RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 SART3Q15020 963 aaKnown RBP18.79■□□□□ 0.6
COL17A1-202ENST00000369733 CCDC141Q6ZP82 1450 aa18.79■□□□□ 0.6
COL17A1-202ENST00000369733 NOL10Q9BSC4 688 aaKnown RBP18.79■□□□□ 0.6
COL17A1-202ENST00000369733 GDPD2Q9HCC8 539 aa18.78■□□□□ 0.6
COL17A1-202ENST00000369733 ZHX1Q9UKY1 873 aaPredicted RBP18.78■□□□□ 0.6
COL17A1-202ENST00000369733 RRS1Q15050 365 aaKnown RBP18.78■□□□□ 0.6
COL17A1-202ENST00000369733 G3V3G9 751 aa18.78■□□□□ 0.6
COL17A1-202ENST00000369733 DCAF8Q5TAQ9 597 aa18.78■□□□□ 0.6
COL17A1-202ENST00000369733 TMCO3Q6UWJ1 677 aa18.78■□□□□ 0.6
COL17A1-202ENST00000369733 PCDHB15Q9Y5E8 787 aa18.78■□□□□ 0.6
COL17A1-202ENST00000369733 TNNT1P13805 278 aa18.77■□□□□ 0.6
COL17A1-202ENST00000369733 PIP4K2AP48426 406 aaPredicted RBP18.77■□□□□ 0.6
COL17A1-202ENST00000369733 TSPYL1Q9H0U9 437 aa18.77■□□□□ 0.6
COL17A1-202ENST00000369733 SMTNL1A8MU46 457 aa18.77■□□□□ 0.6
COL17A1-202ENST00000369733 KRT32Q14532 448 aa18.77■□□□□ 0.6
COL17A1-202ENST00000369733 KIF18AQ8NI77 898 aa18.77■□□□□ 0.6
COL17A1-202ENST00000369733 CLIP2Q9UDT6 1046 aa18.77■□□□□ 0.6
COL17A1-202ENST00000369733 LRSAM1Q6UWE0 723 aa18.77■□□□□ 0.59
COL17A1-202ENST00000369733 MAGEC2Q9UBF1 373 aaPredicted RBP18.77■□□□□ 0.59
COL17A1-202ENST00000369733 HDAC1Q13547 482 aaPredicted RBP18.76■□□□□ 0.59
COL17A1-202ENST00000369733 DCTN1Q14203 1278 aa18.76■□□□□ 0.59
COL17A1-202ENST00000369733 PRIMPOLQ96LW4 560 aa18.76■□□□□ 0.59
COL17A1-202ENST00000369733 PRPF40BQ6NWY9 871 aaKnown RBP18.76■□□□□ 0.59
COL17A1-202ENST00000369733 DDX11Q96FC9 970 aa18.76■□□□□ 0.59
COL17A1-202ENST00000369733 C16orf45Q96MC5 204 aaPredicted RBP18.76■□□□□ 0.59
COL17A1-202ENST00000369733 SCAND2PQ9GZW5 306 aaPredicted RBP18.76■□□□□ 0.59
COL17A1-202ENST00000369733 TBC1D2BQ9UPU7 963 aa18.76■□□□□ 0.59
COL17A1-202ENST00000369733 OFD1O75665 1012 aa18.76■□□□□ 0.59
COL17A1-202ENST00000369733 ZNF692Q9BU19 519 aaPredicted RBP18.76■□□□□ 0.59
COL17A1-202ENST00000369733 PLEKHO1Q53GL0 409 aaPredicted RBP18.75■□□□□ 0.59
COL17A1-202ENST00000369733 HMGXB3Q12766 1538 aa18.75■□□□□ 0.59
COL17A1-202ENST00000369733 RPGRIP1LQ68CZ1 1315 aa18.75■□□□□ 0.59
COL17A1-202ENST00000369733 NUCB1Q02818 461 aa18.75■□□□□ 0.59
COL17A1-202ENST00000369733 UVSSAQ2YD98 709 aa18.75■□□□□ 0.59
COL17A1-202ENST00000369733 SFPQP23246 707 aaKnown RBP eCLIP18.75■□□□□ 0.59
COL17A1-202ENST00000369733 SH2B1Q9NRF2 756 aaPredicted RBP18.74■□□□□ 0.59
COL17A1-202ENST00000369733 TXNDC2Q86VQ3 553 aa18.74■□□□□ 0.59
COL17A1-202ENST00000369733 NESP48681 1621 aa18.74■□□□□ 0.59
COL17A1-202ENST00000369733 FYB1O15117 783 aa18.74■□□□□ 0.59
COL17A1-202ENST00000369733 MAPK8IP2Q13387 824 aaPredicted RBP18.74■□□□□ 0.59
COL17A1-202ENST00000369733 DNMBPQ6XZF7 1577 aa18.74■□□□□ 0.59
COL17A1-202ENST00000369733 RTEL1-TNFRSF6BF6WH68 1400 aa18.74■□□□□ 0.59
COL17A1-202ENST00000369733 EVA1CP58658 441 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 LIMCH1Q9UPQ0 1083 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 SPDYE4A6NLX3 237 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 RAD21O60216 631 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 ZNHIT6Q9NWK9 470 aaKnown RBP18.73■□□□□ 0.59
COL17A1-202ENST00000369733 PTPRKQ15262 1439 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 EPS15P42566 896 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 CKAP2LQ8IYA6 745 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 ABTB2Q8N961 1025 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 KIF1BPQ96EK5 621 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 TTC39AQ5SRH9 613 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 SNX21Q969T3 373 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 ANO10Q9NW15 660 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 NLRP2Q9NX02 1062 aa18.73■□□□□ 0.59
COL17A1-202ENST00000369733 RAB11FIP3O75154 756 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 CFAP100Q494V2 611 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 TTC22Q5TAA0 569 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 CCDC102AQ96A19 550 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 TXLNAP40222 546 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 RRP12Q5JTH9 1297 aaKnown RBP18.72■□□□□ 0.59
COL17A1-202ENST00000369733 CCDC158Q5M9N0 1113 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 MIS18AQ9NYP9 233 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 PARD3Q8TEW0 1356 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 GLRX3O76003 335 aaKnown RBP18.72■□□□□ 0.59
COL17A1-202ENST00000369733 KIAA0754O94854 1291 aa18.72■□□□□ 0.59
COL17A1-202ENST00000369733 ARHGEF11O15085 1522 aa18.71■□□□□ 0.59
COL17A1-202ENST00000369733 MCM10Q7L590 875 aa18.71■□□□□ 0.59
COL17A1-202ENST00000369733 ABCA10Q8WWZ4 1543 aa18.71■□□□□ 0.59
COL17A1-202ENST00000369733 STK11IPQ8N1F8 1099 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 CCDC191Q8NCU4 936 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 SCAF11Q99590 1463 aaKnown RBP18.7■□□□□ 0.58
COL17A1-202ENST00000369733 STX6O43752 255 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 DDX54Q8TDD1 881 aaKnown RBP18.7■□□□□ 0.58
COL17A1-202ENST00000369733 RALGAPBQ86X10 1494 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 IQGAP2Q13576 1575 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 TRIM22Q8IYM9 498 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 TRMT1Q9NXH9 659 aaKnown RBP18.7■□□□□ 0.58
COL17A1-202ENST00000369733 CALCOCO1Q9P1Z2 691 aa18.7■□□□□ 0.58
COL17A1-202ENST00000369733 CUL7Q14999 1698 aa18.69■□□□□ 0.58
COL17A1-202ENST00000369733 ZKSCAN5Q9Y2L8 839 aa18.69■□□□□ 0.58
COL17A1-202ENST00000369733 SEC24BO95487 1268 aa18.69■□□□□ 0.58
COL17A1-202ENST00000369733 ZNF830Q96NB3 372 aaPredicted RBP18.69■□□□□ 0.58
COL17A1-202ENST00000369733 LARP6Q9BRS8 491 aaKnown RBP18.69■□□□□ 0.58
COL17A1-202ENST00000369733 NEMFO60524 1076 aa18.69■□□□□ 0.58
COL17A1-202ENST00000369733 UBE2HP62256 183 aa18.69■□□□□ 0.58
COL17A1-202ENST00000369733 ZSCAN12O43309 604 aa18.68■□□□□ 0.58
COL17A1-202ENST00000369733 URI1O94763 535 aaPredicted RBP18.68■□□□□ 0.58
COL17A1-202ENST00000369733 HCLS1P14317 486 aaPredicted RBP18.68■□□□□ 0.58
COL17A1-202ENST00000369733 FAM193AP78312 1265 aa18.68■□□□□ 0.58
COL17A1-202ENST00000369733 DDX19AQ9NUU7 478 aaKnown RBP18.68■□□□□ 0.58
COL17A1-202ENST00000369733 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.68■□□□□ 0.58
COL17A1-202ENST00000369733 RAB3GAP1Q15042 981 aa18.68■□□□□ 0.58
COL17A1-202ENST00000369733 MYO6Q9UM54 1294 aa18.68■□□□□ 0.58
COL17A1-202ENST00000369733 NOLC1Q14978 699 aaKnown RBP eCLIP18.68■□□□□ 0.58
COL17A1-202ENST00000369733 CCDC181Q5TID7 509 aa18.68■□□□□ 0.58
COL17A1-202ENST00000369733 RRAGDQ9NQL2 400 aaPredicted RBP18.68■□□□□ 0.58
COL17A1-202ENST00000369733 CDKL5O76039 1030 aa18.67■□□□□ 0.58
COL17A1-202ENST00000369733 GJB2P29033 226 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms