RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 NBPF3Q9H094 633 aa3.83□□□□□ -1.8
PRPF39-206ENST00000554429 METP08581 1390 aa3.83□□□□□ -1.8
PRPF39-206ENST00000554429 USP32Q8NFA0 1604 aa3.83□□□□□ -1.8
PRPF39-206ENST00000554429 TRPM3Q9HCF6 1732 aaPredicted RBP3.83□□□□□ -1.8
PRPF39-206ENST00000554429 BRWD3Q6RI45 1802 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 ATAD2Q6PL18 1390 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 ATF3P18847 181 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 RXRBP28702 533 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 PSEN2P49810 448 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 CCDC125Q86Z20 511 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 CERS3Q8IU89 383 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 RGS22Q8NE09 1264 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 RSPH6AQ9H0K4 717 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 AMOTL2Q9Y2J4 779 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 RGPD1P0DJD0 1748 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 ALS2Q96Q42 1657 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 GLI3P10071 1580 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 SLIT2O94813 1529 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 NAIPQ13075 1403 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 RBM6P78332 1123 aaKnown RBP3.82□□□□□ -1.8
PRPF39-206ENST00000554429 AAMPQ13685 434 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 TICAM2Q86XR7 235 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 FAM177A1Q8N128 213 aaPredicted RBP3.82□□□□□ -1.8
PRPF39-206ENST00000554429 PRDM10Q9NQV6 1147 aa3.82□□□□□ -1.8
PRPF39-206ENST00000554429 KIF3CO14782 793 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 ZNF326Q5BKZ1 582 aaKnown RBP3.81□□□□□ -1.8
PRPF39-206ENST00000554429 SPRYD3Q8NCJ5 442 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 RGPD3A6NKT7 1758 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-206ENST00000554429 RGPD4Q7Z3J3 1758 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 SPATA31E1Q6ZUB1 1445 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 NUP155O75694 1391 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 AFF2P51816 1311 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 THSD7AQ9UPZ6 1657 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 PPP1R15AO75807 674 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-206ENST00000554429 NEUROD2Q15784 382 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 BCL9LQ86UU0 1499 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 PPM1GO15355 546 aaPredicted RBP3.81□□□□□ -1.8
PRPF39-206ENST00000554429 WFS1O76024 890 aa3.81□□□□□ -1.8
PRPF39-206ENST00000554429 COL14A1Q05707 1796 aaKnown RBP3.8□□□□□ -1.8
PRPF39-206ENST00000554429 TNS1Q9HBL0 1735 aaKnown RBP3.8□□□□□ -1.8
PRPF39-206ENST00000554429 ABCC11Q96J66 1382 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 APBB1O00213 710 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 AEBP1Q8IUX7 1158 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 RREB1Q92766 1687 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 DISP2A7MBM2 1401 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 PIK3C2GO75747 1445 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 LRPPRCP42704 1394 aaKnown RBP3.8□□□□□ -1.8
PRPF39-206ENST00000554429 ROBO2Q9HCK4 1378 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 ITSN1Q15811 1721 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 ANKK1Q8NFD2 765 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 ANKARQ7Z5J8 1434 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 SBNO1A3KN83 1393 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 ANKRD30BQ9BXX2 1392 aa3.8□□□□□ -1.8
PRPF39-206ENST00000554429 KIAA1210Q9ULL0 1709 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 TOPAZ1Q8N9V7 1692 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 ONECUT3O60422 494 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-206ENST00000554429 PSMD1Q99460 953 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 CHIC2Q9UKJ5 165 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 PDZRN3Q9UPQ7 1066 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 RGPD8O14715 1765 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-206ENST00000554429 CCDC144AA2RUR9 1427 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 VGFO15240 615 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-206ENST00000554429 MEX3CQ5U5Q3 659 aaKnown RBP3.79□□□□□ -1.8
PRPF39-206ENST00000554429 NGLY1Q96IV0 654 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 PRKD2Q9BZL6 878 aa3.79□□□□□ -1.8
PRPF39-206ENST00000554429 TRPC5Q9UL62 973 aaPredicted RBP3.79□□□□□ -1.8
PRPF39-206ENST00000554429 BLMP54132 1417 aaPredicted RBP3.78□□□□□ -1.8
PRPF39-206ENST00000554429 TBC1D12O60347 775 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 EFCAB3Q8N7B9 438 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 LAPTM4BQ86VI4 370 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 PRDM16Q9HAZ2 1276 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 RALGAPBQ86X10 1494 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 ADGRB1O14514 1584 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 NPHP3Q7Z494 1330 aa3.78□□□□□ -1.8
PRPF39-206ENST00000554429 PHRF1Q9P1Y6 1649 aaKnown RBP3.78□□□□□ -1.8
PRPF39-206ENST00000554429 IFNLR1Q8IU57 520 aaPredicted RBP3.78□□□□□ -1.81
PRPF39-206ENST00000554429 QTRT2Q9H974 415 aaKnown RBP3.78□□□□□ -1.81
PRPF39-206ENST00000554429 WNK3Q9BYP7 1800 aa3.78□□□□□ -1.81
PRPF39-206ENST00000554429 TNS3Q68CZ2 1445 aa3.77□□□□□ -1.81
PRPF39-206ENST00000554429 CLSTN1O94985 981 aa3.77□□□□□ -1.81
PRPF39-206ENST00000554429 PTCD2Q8WV60 388 aaKnown RBP3.77□□□□□ -1.81
PRPF39-206ENST00000554429 USP54Q70EL1 1684 aa3.77□□□□□ -1.81
PRPF39-206ENST00000554429 RBM33Q96EV2 1170 aaKnown RBP3.77□□□□□ -1.81
PRPF39-206ENST00000554429 KCNK17Q96T54 332 aa3.77□□□□□ -1.81
PRPF39-206ENST00000554429 ARHGEF28Q8N1W1 1705 aaKnown RBP3.77□□□□□ -1.81
PRPF39-206ENST00000554429 SPATA31A3Q5VYP0 1347 aa3.77□□□□□ -1.81
PRPF39-206ENST00000554429 NUP188Q5SRE5 1749 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 PARP4Q9UKK3 1724 aaKnown RBP3.76□□□□□ -1.81
PRPF39-206ENST00000554429 KDM4AO75164 1064 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 RBM10P98175 930 aaKnown RBP3.76□□□□□ -1.81
PRPF39-206ENST00000554429 FAM50AQ14320 339 aaKnown RBP3.76□□□□□ -1.81
PRPF39-206ENST00000554429 CNPY4Q8N129 248 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 TULP4Q9NRJ4 1543 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 YTHDC2Q9H6S0 1430 aaKnown RBP3.76□□□□□ -1.81
PRPF39-206ENST00000554429 LMO7Q8WWI1 1683 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 COL24A1Q17RW2 1714 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 ARHGEF10O15013 1369 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 EIF3AQ14152 1382 aaKnown RBP3.76□□□□□ -1.81
PRPF39-206ENST00000554429 PEAK1Q9H792 1746 aa3.76□□□□□ -1.81
PRPF39-206ENST00000554429 ATP7BP35670 1465 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms