RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 RPAP2Q8IXW5 612 aaPredicted RBP20.12■□□□□ 0.81
SHMT2-232ENST00000557487 TSPYL6Q8N831 410 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 CD2BP2O95400 341 aaKnown RBP20.12■□□□□ 0.81
SHMT2-232ENST00000557487 GLIPR1L2Q4G1C9 344 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 TTC22Q5TAA0 569 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 CASC1Q6TDU7 716 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 GAS2L3Q86XJ1 694 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 GAS2L2Q8NHY3 880 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 C1orf115Q9H7X2 142 aa20.12■□□□□ 0.81
SHMT2-232ENST00000557487 BAG4O95429 457 aaKnown RBP20.11■□□□□ 0.81
SHMT2-232ENST00000557487 CERKQ8TCT0 537 aa20.11■□□□□ 0.81
SHMT2-232ENST00000557487 RRP9O43818 475 aaKnown RBP20.1■□□□□ 0.81
SHMT2-232ENST00000557487 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.1■□□□□ 0.81
SHMT2-232ENST00000557487 ANKRD44Q8N8A2 993 aa20.1■□□□□ 0.81
SHMT2-232ENST00000557487 HMOX1P09601 288 aa20.09■□□□□ 0.81
SHMT2-232ENST00000557487 GSPT1P15170 499 aaKnown RBP20.09■□□□□ 0.81
SHMT2-232ENST00000557487 SSFA2P28290 1259 aa20.09■□□□□ 0.81
SHMT2-232ENST00000557487 ZNF445P59923 1031 aa20.09■□□□□ 0.81
SHMT2-232ENST00000557487 TBX22Q9Y458 520 aa20.09■□□□□ 0.81
SHMT2-232ENST00000557487 CPS1P31327 1500 aa20.08■□□□□ 0.8
SHMT2-232ENST00000557487 TPM2P07951 284 aa20.08■□□□□ 0.8
SHMT2-232ENST00000557487 NASPP49321 788 aaPredicted RBP20.08■□□□□ 0.8
SHMT2-232ENST00000557487 USP26Q9BXU7 913 aa20.08■□□□□ 0.8
SHMT2-232ENST00000557487 DDX49Q9Y6V7 483 aaKnown RBP20.08■□□□□ 0.8
SHMT2-232ENST00000557487 ADAMTS13Q76LX8 1427 aa20.07■□□□□ 0.8
SHMT2-232ENST00000557487 CYP2E1P05181 493 aaPredicted RBP20.07■□□□□ 0.8
SHMT2-232ENST00000557487 HS1BP3Q53T59 392 aa20.07■□□□□ 0.8
SHMT2-232ENST00000557487 C8orf58Q8NAV2 365 aa20.07■□□□□ 0.8
SHMT2-232ENST00000557487 SLC26A8Q96RN1 970 aa20.07■□□□□ 0.8
SHMT2-232ENST00000557487 THUMPD2Q9BTF0 503 aaKnown RBP20.07■□□□□ 0.8
SHMT2-232ENST00000557487 KIAA0232Q92628 1395 aa20.06■□□□□ 0.8
SHMT2-232ENST00000557487 PTPRCP08575 1304 aa20.06■□□□□ 0.8
SHMT2-232ENST00000557487 KNDC1Q76NI1 1749 aa20.06■□□□□ 0.8
SHMT2-232ENST00000557487 DLG5Q8TDM6 1919 aa20.06■□□□□ 0.8
SHMT2-232ENST00000557487 ST18O60284 1047 aa20.06■□□□□ 0.8
SHMT2-232ENST00000557487 RBM42Q9BTD8 480 aaKnown RBP20.06■□□□□ 0.8
SHMT2-232ENST00000557487 SETD1AO15047 1707 aaKnown RBP20.05■□□□□ 0.8
SHMT2-232ENST00000557487 REC8O95072 547 aa20.05■□□□□ 0.8
SHMT2-232ENST00000557487 EMILIN1Q9Y6C2 1016 aa20.05■□□□□ 0.8
SHMT2-232ENST00000557487 ATP10DQ9P241 1426 aa20.05■□□□□ 0.8
SHMT2-232ENST00000557487 DIP2AQ14689 1571 aa20.05■□□□□ 0.8
SHMT2-232ENST00000557487 ERBB4Q15303 1308 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 NRKQ7Z2Y5 1582 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 SIRT1Q96EB6 747 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 COG3Q96JB2 828 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 MON2Q7Z3U7 1717 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 KCNA6P17658 529 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 ZSCAN30Q86W11 494 aa20.04■□□□□ 0.8
SHMT2-232ENST00000557487 WASLO00401 505 aaPredicted RBP20.03■□□□□ 0.8
SHMT2-232ENST00000557487 FOXD4L1Q9NU39 408 aa20.03■□□□□ 0.8
SHMT2-232ENST00000557487 ELL2O00472 640 aaPredicted RBP20.02■□□□□ 0.8
SHMT2-232ENST00000557487 NRXN3Q9Y4C0 1643 aa20.01■□□□□ 0.79
SHMT2-232ENST00000557487 TERF1P54274 439 aa20.01■□□□□ 0.79
SHMT2-232ENST00000557487 RGS12O14924 1447 aa20.01■□□□□ 0.79
SHMT2-232ENST00000557487 STRCP1A6NGW2 1772 aa20.01■□□□□ 0.79
SHMT2-232ENST00000557487 HMMRO75330 724 aa20■□□□□ 0.79
SHMT2-232ENST00000557487 HSP90AA2PQ14568 343 aaPredicted RBP20■□□□□ 0.79
SHMT2-232ENST00000557487 CEP85Q6P2H3 762 aa20■□□□□ 0.79
SHMT2-232ENST00000557487 NWD1Q149M9 1564 aa19.99■□□□□ 0.79
SHMT2-232ENST00000557487 CHL1O00533 1208 aa19.99■□□□□ 0.79
SHMT2-232ENST00000557487 NME9Q86XW9 330 aa19.99■□□□□ 0.79
SHMT2-232ENST00000557487 OSBPL3Q9H4L5 887 aa19.99■□□□□ 0.79
SHMT2-232ENST00000557487 LMBRD1Q9NUN5 540 aa19.99■□□□□ 0.79
SHMT2-232ENST00000557487 RTL1A6NKG5 1358 aa19.99■□□□□ 0.79
SHMT2-232ENST00000557487 MCM2P49736 904 aa19.98■□□□□ 0.79
SHMT2-232ENST00000557487 AKAP12Q02952 1782 aa19.98■□□□□ 0.79
SHMT2-232ENST00000557487 SDSP20132 328 aa19.98■□□□□ 0.79
SHMT2-232ENST00000557487 MCTP1Q6DN14 999 aa19.98■□□□□ 0.79
SHMT2-232ENST00000557487 WAPLQ7Z5K2 1190 aa19.98■□□□□ 0.79
SHMT2-232ENST00000557487 CCDC61Q9Y6R9 512 aa19.98■□□□□ 0.79
SHMT2-232ENST00000557487 TECPR2O15040 1411 aa19.97■□□□□ 0.79
SHMT2-232ENST00000557487 ERC2O15083 957 aa19.97■□□□□ 0.79
SHMT2-232ENST00000557487 FBLN1P23142 703 aa19.97■□□□□ 0.79
SHMT2-232ENST00000557487 FBXO41Q8TF61 875 aa19.97■□□□□ 0.79
SHMT2-232ENST00000557487 SENP3Q9H4L4 574 aaPredicted RBP19.97■□□□□ 0.79
SHMT2-232ENST00000557487 MSNP26038 577 aaKnown RBP19.96■□□□□ 0.79
SHMT2-232ENST00000557487 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.96■□□□□ 0.79
SHMT2-232ENST00000557487 ZSCAN23Q3MJ62 389 aa19.96■□□□□ 0.79
SHMT2-232ENST00000557487 CHD2O14647 1828 aaKnown RBP19.95■□□□□ 0.78
SHMT2-232ENST00000557487 OFD1O75665 1012 aa19.95■□□□□ 0.78
SHMT2-232ENST00000557487 NUDT16Q96DE0 195 aaKnown RBP19.95■□□□□ 0.78
SHMT2-232ENST00000557487 ITSN1Q15811 1721 aa19.95■□□□□ 0.78
SHMT2-232ENST00000557487 PDLIM2Q96JY6 352 aa19.94■□□□□ 0.78
SHMT2-232ENST00000557487 MSH6P52701 1360 aa19.94■□□□□ 0.78
SHMT2-232ENST00000557487 FAM83GA6ND36 823 aa19.93■□□□□ 0.78
SHMT2-232ENST00000557487 METP08581 1390 aa19.93■□□□□ 0.78
SHMT2-232ENST00000557487 MCM5P33992 734 aa19.93■□□□□ 0.78
SHMT2-232ENST00000557487 CAVIN1Q6NZI2 390 aaKnown RBP19.93■□□□□ 0.78
SHMT2-232ENST00000557487 C16orf71Q8IYS4 520 aaPredicted RBP19.93■□□□□ 0.78
SHMT2-232ENST00000557487 PTPRUQ92729 1446 aa19.92■□□□□ 0.78
SHMT2-232ENST00000557487 MBD3O95983 291 aa19.92■□□□□ 0.78
SHMT2-232ENST00000557487 CCT4P50991 539 aaKnown RBP19.92■□□□□ 0.78
SHMT2-232ENST00000557487 ARHGEF10O15013 1369 aa19.91■□□□□ 0.78
SHMT2-232ENST00000557487 AMOTL2Q9Y2J4 779 aa19.91■□□□□ 0.78
SHMT2-232ENST00000557487 EPB41L2O43491 1005 aaKnown RBP19.9■□□□□ 0.78
SHMT2-232ENST00000557487 ANAPC15P60006 121 aa19.9■□□□□ 0.78
SHMT2-232ENST00000557487 NOL7Q9UMY1 257 aaKnown RBP19.9■□□□□ 0.78
SHMT2-232ENST00000557487 MCCP23508 829 aa19.9■□□□□ 0.78
SHMT2-232ENST00000557487 RRS1Q15050 365 aaKnown RBP19.9■□□□□ 0.78
SHMT2-232ENST00000557487 PROSER2Q86WR7 435 aaPredicted RBP19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms