RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE2	YKL130C	MSH4	P40965	878 aa	Predicted RBP	4.12	□□□□□ -1.75
SHE2	YKL130C	OYE3	P41816	400 aa	Predicted RBP	4.12	□□□□□ -1.75
SHE2	YKL130C	UTP22	P53254	1237 aa	Predicted RBP	4.12	□□□□□ -1.75
SHE2	YKL130C	RSC4	Q02206	625 aa		4.12	□□□□□ -1.75
SHE2	YKL130C	DUR3	P33413	735 aa		4.11	□□□□□ -1.75
SHE2	YKL130C	YKL222C	P35995	705 aa		4.11	□□□□□ -1.75
SHE2	YKL130C	YCR015C	P25616	317 aa		4.1	□□□□□ -1.75
SHE2	YKL130C	TRE1	Q08919	783 aa		4.1	□□□□□ -1.75
SHE2	YKL130C	PRP5	P21372	849 aa	Predicted RBP	4.09	□□□□□ -1.75
SHE2	YKL130C	ALT1	P52893	592 aa		4.09	□□□□□ -1.75
SHE2	YKL130C	YNL011C	P53980	444 aa		4.09	□□□□□ -1.75
SHE2	YKL130C	EAR1	Q03212	550 aa		4.09	□□□□□ -1.75
SHE2	YKL130C	SSY1	Q03770	852 aa		4.09	□□□□□ -1.75
SHE2	YKL130C	BSC2	Q05611	235 aa		4.09	□□□□□ -1.75
SHE2	YKL130C	AVO1	Q08236	1176 aa		4.09	□□□□□ -1.75
SHE2	YKL130C	NFS1	P25374	497 aa		4.08	□□□□□ -1.76
SHE2	YKL130C	PRO1	P32264	428 aa		4.08	□□□□□ -1.76
SHE2	YKL130C	TSA1	P34760	196 aa	Known RBP	4.08	□□□□□ -1.76
SHE2	YKL130C	ATG1	P53104	897 aa		4.08	□□□□□ -1.76
SHE2	YKL130C	ELA1	P53861	379 aa	Predicted RBP	4.08	□□□□□ -1.76
SHE2	YKL130C	MSH6	Q03834	1242 aa		4.08	□□□□□ -1.76
SHE2	YKL130C	TRS120	Q04183	1289 aa		4.08	□□□□□ -1.76
SHE2	YKL130C	YVC1	Q12324	675 aa		4.08	□□□□□ -1.76
SHE2	YKL130C	SMY2	P32909	740 aa	Known RBP	4.07	□□□□□ -1.76
SHE2	YKL130C	ACF4	P47129	309 aa		4.07	□□□□□ -1.76
SHE2	YKL130C	YGR045C	P53229	120 aa		4.07	□□□□□ -1.76
SHE2	YKL130C	PMT7	Q06644	662 aa		4.07	□□□□□ -1.76
SHE2	YKL130C	CDA2	Q06703	312 aa		4.07	□□□□□ -1.76
SHE2	YKL130C	ESC8	Q08119	714 aa		4.07	□□□□□ -1.76
SHE2	YKL130C	FLP1	P03870	423 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	MCM5	P29496	775 aa	Known RBP	4.06	□□□□□ -1.76
SHE2	YKL130C	NNK1	P36003	928 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	PEX7	P39108	375 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	NUT1	P53114	1132 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	YAF9	P53930	226 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	CDC55	Q00362	526 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	RLF2	Q12495	606 aa		4.06	□□□□□ -1.76
SHE2	YKL130C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-DR6	P0CX70	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-ER1	P0CX71	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-LR2	P0CX72	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-PL	P0CX73	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-JR1	P0CX74	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-LR3	P0CX75	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-ML2	P0CX76	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	PTC7	P38797	343 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TAF1	P46677	1066 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	MON1	P53129	644 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	ORC3	P54790	616 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	INP54	Q08227	384 aa	Known RBP	4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-GR1	Q12085	440 aa		4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.05	□□□□□ -1.76
SHE2	YKL130C	TY1A-OL	Q92392	440 aa	Known RBP	4.05	□□□□□ -1.76
SHE2	YKL130C	YKL077W	P36081	392 aa		4.04	□□□□□ -1.76
SHE2	YKL130C	ARL1	P38116	183 aa	Known RBP	4.04	□□□□□ -1.76
SHE2	YKL130C	GTS1	P40956	396 aa		4.04	□□□□□ -1.76
SHE2	YKL130C	SAP155	P43612	1002 aa		4.04	□□□□□ -1.76
SHE2	YKL130C	MNL2	Q12205	849 aa		4.04	□□□□□ -1.76
SHE2	YKL130C	LPX1	Q12405	387 aa	Known RBP	4.04	□□□□□ -1.76
SHE2	YKL130C	THI80	P35202	319 aa		4.03	□□□□□ -1.76
SHE2	YKL130C	GIP4	P39732	760 aa		4.03	□□□□□ -1.76
SHE2	YKL130C	RVS167	P39743	482 aa	Known RBP	4.03	□□□□□ -1.76
SHE2	YKL130C	GRS1	P38088	690 aa	Known RBP	4.02	□□□□□ -1.77
SHE2	YKL130C	TPP1	Q03796	238 aa		4.02	□□□□□ -1.77
SHE2	YKL130C	PUS7	Q08647	676 aa	Known RBP	4.02	□□□□□ -1.77
SHE2	YKL130C	PRP6	P19735	899 aa	Predicted RBP	4.01	□□□□□ -1.77
SHE2	YKL130C	AIM3	P38266	947 aa	Known RBP	4.01	□□□□□ -1.77
SHE2	YKL130C	SHU2	P38957	223 aa		4.01	□□□□□ -1.77
SHE2	YKL130C	SLS1	P42900	643 aa		4.01	□□□□□ -1.77
SHE2	YKL130C	MRPL22	P53881	309 aa		4.01	□□□□□ -1.77
SHE2	YKL130C	NOC3	Q07896	663 aa	Predicted RBP	4.01	□□□□□ -1.77
SHE2	YKL130C	NMD3	P38861	518 aa	Known RBP	4	□□□□□ -1.77
SHE2	YKL130C	TRL1	P09880	827 aa	Known RBP	3.99	□□□□□ -1.77
SHE2	YKL130C	ATG14	P38270	344 aa		3.99	□□□□□ -1.77
SHE2	YKL130C	EXO5	P38289	585 aa		3.99	□□□□□ -1.77
SHE2	YKL130C	ETP1	P38748	585 aa	Known RBP	3.99	□□□□□ -1.77
SHE2	YKL130C	NEM1	P38757	446 aa		3.99	□□□□□ -1.77
SHE2	YKL130C	YAR028W	P39548	234 aa		3.99	□□□□□ -1.77
SHE2	YKL130C	MTR4	P47047	1073 aa	Known RBP	3.99	□□□□□ -1.77
SHE2	YKL130C	SAM37	P50110	327 aa		3.99	□□□□□ -1.77
SHE2	YKL130C	FOL2	P51601	243 aa	Known RBP	3.99	□□□□□ -1.77
SHE2	YKL130C	YLR257W	Q06146	321 aa	Known RBP	3.99	□□□□□ -1.77
SHE2	YKL130C	RET1	P22276	1149 aa	Known RBP	3.98	□□□□□ -1.77
SHE2	YKL130C	ERP5	P38819	212 aa		3.98	□□□□□ -1.77
SHE2	YKL130C	YDL177C	Q12257	170 aa		3.98	□□□□□ -1.77
SHE2	YKL130C	SSA1	P10591	642 aa	Known RBP	3.97	□□□□□ -1.77
SHE2	YKL130C	FLR1	P38124	548 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	YHL012W	P38709	493 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	HSE1	P38753	452 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	MDJ2	P42834	146 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	RIM8	P53179	542 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	YCS4	Q06156	1176 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	GPI13	Q07830	1017 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	YBL113C	Q7M4S9	792 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	FRT1	Q99332	602 aa		3.97	□□□□□ -1.77
SHE2	YKL130C	CDC3	P32457	520 aa	Known RBP	3.96	□□□□□ -1.78
SHE2	YKL130C	CIC1	P38779	376 aa	Known RBP	3.96	□□□□□ -1.78
SHE2	YKL130C	YNR063W	P53749	607 aa		3.96	□□□□□ -1.78
SHE2	YKL130C	PEX13	P80667	386 aa		3.96	□□□□□ -1.78
SHE2	YKL130C	NUT2	Q06213	157 aa		3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 6.7 ms