RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 USHBP1Q8N6Y0 703 aa21.57■■□□□ 1.04
SCAMP4-201ENST00000316097 STRCP1A6NGW2 1772 aa21.57■■□□□ 1.04
SCAMP4-201ENST00000316097 MCM10Q7L590 875 aa21.56■■□□□ 1.04
SCAMP4-201ENST00000316097 MFAP1P55081 439 aaKnown RBP21.55■■□□□ 1.04
SCAMP4-201ENST00000316097 CHMP5Q9NZZ3 219 aa21.55■■□□□ 1.04
SCAMP4-201ENST00000316097 C1orf167Q5SNV9 1468 aa21.55■■□□□ 1.04
SCAMP4-201ENST00000316097 TRAK2O60296 914 aa21.55■■□□□ 1.04
SCAMP4-201ENST00000316097 C22orf23Q9BZE7 217 aa21.55■■□□□ 1.04
SCAMP4-201ENST00000316097 LMTK3Q96Q04 1460 aa21.54■■□□□ 1.04
SCAMP4-201ENST00000316097 IL16Q14005 1332 aa21.54■■□□□ 1.04
SCAMP4-201ENST00000316097 CLCN1P35523 988 aa21.53■■□□□ 1.04
SCAMP4-201ENST00000316097 SSH1Q8WYL5 1049 aa21.53■■□□□ 1.04
SCAMP4-201ENST00000316097 MARF1Q9Y4F3 1742 aaKnown RBP21.53■■□□□ 1.04
SCAMP4-201ENST00000316097 TSPYL6Q8N831 410 aa21.53■■□□□ 1.04
SCAMP4-201ENST00000316097 MTHFSDQ2M296 383 aaKnown RBP21.52■■□□□ 1.04
SCAMP4-201ENST00000316097 MBIPQ9NS73 344 aa21.52■■□□□ 1.04
SCAMP4-201ENST00000316097 ZNF335Q9H4Z2 1342 aaPredicted RBP21.52■■□□□ 1.04
SCAMP4-201ENST00000316097 SMC4Q9NTJ3 1288 aa21.52■■□□□ 1.04
SCAMP4-201ENST00000316097 GCP02774 474 aa21.52■■□□□ 1.03
SCAMP4-201ENST00000316097 MVPQ14764 893 aaKnown RBP21.51■■□□□ 1.03
SCAMP4-201ENST00000316097 MIS18AQ9NYP9 233 aa21.5■■□□□ 1.03
SCAMP4-201ENST00000316097 IGSF1Q8N6C5 1336 aa21.49■■□□□ 1.03
SCAMP4-201ENST00000316097 MRE11P49959 708 aa21.49■■□□□ 1.03
SCAMP4-201ENST00000316097 FTSJ3Q8IY81 847 aaKnown RBP21.48■■□□□ 1.03
SCAMP4-201ENST00000316097 LRRC59Q96AG4 307 aaKnown RBP21.48■■□□□ 1.03
SCAMP4-201ENST00000316097 MST1RQ04912 1400 aa21.48■■□□□ 1.03
SCAMP4-201ENST00000316097 KRT24Q2M2I5 525 aa21.48■■□□□ 1.03
SCAMP4-201ENST00000316097 CABLES1Q8TDN4 633 aa21.48■■□□□ 1.03
SCAMP4-201ENST00000316097 ZNF853P0CG23 659 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 ZC3H6P61129 1189 aaKnown RBP21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 GNAI1P63096 354 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 NBPF6Q5VWK0 638 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 HSCBQ8IWL3 235 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 C8orf58Q8NAV2 365 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 IP6K1Q92551 441 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 NBPF4Q96M43 638 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 ARHGEF10O15013 1369 aa21.47■■□□□ 1.03
SCAMP4-201ENST00000316097 CFAP44Q96MT7 982 aa21.46■■□□□ 1.03
SCAMP4-201ENST00000316097 IFT57Q9NWB7 429 aa21.46■■□□□ 1.03
SCAMP4-201ENST00000316097 NOB1Q9ULX3 412 aaKnown RBP21.46■■□□□ 1.03
SCAMP4-201ENST00000316097 DLG5Q8TDM6 1919 aa21.46■■□□□ 1.03
SCAMP4-201ENST00000316097 LMOD3Q0VAK6 560 aa21.46■■□□□ 1.03
SCAMP4-201ENST00000316097 ZKSCAN2Q63HK3 967 aa21.46■■□□□ 1.03
SCAMP4-201ENST00000316097 RGPD1P0DJD0 1748 aa21.45■■□□□ 1.03
SCAMP4-201ENST00000316097 CADPS2Q86UW7 1296 aa21.45■■□□□ 1.02
SCAMP4-201ENST00000316097 DZIP1LQ8IYY4 767 aaKnown RBP21.45■■□□□ 1.02
SCAMP4-201ENST00000316097 KCNH5Q8NCM2 988 aa21.45■■□□□ 1.02
SCAMP4-201ENST00000316097 GRPEL1Q9HAV7 217 aa21.45■■□□□ 1.02
SCAMP4-201ENST00000316097 AXIN2Q9Y2T1 843 aa21.45■■□□□ 1.02
SCAMP4-201ENST00000316097 STRCQ7RTU9 1775 aa21.44■■□□□ 1.02
SCAMP4-201ENST00000316097 DDX11L8A8MPP1 907 aa21.44■■□□□ 1.02
SCAMP4-201ENST00000316097 VAMP4O75379 141 aa21.44■■□□□ 1.02
SCAMP4-201ENST00000316097 CALD1Q05682 793 aaKnown RBP21.43■■□□□ 1.02
SCAMP4-201ENST00000316097 KDRP35968 1356 aa21.43■■□□□ 1.02
SCAMP4-201ENST00000316097 MSH6P52701 1360 aa21.43■■□□□ 1.02
SCAMP4-201ENST00000316097 TRIM27P14373 513 aa21.42■■□□□ 1.02
SCAMP4-201ENST00000316097 GLIPR1L2Q4G1C9 344 aa21.42■■□□□ 1.02
SCAMP4-201ENST00000316097 ARHGEF25Q86VW2 580 aa21.42■■□□□ 1.02
SCAMP4-201ENST00000316097 NFAT5O94916 1531 aa21.42■■□□□ 1.02
SCAMP4-201ENST00000316097 HSP90AA1P07900 732 aaKnown RBP21.42■■□□□ 1.02
SCAMP4-201ENST00000316097 CT47B1P0C2W7 299 aaPredicted RBP21.42■■□□□ 1.02
SCAMP4-201ENST00000316097 TWISTNBQ3B726 338 aaPredicted RBP21.41■■□□□ 1.02
SCAMP4-201ENST00000316097 RTF1Q92541 710 aaKnown RBP21.4■■□□□ 1.02
SCAMP4-201ENST00000316097 LTN1O94822 1766 aa21.39■■□□□ 1.02
SCAMP4-201ENST00000316097 HSP90AA2PQ14568 343 aaPredicted RBP21.39■■□□□ 1.01
SCAMP4-201ENST00000316097 ESPNB1AK53 854 aa21.39■■□□□ 1.01
SCAMP4-201ENST00000316097 ITPRIPQ8IWB1 547 aa21.39■■□□□ 1.01
SCAMP4-201ENST00000316097 KIF24Q5T7B8 1368 aa21.38■■□□□ 1.01
SCAMP4-201ENST00000316097 ERBB4Q15303 1308 aa21.38■■□□□ 1.01
SCAMP4-201ENST00000316097 HDAC1Q13547 482 aaPredicted RBP21.38■■□□□ 1.01
SCAMP4-201ENST00000316097 BRINP3Q76B58 766 aa21.38■■□□□ 1.01
SCAMP4-201ENST00000316097 CHL1O00533 1208 aa21.37■■□□□ 1.01
SCAMP4-201ENST00000316097 ATF7IPQ6VMQ6 1270 aa21.37■■□□□ 1.01
SCAMP4-201ENST00000316097 ANKRD24Q8TF21 1146 aa21.37■■□□□ 1.01
SCAMP4-201ENST00000316097 USP54Q70EL1 1684 aa21.37■■□□□ 1.01
SCAMP4-201ENST00000316097 CHRNA2Q15822 529 aa21.36■■□□□ 1.01
SCAMP4-201ENST00000316097 GAS2L2Q8NHY3 880 aa21.36■■□□□ 1.01
SCAMP4-201ENST00000316097 ISY1Q9ULR0 285 aaKnown RBP21.36■■□□□ 1.01
SCAMP4-201ENST00000316097 RTL1A6NKG5 1358 aa21.36■■□□□ 1.01
SCAMP4-201ENST00000316097 TNPO1Q92973 898 aaKnown RBP21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 SLAIN2Q9P270 581 aa21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 DDX19BQ9UMR2 479 aa21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 NCOA3Q9Y6Q9 1424 aa21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 TRPM3Q9HCF6 1732 aaPredicted RBP21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 NPHP3Q7Z494 1330 aa21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 DDIT3P35638 169 aa21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 IL17REQ8NFR9 667 aa21.35■■□□□ 1.01
SCAMP4-201ENST00000316097 TMEM57Q8N5G2 664 aa21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 TRIM44Q96DX7 344 aaPredicted RBP21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 DCCP43146 1447 aa21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 CRB1P82279 1406 aa21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 GNAT3A8MTJ3 354 aa21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 RRP9O43818 475 aaKnown RBP21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 MRPL50Q8N5N7 158 aaKnown RBP21.34■■□□□ 1.01
SCAMP4-201ENST00000316097 ALDH1L2Q3SY69 923 aa21.33■■□□□ 1.01
SCAMP4-201ENST00000316097 SMC5Q8IY18 1101 aa21.33■■□□□ 1.01
SCAMP4-201ENST00000316097 GAS2L3Q86XJ1 694 aa21.33■■□□□ 1.01
SCAMP4-201ENST00000316097 XIRP1Q702N8 1843 aaKnown RBP21.32■■□□□ 1
SCAMP4-201ENST00000316097 HSP90AB1P08238 724 aaKnown RBP21.32■■□□□ 1
SCAMP4-201ENST00000316097 VSIG10Q8N0Z9 540 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms