RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	YGR237C	P50089	785 aa		4.45	□□□□□ -1.7
NUP85	YJR042W	CDC55	Q00362	526 aa		4.45	□□□□□ -1.7
NUP85	YJR042W	TMA7	Q3E764	64 aa	Known RBP	4.45	□□□□□ -1.7
NUP85	YJR042W	RPA190	P10964	1664 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	YBR184W	P38299	523 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	TIF11	P38912	153 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	DAS1	P47005	663 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	UBX4	P54730	416 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	GCN2	P15442	1659 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	SST2	P11972	698 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	HSC82	P15108	705 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	RPL8B	P29453	256 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	GCD6	P32501	712 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	ISC10	P32645	267 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	NGR1	P32831	672 aa	Known RBP	4.44	□□□□□ -1.7
NUP85	YJR042W	YBR071W	P38243	211 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	SPC105	P53148	917 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	YLR001C	Q07895	862 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	PSH1	Q12161	406 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	GYP5	Q12344	894 aa		4.44	□□□□□ -1.7
NUP85	YJR042W	DNF1	P32660	1571 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	PRE9	P23638	258 aa	Known RBP	4.43	□□□□□ -1.7
NUP85	YJR042W	MEF1	P25039	761 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	PLC1	P32383	869 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	BLI1	P35727	113 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	YAP1801	P38856	637 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	PIC2	P40035	300 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	TFB2	Q02939	513 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	STE20	Q03497	939 aa	Known RBP	4.43	□□□□□ -1.7
NUP85	YJR042W	TAF8	Q03750	510 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	YDL206W	Q12424	762 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	TRS33	Q99394	268 aa		4.43	□□□□□ -1.7
NUP85	YJR042W	TEC1	P18412	486 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	EUG1	P32474	517 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	GNP1	P48813	663 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	YGR125W	P53273	1036 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	YNL011C	P53980	444 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	UFD2	P54860	961 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	BDS1	Q08347	646 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	ECM32	P32644	1121 aa	Known RBP	4.42	□□□□□ -1.7
NUP85	YJR042W	AIM9	P40053	627 aa	Known RBP	4.42	□□□□□ -1.7
NUP85	YJR042W	PEA2	P40091	420 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	PIP2	P52960	996 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	IRC3	Q06683	689 aa		4.42	□□□□□ -1.7
NUP85	YJR042W	GAL1	P04385	528 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	DPB3	P27344	201 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	IXR1	P33417	597 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	SEA4	P38164	1038 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	MUM2	P38236	366 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	AMN1	P38285	549 aa	Predicted RBP	4.41	□□□□□ -1.7
NUP85	YJR042W	NDE1	P40215	560 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	DAN4	P47179	1161 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	SAM37	P50110	327 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	APP1	P53933	587 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	ALO1	P54783	526 aa	Known RBP	4.41	□□□□□ -1.7
NUP85	YJR042W	FMP25	Q08023	583 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	GCR1	P07261	785 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	SEC26	P41810	973 aa	Known RBP	4.41	□□□□□ -1.7
NUP85	YJR042W	MET14	Q02196	202 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	RSC4	Q02206	625 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	HDA3	Q06623	655 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	THI73	Q07904	523 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	REC8	Q12188	680 aa		4.41	□□□□□ -1.7
NUP85	YJR042W	SRB8	P25648	1427 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	TY4B-P	A0A0B7P3V8	1104 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	TRP5	P00931	707 aa	Known RBP	4.4	□□□□□ -1.7
NUP85	YJR042W	HOM3	P10869	527 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	NTH2	P35172	780 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	DCW1	P36091	449 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	YHL008C	P38750	627 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	HSE1	P38753	452 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	FKH1	P40466	484 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	VMS1	Q04311	632 aa	Known RBP	4.4	□□□□□ -1.7
NUP85	YJR042W	NYV1	Q12255	253 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	RTP1	Q12751	981 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	TY4A-H	Q6Q5P6	413 aa		4.4	□□□□□ -1.7
NUP85	YJR042W	SEC3	P33332	1336 aa	Known RBP	4.4	□□□□□ -1.71
NUP85	YJR042W	NUP159	P40477	1460 aa		4.4	□□□□□ -1.71
NUP85	YJR042W	ARO1	P08566	1588 aa	Known RBP	4.4	□□□□□ -1.71
NUP85	YJR042W	SPT2	P06843	333 aa	Predicted RBP	4.4	□□□□□ -1.71
NUP85	YJR042W	YEF3	P16521	1044 aa	Known RBP	4.4	□□□□□ -1.71
NUP85	YJR042W	GUT2	P32191	649 aa		4.4	□□□□□ -1.71
NUP85	YJR042W	PEX6	P33760	1030 aa		4.4	□□□□□ -1.71
NUP85	YJR042W	AIR2	Q12476	344 aa	Known RBP	4.4	□□□□□ -1.71
NUP85	YJR042W	HXT5	P38695	592 aa		4.39	□□□□□ -1.71
NUP85	YJR042W	ESL1	P40456	1118 aa		4.39	□□□□□ -1.71
NUP85	YJR042W	YNL193W	P53870	558 aa		4.39	□□□□□ -1.71
NUP85	YJR042W	YPL109C	Q02981	657 aa		4.39	□□□□□ -1.71
NUP85	YJR042W	UME1	Q03010	460 aa		4.39	□□□□□ -1.71
NUP85	YJR042W	YML131W	Q03102	365 aa		4.39	□□□□□ -1.71
NUP85	YJR042W	TY1B-A	O13527	1196 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	SWI3	P32591	825 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	PDR5	P33302	1511 aa	Known RBP	4.38	□□□□□ -1.71
NUP85	YJR042W	TFC4	P33339	1025 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	HSP78	P33416	811 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	PEX14	P53112	341 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	RSC1	P53236	928 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	PDR12	Q02785	1511 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	DAL4	Q04895	635 aa		4.38	□□□□□ -1.71
NUP85	YJR042W	VIP1	Q06685	1146 aa	Known RBP	4.38	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms