RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W RCM1P53972 490 aa6.35□□□□□ -1.39
UBP8YMR223W CDC3P32457 520 aaKnown RBP6.34□□□□□ -1.39
UBP8YMR223W WHI3P34761 661 aaKnown RBP6.34□□□□□ -1.39
UBP8YMR223W NUT1P53114 1132 aa6.34□□□□□ -1.39
UBP8YMR223W SEA4P38164 1038 aa6.33□□□□□ -1.4
UBP8YMR223W REI1P38344 393 aaPredicted RBP6.33□□□□□ -1.4
UBP8YMR223W NIT1P40447 199 aa6.33□□□□□ -1.4
UBP8YMR223W ALT1P52893 592 aa6.33□□□□□ -1.4
UBP8YMR223W YAF9P53930 226 aa6.33□□□□□ -1.4
UBP8YMR223W RPS4AP0CX35 261 aaKnown RBP6.32□□□□□ -1.4
UBP8YMR223W RPS4BP0CX36 261 aaKnown RBP6.32□□□□□ -1.4
UBP8YMR223W RVS167P39743 482 aaKnown RBP6.32□□□□□ -1.4
UBP8YMR223W UBP5P39944 805 aa6.32□□□□□ -1.4
UBP8YMR223W OYE3P41816 400 aaPredicted RBP6.32□□□□□ -1.4
UBP8YMR223W DFG16Q99234 619 aa6.32□□□□□ -1.4
UBP8YMR223W MSH4P40965 878 aaPredicted RBP6.31□□□□□ -1.4
UBP8YMR223W SEG2P34250 1132 aa6.3□□□□□ -1.4
UBP8YMR223W LRG1P35688 1017 aa6.3□□□□□ -1.4
UBP8YMR223W POL12P38121 705 aaPredicted RBP6.3□□□□□ -1.4
UBP8YMR223W SHU2P38957 223 aa6.29□□□□□ -1.4
UBP8YMR223W MDJ2P42834 146 aa6.29□□□□□ -1.4
UBP8YMR223W ORC3P54790 616 aa6.29□□□□□ -1.4
UBP8YMR223W INP54Q08227 384 aaKnown RBP6.29□□□□□ -1.4
UBP8YMR223W SMY2P32909 740 aaKnown RBP6.28□□□□□ -1.4
UBP8YMR223W NNK1P36003 928 aa6.28□□□□□ -1.4
UBP8YMR223W GRS1P38088 690 aaKnown RBP6.28□□□□□ -1.4
UBP8YMR223W ERP5P38819 212 aa6.28□□□□□ -1.4
UBP8YMR223W SAM37P50110 327 aa6.28□□□□□ -1.4
UBP8YMR223W ADP1P25371 1049 aa6.27□□□□□ -1.41
UBP8YMR223W MCM5P29496 775 aaKnown RBP6.27□□□□□ -1.41
UBP8YMR223W YKL077WP36081 392 aa6.27□□□□□ -1.41
UBP8YMR223W GEF1P37020 779 aa6.27□□□□□ -1.41
UBP8YMR223W YGR045CP53229 120 aa6.27□□□□□ -1.41
UBP8YMR223W NOC3Q07896 663 aaPredicted RBP6.27□□□□□ -1.41
UBP8YMR223W ALG6Q12001 544 aaKnown RBP6.27□□□□□ -1.41
UBP8YMR223W YBL113CQ7M4S9 792 aa6.27□□□□□ -1.41
UBP8YMR223W RNQ1P25367 405 aa6.26□□□□□ -1.41
UBP8YMR223W HSP78P33416 811 aa6.26□□□□□ -1.41
UBP8YMR223W PRP43P53131 767 aaKnown RBP6.26□□□□□ -1.41
UBP8YMR223W AVO1Q08236 1176 aa6.26□□□□□ -1.41
UBP8YMR223W TRE1Q08919 783 aa6.26□□□□□ -1.41
UBP8YMR223W NFS1P25374 497 aa6.25□□□□□ -1.41
UBP8YMR223W NUT2Q06213 157 aa6.25□□□□□ -1.41
UBP8YMR223W YVC1Q12324 675 aa6.25□□□□□ -1.41
UBP8YMR223W CIC1P38779 376 aaKnown RBP6.25□□□□□ -1.41
UBP8YMR223W YCS4Q06156 1176 aa6.25□□□□□ -1.41
UBP8YMR223W GPI13Q07830 1017 aa6.25□□□□□ -1.41
UBP8YMR223W FRT1Q99332 602 aa6.25□□□□□ -1.41
UBP8YMR223W TY1A-LR4P0C2I8 440 aaKnown RBP6.24□□□□□ -1.41
UBP8YMR223W TY1A-DR6P0CX70 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-ER1P0CX71 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-LR2P0CX72 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-PLP0CX73 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-JR1P0CX74 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-LR3P0CX75 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-ML2P0CX76 440 aa6.24□□□□□ -1.41
UBP8YMR223W EXO5P38289 585 aa6.24□□□□□ -1.41
UBP8YMR223W PEX7P39108 375 aa6.24□□□□□ -1.41
UBP8YMR223W ELA1P53861 379 aaPredicted RBP6.24□□□□□ -1.41
UBP8YMR223W NOG1Q02892 647 aaKnown RBP6.24□□□□□ -1.41
UBP8YMR223W TY1A-GR1Q12085 440 aa6.24□□□□□ -1.41
UBP8YMR223W TY1A-PR3Q6Q5H1 440 aaKnown RBP6.24□□□□□ -1.41
UBP8YMR223W TY1A-OLQ92392 440 aaKnown RBP6.24□□□□□ -1.41
UBP8YMR223W EAR1Q03212 550 aa6.23□□□□□ -1.41
UBP8YMR223W MON1P53129 644 aa6.22□□□□□ -1.41
UBP8YMR223W SSY1Q03770 852 aa6.22□□□□□ -1.41
UBP8YMR223W HAT1Q12341 374 aa6.22□□□□□ -1.41
UBP8YMR223W GAS1P22146 559 aaKnown RBP6.2□□□□□ -1.42
UBP8YMR223W MTR4P47047 1073 aaKnown RBP6.2□□□□□ -1.42
UBP8YMR223W PRO1P32264 428 aa6.19□□□□□ -1.42
UBP8YMR223W TSA1P34760 196 aaKnown RBP6.19□□□□□ -1.42
UBP8YMR223W SLS1P42900 643 aa6.19□□□□□ -1.42
UBP8YMR223W CDA2Q06703 312 aa6.19□□□□□ -1.42
UBP8YMR223W PUS7Q08647 676 aaKnown RBP6.19□□□□□ -1.42
UBP8YMR223W LPX1Q12405 387 aaKnown RBP6.19□□□□□ -1.42
UBP8YMR223W VPS35P34110 944 aa6.18□□□□□ -1.42
UBP8YMR223W NEM1P38757 446 aa6.18□□□□□ -1.42
UBP8YMR223W GCD6P32501 712 aaKnown RBP6.17□□□□□ -1.42
UBP8YMR223W HSE1P38753 452 aa6.17□□□□□ -1.42
UBP8YMR223W YAR028WP39548 234 aa6.17□□□□□ -1.42
UBP8YMR223W KAR2P16474 682 aaKnown RBP6.16□□□□□ -1.42
UBP8YMR223W VMA4P22203 233 aaKnown RBP6.16□□□□□ -1.42
UBP8YMR223W PTC7P38797 343 aa6.16□□□□□ -1.42
UBP8YMR223W TPP1Q03796 238 aa6.16□□□□□ -1.42
UBP8YMR223W UTP5Q04177 643 aaKnown RBP6.16□□□□□ -1.42
UBP8YMR223W LAP2Q10740 671 aa6.16□□□□□ -1.42
UBP8YMR223W RET1P22276 1149 aaKnown RBP6.15□□□□□ -1.43
UBP8YMR223W MSH3P25336 1018 aa6.15□□□□□ -1.43
UBP8YMR223W YCR015CP25616 317 aa6.15□□□□□ -1.43
UBP8YMR223W PRP40P33203 583 aaKnown RBP6.15□□□□□ -1.43
UBP8YMR223W HRK1Q08732 759 aaKnown RBP6.15□□□□□ -1.43
UBP8YMR223W YHL050CP38721 697 aa6.14□□□□□ -1.43
UBP8YMR223W YHR219WP38900 624 aa6.14□□□□□ -1.43
UBP8YMR223W YLR257WQ06146 321 aaKnown RBP6.14□□□□□ -1.43
UBP8YMR223W PHO4P07270 312 aaKnown RBP6.13□□□□□ -1.43
UBP8YMR223W PRP6P19735 899 aaPredicted RBP6.13□□□□□ -1.43
UBP8YMR223W MDL2P33311 773 aa6.13□□□□□ -1.43
UBP8YMR223W THI80P35202 319 aa6.12□□□□□ -1.43
UBP8YMR223W ATG14P38270 344 aa6.12□□□□□ -1.43
UBP8YMR223W GTS1P40956 396 aa6.12□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms