RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C LEM3P42838 414 aa5.66□□□□□ -1.5
NUP116YMR047C JIP4Q03361 876 aa5.65□□□□□ -1.5
NUP116YMR047C YPL260WQ08977 551 aa5.65□□□□□ -1.5
NUP116YMR047C MDL2P33311 773 aa5.65□□□□□ -1.51
NUP116YMR047C YBL028CP38202 106 aa5.65□□□□□ -1.51
NUP116YMR047C ALO1P54783 526 aaKnown RBP5.65□□□□□ -1.51
NUP116YMR047C PRY3P47033 881 aa5.64□□□□□ -1.51
NUP116YMR047C NSG2P53898 299 aa5.64□□□□□ -1.51
NUP116YMR047C SSF2Q12153 453 aaPredicted RBP5.64□□□□□ -1.51
NUP116YMR047C AI2P03876 854 aa5.64□□□□□ -1.51
NUP116YMR047C YDJ1P25491 409 aaKnown RBP5.64□□□□□ -1.51
NUP116YMR047C CTR9P89105 1077 aa5.64□□□□□ -1.51
NUP116YMR047C FKS1P38631 1876 aaKnown RBP5.64□□□□□ -1.51
NUP116YMR047C TAF13P11747 167 aa5.64□□□□□ -1.51
NUP116YMR047C RGT1P32862 1170 aa5.64□□□□□ -1.51
NUP116YMR047C SKI2P35207 1287 aaKnown RBP RIP-Chip data5.64□□□□□ -1.51not detected
NUP116YMR047C ALD6P54115 500 aaKnown RBP5.64□□□□□ -1.51
NUP116YMR047C KEL3Q08979 651 aaPredicted RBP5.64□□□□□ -1.51
NUP116YMR047C TUB2P02557 457 aaKnown RBP5.63□□□□□ -1.51
NUP116YMR047C KTR1P27810 393 aaKnown RBP5.63□□□□□ -1.51
NUP116YMR047C YIR042CP40586 236 aa5.63□□□□□ -1.51
NUP116YMR047C PIB1Q06651 286 aa5.63□□□□□ -1.51
NUP116YMR047C YDL124WQ07551 312 aaKnown RBP5.63□□□□□ -1.51
NUP116YMR047C MOT1P32333 1867 aa5.63□□□□□ -1.51
NUP116YMR047C CDC19P00549 500 aaKnown RBP5.63□□□□□ -1.51
NUP116YMR047C UBX5Q06682 500 aa5.63□□□□□ -1.51
NUP116YMR047C RIF1P29539 1916 aa5.63□□□□□ -1.51
NUP116YMR047C YML020WQ03722 664 aa5.63□□□□□ -1.51
NUP116YMR047C SEC8P32855 1065 aa5.62□□□□□ -1.51
NUP116YMR047C MYO3P36006 1272 aa5.62□□□□□ -1.51
NUP116YMR047C MCD4P36051 919 aa5.62□□□□□ -1.51
NUP116YMR047C DSF2P38213 736 aa5.62□□□□□ -1.51
NUP116YMR047C OPY1P38271 328 aa5.62□□□□□ -1.51
NUP116YMR047C YGR125WP53273 1036 aa5.62□□□□□ -1.51
NUP116YMR047C MET7Q08645 548 aa5.62□□□□□ -1.51
NUP116YMR047C MDM20Q12387 796 aaKnown RBP5.62□□□□□ -1.51
NUP116YMR047C HEM1P09950 548 aaPredicted RBP5.62□□□□□ -1.51
NUP116YMR047C MET1P36150 593 aa5.62□□□□□ -1.51
NUP116YMR047C SGD1Q06132 899 aa5.62□□□□□ -1.51
NUP116YMR047C CLB5P30283 435 aa5.61□□□□□ -1.51
NUP116YMR047C EUG1P32474 517 aa5.61□□□□□ -1.51
NUP116YMR047C SPT16P32558 1035 aaKnown RBP5.61□□□□□ -1.51
NUP116YMR047C RPT3P33298 428 aaKnown RBP5.61□□□□□ -1.51
NUP116YMR047C YHL050CP38721 697 aa5.61□□□□□ -1.51
NUP116YMR047C CRG1P38892 291 aaRIP-Chip data5.61□□□□□ -1.51not detected
NUP116YMR047C ILV3P39522 585 aaKnown RBP5.61□□□□□ -1.51
NUP116YMR047C CLA4P48562 842 aa5.61□□□□□ -1.51
NUP116YMR047C ULP1Q02724 621 aa5.61□□□□□ -1.51
NUP116YMR047C TPM1P17536 199 aaKnown RBP5.61□□□□□ -1.51
NUP116YMR047C PRE10P21242 288 aaKnown RBP RIP-Chip data5.6□□□□□ -1.51not detected
NUP116YMR047C PAH1P32567 862 aa5.6□□□□□ -1.51
NUP116YMR047C TGL1P34163 548 aa5.6□□□□□ -1.51
NUP116YMR047C RSC8P43609 557 aaKnown RBP5.6□□□□□ -1.51
NUP116YMR047C JSN1P47135 1091 aaKnown RBP RIP-Chip data5.6□□□□□ -1.51not detected
NUP116YMR047C RPS15Q01855 142 aaKnown RBP5.6□□□□□ -1.51
NUP116YMR047C LDB19Q12502 818 aa5.6□□□□□ -1.51
NUP116YMR047C TOM71P38825 639 aaKnown RBP5.6□□□□□ -1.51
NUP116YMR047C RIX1P38883 763 aaPredicted RBP5.6□□□□□ -1.51
NUP116YMR047C PSF2P40359 213 aa5.6□□□□□ -1.51
NUP116YMR047C PBY1P38254 753 aa5.59□□□□□ -1.51
NUP116YMR047C YML037CQ03703 340 aa5.59□□□□□ -1.51
NUP116YMR047C ISA1Q07821 250 aaPredicted RBP5.59□□□□□ -1.51
NUP116YMR047C YPL034WQ03083 165 aa5.59□□□□□ -1.51
NUP116YMR047C PUF6Q04373 656 aaKnown RBP5.59□□□□□ -1.51
NUP116YMR047C FIR1P40020 876 aa5.59□□□□□ -1.52
NUP116YMR047C MRPS35P53292 345 aa5.59□□□□□ -1.52
NUP116YMR047C VMA2P16140 517 aaKnown RBP5.58□□□□□ -1.52
NUP116YMR047C LDH1P38139 375 aa5.58□□□□□ -1.52
NUP116YMR047C YJL007CP47080 104 aa5.58□□□□□ -1.52
NUP116YMR047C SPH1Q06160 661 aa5.58□□□□□ -1.52
NUP116YMR047C SPN1Q06505 410 aaPredicted RBP5.58□□□□□ -1.52
NUP116YMR047C FBP1P09201 348 aa5.58□□□□□ -1.52
NUP116YMR047C COQ1P18900 473 aa5.58□□□□□ -1.52
NUP116YMR047C VPS29P38759 282 aa5.58□□□□□ -1.52
NUP116YMR047C ALG2P43636 503 aa5.58□□□□□ -1.52
NUP116YMR047C VPS62P53285 467 aa5.58□□□□□ -1.52
NUP116YMR047C MYO5Q04439 1219 aaKnown RBP5.58□□□□□ -1.52
NUP116YMR047C IXR1P33417 597 aa5.58□□□□□ -1.52
NUP116YMR047C ATG1P53104 897 aa5.58□□□□□ -1.52
NUP116YMR047C PRP3Q03338 469 aaPredicted RBP5.58□□□□□ -1.52
NUP116YMR047C RME1P32338 300 aaKnown RBP5.57□□□□□ -1.52
NUP116YMR047C POA1P38218 177 aa5.57□□□□□ -1.52
NUP116YMR047C ECM23Q02710 187 aa5.57□□□□□ -1.52
NUP116YMR047C DEP1P31385 405 aa5.57□□□□□ -1.52
NUP116YMR047C LTV1P34078 463 aa5.57□□□□□ -1.52
NUP116YMR047C SAP190P36123 1033 aa5.57□□□□□ -1.52
NUP116YMR047C BRN1P38170 754 aa5.57□□□□□ -1.52
NUP116YMR047C KSP1P38691 1029 aaKnown RBP5.57□□□□□ -1.52
NUP116YMR047C CEF1Q03654 590 aaPredicted RBP5.57□□□□□ -1.52
NUP116YMR047C SPO22P40511 975 aa5.56□□□□□ -1.52
NUP116YMR047C EAF7P53911 425 aaKnown RBP5.56□□□□□ -1.52
NUP116YMR047C SUT2Q12286 268 aa5.56□□□□□ -1.52
NUP116YMR047C NUC1P08466 329 aa5.56□□□□□ -1.52
NUP116YMR047C RAD18P10862 487 aa5.56□□□□□ -1.52
NUP116YMR047C VID27P40157 782 aa5.56□□□□□ -1.52
NUP116YMR047C DSN1P40568 576 aa5.56□□□□□ -1.52
NUP116YMR047C ASF1P32447 279 aa5.56□□□□□ -1.52
NUP116YMR047C FOL1P53848 824 aa5.56□□□□□ -1.52
NUP116YMR047C SNA3P14359 133 aa5.55□□□□□ -1.52
NUP116YMR047C DLD1P32891 587 aa5.55□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms