□□□□ -1.08
PEX28YHR150W SPO11P23179 398 aa8.3□□□□□ -1.08
PEX28YHR150W PRE8P23639 250 aa8.3□□□□□ -1.08
PEX28YHR150W MRPL32P25348 183 aa8.3□□□□□ -1.08
PEX28YHR150W MIP6P38760 659 aaKnown RBP8.3□□□□□ -1.08
PEX28YHR150W SHC1P39000 512 aa8.3□□□□□ -1.08
PEX28YHR150W MVP1P40959 511 aaKnown RBP8.3□□□□□ -1.08
PEX28YHR150W AIP1P46680 615 aaKnown RBP8.3□□□□□ -1.08
PEX28YHR150W YGL138CP53122 345 aa8.3□□□□□ -1.08
PEX28YHR150W FOL1P53848 824 aa8.3□□□□□ -1.08
PEX28YHR150W RTC4P53850 401 aa8.3□□□□□ -1.08
PEX28YHR150W BOP3P53958 396 aa8.3□□□□□ -1.08
PEX28YHR150W ERG5P54781 538 aa8.3□□□□□ -1.08
PEX28YHR150W MRS2Q01926 470 aa8.3□□□□□ -1.08
PEX28YHR150W TRM44Q02648 567 aaKnown RBP8.3□□□□□ -1.08
PEX28YHR150W YDL124WQ07551 312 aaKnown RBP8.3□□□□□ -1.08
PEX28YHR150W PCL8Q08966 492 aa8.3□□□□□ -1.08
PEX28YHR150W FLO11P08640 1367 aa8.29□□□□□ -1.08
PEX28YHR150W MTF2P10849 440 aa8.29□□□□□ -1.08
PEX28YHR150W SEC23P15303 768 aaKnown RBP8.29□□□□□ -1.08
PEX28YHR150W SPO12P17123 173 aa8.29□□□□□ -1.08
PEX28YHR150W RPO26P20435 155 aa8.29□□□□□ -1.08
PEX28YHR150W MSH1P25846 959 aa8.29□□□□□ -1.08
PEX28YHR150W FLO1P32768 1537 aa8.29□□□□□ -1.08
PEX28YHR150W YBL028CP38202 106 aa8.29□□□□□ -1.08
PEX28YHR150W GDT1P38301 280 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms