RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Ggnbp2Q5SV77 696 aa29.44■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Prim1P20664 417 aa29.43■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Slx1bQ8BX32 270 aa29.43■■■□□ 2.3
Upf3a-201ENSMUST00000043767 FocadA2AKG8 1798 aa29.43■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Arhgef1Q61210 920 aaKnown RBP29.42■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Nup153E9Q3G8 1462 aaKnown RBP29.41■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Usp16Q99LG0 825 aa29.41■■■□□ 2.3
Upf3a-201ENSMUST00000043767 NudcO35685 332 aaKnown RBP29.41■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Pak3Q61036 559 aa29.41■■■□□ 2.3
Upf3a-201ENSMUST00000043767 ThemisQ8BGW0 636 aa29.39■■■□□ 2.3
Upf3a-201ENSMUST00000043767 Pard3Q99NH2 1333 aa29.39■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Egfem1Q8C088 590 aa29.38■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Ccdc60Q8C4J0 545 aa29.37■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Lrrc59Q922Q8 307 aaKnown RBP29.36■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Fam50bQ9WTJ8 334 aa29.36■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Aox2Q5SGK3 1345 aa29.36■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Sos1Q62245 1319 aa29.35■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Gm6268A2A3U9 297 aa29.35■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Pibf1E9Q6K3 756 aa29.35■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Vamp4O70480 141 aa29.34■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Kcnh8P59111 1102 aa29.34■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Plekhd1B2RPU2 505 aa29.33■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Rangap1P46061 589 aaKnown RBP29.33■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Nkx2-3P97334 362 aa29.33■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Slc5a4bQ91ZP4 660 aa29.33■■■□□ 2.29
Upf3a-201ENSMUST00000043767 1700019A02RikA0A087WPV9 146 aa29.33■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Zpr1Q62384 459 aa29.33■■■□□ 2.29
Upf3a-201ENSMUST00000043767 Cc2d1aQ8K1A6 943 aa29.3■■■□□ 2.28
Upf3a-201ENSMUST00000043767 Ccdc171E9Q1U1 1324 aa29.29■■■□□ 2.28
Upf3a-201ENSMUST00000043767 Pank1Q8K4K6 548 aa29.28■■■□□ 2.28
Upf3a-201ENSMUST00000043767 Pdzd9Q9D9M4 266 aa29.27■■■□□ 2.28
Upf3a-201ENSMUST00000043767 G3bp1P97855 465 aaKnown RBP29.26■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Ggt6Q6PDE7 497 aa29.25■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Tns2Q8CGB6 1400 aa29.25■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Tnks1bp1P58871 1720 aa29.25■■■□□ 2.27
Upf3a-201ENSMUST00000043767 4930572O03RikQ8C5Y0 211 aa29.24■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Abcc12Q80WJ6 1366 aa29.24■■■□□ 2.27
Upf3a-201ENSMUST00000043767 KarsQ99MN1 595 aaKnown RBP29.24■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Phkg2Q9DB30 406 aa29.24■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Adgrb1Q3UHD1 1582 aa29.23■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Nectin2P32507 530 aa29.23■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Plekhm2Q80TQ5 1018 aa29.23■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Foxp4Q9DBY0 795 aaKnown RBP29.23■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Ipo9Q91YE6 1041 aa29.22■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Trim58Q5NCC9 485 aa29.21■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Tmco5bQ80X59 307 aa29.21■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Speer4bQ9D9F7 267 aa29.21■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Ppp1r3fQ9JIG4 799 aa29.21■■■□□ 2.27
Upf3a-201ENSMUST00000043767 Larp1Q6ZQ58 1072 aaKnown RBP29.2■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Nsd3Q6P2L6 1439 aa29.19■■■□□ 2.26
Upf3a-201ENSMUST00000043767 NeflP08551 543 aa29.19■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Ccdc155Q80VJ8 648 aa29.18■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Cyp2d12Q8BVD2 504 aa29.18■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Myo5bP21271 1818 aa29.18■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Chmp7Q8R1T1 451 aa29.17■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Tspyl2Q7TQI8 677 aa29.17■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Irx6Q9ER75 438 aa29.17■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Zeb2Q9R0G7 1215 aa29.17■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Psrc1Q9D0P7 329 aa29.16■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Igsf1Q7TQA1 1317 aa29.16■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Gm21680A0A0G2JGR8 267 aa29.16■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Btbd11Q6GQW0 1109 aa29.16■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Asic4Q7TNS7 539 aa29.16■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Znf330Q922H9 316 aa29.15■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Akap11E9Q777 1895 aa29.14■■■□□ 2.26
Upf3a-201ENSMUST00000043767 Slc4a3P16283 1227 aa29.14■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Msh6P54276 1358 aaKnown RBP29.13■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Ccdc27Q3V036 639 aa29.13■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Tnnt1O88346 262 aa29.13■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Q3TQI7 289 aaKnown RBP29.13■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Chpf2Q3UU43 768 aa29.12■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Eif3bQ8JZQ9 803 aaKnown RBP29.12■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Prkrip1Q9CWV6 186 aaKnown RBP29.11■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Mbd3Q9Z2D8 285 aaKnown RBP29.11■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Chl1P70232 1209 aa29.11■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Ccdc129Q14B48 1034 aa29.11■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Eif4a1P60843 406 aaKnown RBP29.1■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Aplp1Q03157 653 aa29.1■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Q3UPC7 1272 aa29.1■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Nyap1Q6PFX7 833 aa29.1■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Eno4Q8C042 619 aa29.1■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Sema6bO54951 886 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Gm21663A0A0G2JE01 267 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Gm7361D3Z6R1 267 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 5031410I06RikE9Q4E0 267 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Gm1979E9QAN3 267 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Gm5862K7N5V5 267 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Gm10220K7N660 267 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Nutm1Q8BHP2 1126 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Ssfa2Q922B9 1252 aa29.09■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Atf5O70191 283 aa29.08■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Cavin2Q63918 418 aaKnown RBP29.08■■■□□ 2.25
Upf3a-201ENSMUST00000043767 Znf521Q6KAS7 1311 aa29.07■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Slc5a1Q8C3K6 665 aa29.07■■■□□ 2.24
Upf3a-201ENSMUST00000043767 MarsQ68FL6 902 aaKnown RBP29.06■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Maco1Q7TQE6 664 aaKnown RBP29.05■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Col1a2Q01149 1372 aa29.05■■■□□ 2.24
Upf3a-201ENSMUST00000043767 MypopQ8R4U1 393 aa29.05■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Aifm3Q3TY86 605 aa29.04■■■□□ 2.24
Upf3a-201ENSMUST00000043767 Aldh1l1Q8R0Y6 902 aa29.04■■■□□ 2.24
Retrieved 100 of 22,080 RNA–protein pairs in 9.9 ms