RNA–Protein interactions for RNA: YNR004W

SWM2, Transcript of Protein with a role in snRNA and snoRNA cap trimethylation, yeast

Gene SWM2, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWM2	YNR004W	PEX7	P39108	375 aa		5.07	□□□□□ -1.6
SWM2	YNR004W	RIM8	P53179	542 aa		5.07	□□□□□ -1.6
SWM2	YNR004W	PTC7	P38797	343 aa		5.06	□□□□□ -1.6
SWM2	YNR004W	GSF2	Q04697	403 aa	Known RBP	5.06	□□□□□ -1.6
SWM2	YNR004W	ALG6	Q12001	544 aa	Known RBP	5.06	□□□□□ -1.6
SWM2	YNR004W	HTS1	P07263	546 aa	Known RBP	5.05	□□□□□ -1.6
SWM2	YNR004W	MEC3	Q02574	474 aa		5.05	□□□□□ -1.6
SWM2	YNR004W	YDL177C	Q12257	170 aa		5.05	□□□□□ -1.6
SWM2	YNR004W	REI1	P38344	393 aa	Predicted RBP	5.04	□□□□□ -1.6
SWM2	YNR004W	NPR1	P22211	790 aa		5.03	□□□□□ -1.6
SWM2	YNR004W	NFS1	P25374	497 aa		5.03	□□□□□ -1.6
SWM2	YNR004W	TOD6	P34219	525 aa		5.03	□□□□□ -1.6
SWM2	YNR004W	GTS1	P40956	396 aa		5.03	□□□□□ -1.6
SWM2	YNR004W	CTR9	P89105	1077 aa		5.03	□□□□□ -1.6
SWM2	YNR004W	LSO1	Q3E827	93 aa		5.03	□□□□□ -1.6
SWM2	YNR004W	SMY2	P32909	740 aa	Known RBP	5.02	□□□□□ -1.61
SWM2	YNR004W	ECM2	P38241	364 aa	Known RBP	5.02	□□□□□ -1.61
SWM2	YNR004W	ETP1	P38748	585 aa	Known RBP	5.02	□□□□□ -1.61
SWM2	YNR004W	YML083C	Q04526	418 aa		5.02	□□□□□ -1.61
SWM2	YNR004W	CMR1	Q12510	522 aa	Known RBP	5.02	□□□□□ -1.61
SWM2	YNR004W	SOD2	P00447	233 aa		5.01	□□□□□ -1.61
SWM2	YNR004W	RIM11	P38615	370 aa		5.01	□□□□□ -1.61
SWM2	YNR004W	UTP22	P53254	1237 aa	Predicted RBP	5.01	□□□□□ -1.61
SWM2	YNR004W	COB	P00163	385 aa		5	□□□□□ -1.61
SWM2	YNR004W	FUR4	P05316	633 aa	Known RBP	5	□□□□□ -1.61
SWM2	YNR004W	ELA1	P53861	379 aa	Predicted RBP	5	□□□□□ -1.61
SWM2	YNR004W	NNK1	P36003	928 aa		4.99	□□□□□ -1.61
SWM2	YNR004W	ABZ1	P37254	787 aa	Predicted RBP	4.99	□□□□□ -1.61
SWM2	YNR004W	RPS13	P05756	151 aa	Known RBP	4.98	□□□□□ -1.61
SWM2	YNR004W	LEO1	P38439	464 aa		4.98	□□□□□ -1.61
SWM2	YNR004W	AVO1	Q08236	1176 aa		4.98	□□□□□ -1.61
SWM2	YNR004W	YPL277C	Q08989	487 aa		4.98	□□□□□ -1.61
SWM2	YNR004W	TAD3	Q9URQ3	322 aa		4.98	□□□□□ -1.61
SWM2	YNR004W	YGR045C	P53229	120 aa		4.97	□□□□□ -1.61
SWM2	YNR004W	TUB2	P02557	457 aa	Known RBP	4.96	□□□□□ -1.62
SWM2	YNR004W	PRP5	P21372	849 aa	Predicted RBP	4.96	□□□□□ -1.62
SWM2	YNR004W	FOL2	P51601	243 aa	Known RBP	4.96	□□□□□ -1.62
SWM2	YNR004W	SNO2	P53823	222 aa		4.96	□□□□□ -1.62
SWM2	YNR004W	CLU1	Q03690	1277 aa	Known RBP	4.96	□□□□□ -1.62
SWM2	YNR004W	TPP1	Q03796	238 aa		4.95	□□□□□ -1.62
SWM2	YNR004W	PUS7	Q08647	676 aa	Known RBP	4.95	□□□□□ -1.62
SWM2	YNR004W	SHM2	P37291	469 aa	Known RBP	4.94	□□□□□ -1.62
SWM2	YNR004W	BOL3	P39724	118 aa		4.94	□□□□□ -1.62
SWM2	YNR004W	PNS1	Q12412	539 aa		4.94	□□□□□ -1.62
SWM2	YNR004W	YLR358C	O13565	187 aa		4.93	□□□□□ -1.62
SWM2	YNR004W	CTS1	P29029	562 aa		4.93	□□□□□ -1.62
SWM2	YNR004W	DUR3	P33413	735 aa		4.93	□□□□□ -1.62
SWM2	YNR004W	NOB1	Q08444	459 aa	Known RBP	4.93	□□□□□ -1.62
SWM2	YNR004W	SSA4	P22202	642 aa	Known RBP	4.92	□□□□□ -1.62
SWM2	YNR004W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-DR6	P0CX70	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-ER1	P0CX71	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-LR2	P0CX72	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-PL	P0CX73	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-JR1	P0CX74	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-LR3	P0CX75	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-ML2	P0CX76	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	ARL1	P38116	183 aa	Known RBP	4.91	□□□□□ -1.62
SWM2	YNR004W	YHL012W	P38709	493 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	UFD2	P54860	961 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-GR1	Q12085	440 aa		4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.91	□□□□□ -1.62
SWM2	YNR004W	TY1A-OL	Q92392	440 aa	Known RBP	4.91	□□□□□ -1.62
SWM2	YNR004W	RSC4	Q02206	625 aa		4.9	□□□□□ -1.63
SWM2	YNR004W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
SWM2	YNR004W	PMT7	Q06644	662 aa		4.88	□□□□□ -1.63
SWM2	YNR004W	SAM35	P14693	329 aa		4.87	□□□□□ -1.63
SWM2	YNR004W	AIM26	P32858	118 aa		4.87	□□□□□ -1.63
SWM2	YNR004W	NMD3	P38861	518 aa	Known RBP	4.87	□□□□□ -1.63
SWM2	YNR004W	SAP155	P43612	1002 aa		4.87	□□□□□ -1.63
SWM2	YNR004W	YAF9	P53930	226 aa		4.87	□□□□□ -1.63
SWM2	YNR004W	MDL2	P33311	773 aa		4.86	□□□□□ -1.63
SWM2	YNR004W	GLO3	P38682	493 aa	Known RBP	4.86	□□□□□ -1.63
SWM2	YNR004W	YOR352W	Q08816	343 aa		4.86	□□□□□ -1.63
SWM2	YNR004W	MCM5	P29496	775 aa	Known RBP	4.85	□□□□□ -1.63
SWM2	YNR004W	YPT53	P36019	220 aa		4.85	□□□□□ -1.63
SWM2	YNR004W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
SWM2	YNR004W	BSC2	Q05611	235 aa		4.85	□□□□□ -1.63
SWM2	YNR004W	YLR257W	Q06146	321 aa	Known RBP	4.85	□□□□□ -1.63
SWM2	YNR004W	YKL077W	P36081	392 aa		4.84	□□□□□ -1.63
SWM2	YNR004W	TAT2	P38967	592 aa		4.84	□□□□□ -1.63
SWM2	YNR004W	YAR028W	P39548	234 aa		4.84	□□□□□ -1.63
SWM2	YNR004W	NUT1	P53114	1132 aa		4.84	□□□□□ -1.63
SWM2	YNR004W	FLP1	P03870	423 aa		4.83	□□□□□ -1.64
SWM2	YNR004W	RET1	P22276	1149 aa	Known RBP	4.83	□□□□□ -1.64
SWM2	YNR004W	SLS1	P42900	643 aa		4.83	□□□□□ -1.64
SWM2	YNR004W	SPT20	P50875	604 aa		4.83	□□□□□ -1.64
SWM2	YNR004W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
SWM2	YNR004W	HRK1	Q08732	759 aa	Known RBP	4.83	□□□□□ -1.64
SWM2	YNR004W	QDR1	P40475	563 aa		4.82	□□□□□ -1.64
SWM2	YNR004W	YDR132C	Q03900	495 aa		4.82	□□□□□ -1.64
SWM2	YNR004W	EXO5	P38289	585 aa		4.81	□□□□□ -1.64
SWM2	YNR004W	HSE1	P38753	452 aa		4.81	□□□□□ -1.64
SWM2	YNR004W	YNL011C	P53980	444 aa		4.81	□□□□□ -1.64
SWM2	YNR004W	SRO9	P25567	434 aa	Known RBP	4.8	□□□□□ -1.64
SWM2	YNR004W	NEM1	P38757	446 aa		4.8	□□□□□ -1.64
SWM2	YNR004W	SHU2	P38957	223 aa		4.8	□□□□□ -1.64
SWM2	YNR004W	DMA2	P53924	522 aa		4.8	□□□□□ -1.64
SWM2	YNR004W	RSA3	Q05942	220 aa	Known RBP	4.8	□□□□□ -1.64
SWM2	YNR004W	SPS1	P08458	490 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 102.8 ms