RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	ZDS1	P50111	915 aa	Known RBP	5.69	□□□□□ -1.5
UBI4	YLL039C	YNL108C	P53929	270 aa		5.69	□□□□□ -1.5
UBI4	YLL039C	RMT2	Q03305	412 aa		5.69	□□□□□ -1.5
UBI4	YLL039C	NSE3	Q05541	303 aa		5.69	□□□□□ -1.5
UBI4	YLL039C	TDA6	Q06466	467 aa		5.69	□□□□□ -1.5
UBI4	YLL039C	YDL144C	Q07589	356 aa		5.69	□□□□□ -1.5
UBI4	YLL039C	SKN7	P38889	622 aa		5.68	□□□□□ -1.5
UBI4	YLL039C	MAM1	P40065	302 aa		5.68	□□□□□ -1.5
UBI4	YLL039C	UTP22	P53254	1237 aa	Predicted RBP	5.68	□□□□□ -1.5
UBI4	YLL039C	ALE1	Q08548	619 aa		5.68	□□□□□ -1.5
UBI4	YLL039C	PSH1	Q12161	406 aa		5.68	□□□□□ -1.5
UBI4	YLL039C	GPM1	P00950	247 aa	Known RBP	5.67	□□□□□ -1.5
UBI4	YLL039C	RPP0	P05317	312 aa	Known RBP	5.67	□□□□□ -1.5
UBI4	YLL039C	TOS1	P38288	455 aa		5.67	□□□□□ -1.5
UBI4	YLL039C	MDG1	P53885	366 aa		5.67	□□□□□ -1.5
UBI4	YLL039C	YPQ2	Q06328	317 aa		5.67	□□□□□ -1.5
UBI4	YLL039C	RTT109	Q07794	436 aa		5.67	□□□□□ -1.5
UBI4	YLL039C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
UBI4	YLL039C	NYV1	Q12255	253 aa		5.67	□□□□□ -1.5
UBI4	YLL039C	RPS31	P05759	152 aa	Known RBP	5.66	□□□□□ -1.5
UBI4	YLL039C	RDS2	P19541	446 aa	Known RBP	5.66	□□□□□ -1.5
UBI4	YLL039C	PDC6	P26263	563 aa	Known RBP	5.66	□□□□□ -1.5
UBI4	YLL039C	RRT14	P40470	206 aa		5.66	□□□□□ -1.5
UBI4	YLL039C	SAP155	P43612	1002 aa		5.66	□□□□□ -1.5
UBI4	YLL039C	RIM21	P48565	533 aa		5.66	□□□□□ -1.5
UBI4	YLL039C	HEF3	P53978	1044 aa	Known RBP	5.66	□□□□□ -1.5
UBI4	YLL039C	BMS1	Q08965	1183 aa	Known RBP	5.66	□□□□□ -1.5
UBI4	YLL039C	COQ4	O13525	335 aa		5.65	□□□□□ -1.5
UBI4	YLL039C	SWI5	P08153	709 aa		5.65	□□□□□ -1.5
UBI4	YLL039C	FPS1	P23900	669 aa		5.65	□□□□□ -1.5
UBI4	YLL039C	EBP2	P36049	427 aa	Known RBP	5.65	□□□□□ -1.5
UBI4	YLL039C	MRPL16	P38064	232 aa		5.65	□□□□□ -1.5
UBI4	YLL039C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	5.65	□□□□□ -1.5	not detected
UBI4	YLL039C	GYP7	P48365	746 aa		5.65	□□□□□ -1.5
UBI4	YLL039C	LYS2	P07702	1392 aa		5.65	□□□□□ -1.51
UBI4	YLL039C	MCX1	P38323	520 aa	Predicted RBP	5.64	□□□□□ -1.51
UBI4	YLL039C	YBR287W	P38355	427 aa		5.64	□□□□□ -1.51
UBI4	YLL039C	VPS27	P40343	622 aa	Known RBP	5.64	□□□□□ -1.51
UBI4	YLL039C	YFR016C	P43597	1233 aa	Known RBP	5.64	□□□□□ -1.51
UBI4	YLL039C	YMR187C	Q03236	431 aa		5.64	□□□□□ -1.51
UBI4	YLL039C	SSP2	Q08646	371 aa		5.64	□□□□□ -1.51
UBI4	YLL039C	SUI2	P20459	304 aa	Known RBP	5.63	□□□□□ -1.51
UBI4	YLL039C	SER1	P33330	395 aa	Known RBP	5.63	□□□□□ -1.51
UBI4	YLL039C	YNR014W	P53719	212 aa		5.63	□□□□□ -1.51
UBI4	YLL039C	YCK2	P23292	546 aa	Known RBP	5.62	□□□□□ -1.51
UBI4	YLL039C	SPR3	P41901	512 aa		5.62	□□□□□ -1.51
UBI4	YLL039C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.62	□□□□□ -1.51	not detected
UBI4	YLL039C	ZDS2	P54786	942 aa		5.62	□□□□□ -1.51
UBI4	YLL039C	RIX7	Q07844	837 aa	Known RBP	5.62	□□□□□ -1.51
UBI4	YLL039C	YOL057W	Q08225	711 aa		5.62	□□□□□ -1.51
UBI4	YLL039C	CTI6	Q08923	506 aa		5.62	□□□□□ -1.51
UBI4	YLL039C	STB3	Q12427	513 aa		5.62	□□□□□ -1.51
UBI4	YLL039C	UTP10	P42945	1769 aa	Known RBP	5.62	□□□□□ -1.51
UBI4	YLL039C	LPD1	P09624	499 aa	Known RBP	5.61	□□□□□ -1.51
UBI4	YLL039C	APL2	P36000	726 aa	Predicted RBP	5.61	□□□□□ -1.51
UBI4	YLL039C	AIM9	P40053	627 aa	Known RBP	5.61	□□□□□ -1.51
UBI4	YLL039C	EAF6	P47128	113 aa		5.61	□□□□□ -1.51
UBI4	YLL039C	YGL082W	P53155	381 aa		5.61	□□□□□ -1.51
UBI4	YLL039C	SRT1	Q03175	343 aa		5.61	□□□□□ -1.51
UBI4	YLL039C	CDC45	Q08032	650 aa		5.61	□□□□□ -1.51
UBI4	YLL039C	LEU1	P07264	779 aa	Known RBP	5.6	□□□□□ -1.51
UBI4	YLL039C	BOI2	P39969	1040 aa		5.6	□□□□□ -1.51
UBI4	YLL039C	YNL165W	P53891	406 aa		5.6	□□□□□ -1.51
UBI4	YLL039C	DMA2	P53924	522 aa		5.6	□□□□□ -1.51
UBI4	YLL039C	RAT1	Q02792	1006 aa	Known RBP	5.6	□□□□□ -1.51
UBI4	YLL039C	VPS64	Q03944	604 aa		5.6	□□□□□ -1.51
UBI4	YLL039C	TY1A-DR2	Q03964	440 aa	Known RBP	5.6	□□□□□ -1.51
UBI4	YLL039C	RPS6A	P0CX37	236 aa	Known RBP	5.59	□□□□□ -1.51
UBI4	YLL039C	RPS6B	P0CX38	236 aa	Predicted RBP	5.59	□□□□□ -1.51
UBI4	YLL039C	SSA1	P10591	642 aa	Known RBP	5.59	□□□□□ -1.51
UBI4	YLL039C	PDC5	P16467	563 aa	Known RBP	5.59	□□□□□ -1.51
UBI4	YLL039C	KNS1	P32350	737 aa	Predicted RBP	5.59	□□□□□ -1.51
UBI4	YLL039C	YJL007C	P47080	104 aa		5.59	□□□□□ -1.51
UBI4	YLL039C	DNM1	P54861	757 aa		5.59	□□□□□ -1.51
UBI4	YLL039C	YDR215C	Q12240	137 aa		5.59	□□□□□ -1.51
UBI4	YLL039C	RVB2	Q12464	471 aa	Known RBP	5.59	□□□□□ -1.51
UBI4	YLL039C	CTT1	P06115	562 aa		5.58	□□□□□ -1.52
UBI4	YLL039C	PRS1	P32895	427 aa	Known RBP	5.58	□□□□□ -1.52
UBI4	YLL039C	YKL222C	P35995	705 aa		5.58	□□□□□ -1.52
UBI4	YLL039C	ERT1	P38140	529 aa		5.58	□□□□□ -1.52
UBI4	YLL039C	PFF1	P38244	976 aa		5.58	□□□□□ -1.52
UBI4	YLL039C	MRX10	Q05648	414 aa		5.58	□□□□□ -1.52
UBI4	YLL039C	YDR306C	Q06640	478 aa		5.58	□□□□□ -1.52
UBI4	YLL039C	MCM1	P11746	286 aa		5.57	□□□□□ -1.52
UBI4	YLL039C	MSC7	P38694	644 aa		5.57	□□□□□ -1.52
UBI4	YLL039C	SLN1	P39928	1220 aa	Predicted RBP	5.57	□□□□□ -1.52
UBI4	YLL039C	YJR008W	P47085	338 aa		5.57	□□□□□ -1.52
UBI4	YLL039C	YRB30	P53107	440 aa	Predicted RBP	5.57	□□□□□ -1.52
UBI4	YLL039C	DIB1	Q06819	143 aa	Predicted RBP	5.57	□□□□□ -1.52
UBI4	YLL039C	BDF2	Q07442	638 aa		5.57	□□□□□ -1.52
UBI4	YLL039C	SWI1	P09547	1314 aa		5.56	□□□□□ -1.52
UBI4	YLL039C	SBP1	P10080	294 aa	Known RBP	5.56	□□□□□ -1.52
UBI4	YLL039C	MRP7	P12687	371 aa		5.56	□□□□□ -1.52
UBI4	YLL039C	CWH41	P53008	833 aa		5.56	□□□□□ -1.52
UBI4	YLL039C	KIN4	Q01919	800 aa		5.56	□□□□□ -1.52
UBI4	YLL039C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.56	□□□□□ -1.52	not detected
UBI4	YLL039C	HAT1	Q12341	374 aa		5.56	□□□□□ -1.52
UBI4	YLL039C	SSK22	P25390	1331 aa	Predicted RBP	5.55	□□□□□ -1.52
UBI4	YLL039C	ENO1	P00924	437 aa	Known RBP	5.55	□□□□□ -1.52
UBI4	YLL039C	MET1	P36150	593 aa		5.55	□□□□□ -1.52

Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms