RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W NPL4P33755 580 aa5.88□□□□□ -1.47
VPS29YHR012W GEF1P37020 779 aa5.88□□□□□ -1.47
VPS29YHR012W BOI1P38041 980 aaKnown RBP5.88□□□□□ -1.47
VPS29YHR012W HAL5P38970 855 aaKnown RBP5.88□□□□□ -1.47
VPS29YHR012W ACA1P39970 489 aa5.88□□□□□ -1.47
VPS29YHR012W ULP1Q02724 621 aa5.88□□□□□ -1.47
VPS29YHR012W CDC60P26637 1090 aaKnown RBP5.87□□□□□ -1.47
VPS29YHR012W YNG2P38806 282 aaKnown RBP5.87□□□□□ -1.47
VPS29YHR012W FUN12P39730 1002 aaKnown RBP5.87□□□□□ -1.47
VPS29YHR012W YIR042CP40586 236 aa5.87□□□□□ -1.47
VPS29YHR012W YAF9P53930 226 aa5.87□□□□□ -1.47
VPS29YHR012W RAD2P07276 1031 aa5.86□□□□□ -1.47
VPS29YHR012W ERG12P07277 443 aa5.86□□□□□ -1.47
VPS29YHR012W DIT2P21595 489 aa5.86□□□□□ -1.47
VPS29YHR012W PER1P25625 357 aa5.86□□□□□ -1.47
VPS29YHR012W IXR1P33417 597 aa5.86□□□□□ -1.47
VPS29YHR012W LDH1P38139 375 aa5.86□□□□□ -1.47
VPS29YHR012W EAR1Q03212 550 aa5.86□□□□□ -1.47
VPS29YHR012W NAB6Q03735 1134 aaKnown RBP RIP-Chip data5.86□□□□□ -1.47not detected
VPS29YHR012W TAO3P40468 2376 aa5.85□□□□□ -1.47
VPS29YHR012W PRT1P06103 763 aaKnown RBP5.85□□□□□ -1.47
VPS29YHR012W MAL31P38156 614 aa5.85□□□□□ -1.47
VPS29YHR012W YNL193WP53870 558 aa5.85□□□□□ -1.47
VPS29YHR012W GCD7P32502 381 aaPredicted RBP5.84□□□□□ -1.47
VPS29YHR012W CST26P38226 397 aa5.84□□□□□ -1.47
VPS29YHR012W MXR1P40029 184 aa5.84□□□□□ -1.47
VPS29YHR012W YFL040WP43562 540 aa5.84□□□□□ -1.47
VPS29YHR012W CLA4P48562 842 aa5.84□□□□□ -1.47
VPS29YHR012W VPS62P53285 467 aa5.84□□□□□ -1.47
VPS29YHR012W RPN7Q06103 429 aaKnown RBP5.84□□□□□ -1.47
VPS29YHR012W YDL124WQ07551 312 aaKnown RBP5.84□□□□□ -1.47
VPS29YHR012W KEL3Q08979 651 aaPredicted RBP5.84□□□□□ -1.47
VPS29YHR012W RVB2Q12464 471 aaKnown RBP5.84□□□□□ -1.47
VPS29YHR012W SRS2P12954 1174 aa5.83□□□□□ -1.48
VPS29YHR012W PKC1P24583 1151 aa5.83□□□□□ -1.48
VPS29YHR012W YDJ1P25491 409 aaKnown RBP5.83□□□□□ -1.48
VPS29YHR012W WHI3P34761 661 aaKnown RBP5.83□□□□□ -1.48
VPS29YHR012W YIL092WP40497 633 aa5.83□□□□□ -1.48
VPS29YHR012W AIM21P40563 679 aa5.83□□□□□ -1.48
VPS29YHR012W ENP2P48234 707 aaKnown RBP5.83□□□□□ -1.48
VPS29YHR012W YLR326WQ06170 240 aaKnown RBP5.83□□□□□ -1.48
VPS29YHR012W ICL2Q12031 575 aa5.83□□□□□ -1.48
VPS29YHR012W TUB2P02557 457 aaKnown RBP5.82□□□□□ -1.48
VPS29YHR012W SPB4P25808 606 aaPredicted RBP5.82□□□□□ -1.48
VPS29YHR012W GPB2P39717 880 aa5.82□□□□□ -1.48
VPS29YHR012W IOC3P43596 787 aa5.82□□□□□ -1.48
VPS29YHR012W YJL007CP47080 104 aa5.82□□□□□ -1.48
VPS29YHR012W YGL242CP53066 181 aa5.82□□□□□ -1.48
VPS29YHR012W FMP30Q02883 468 aa5.82□□□□□ -1.48
VPS29YHR012W YPL260WQ08977 551 aa5.82□□□□□ -1.48
VPS29YHR012W VMA2P16140 517 aaKnown RBP5.81□□□□□ -1.48
VPS29YHR012W PRE8P23639 250 aa5.81□□□□□ -1.48
VPS29YHR012W SLA1P32790 1244 aa5.81□□□□□ -1.48
VPS29YHR012W RAD54P32863 898 aa5.81□□□□□ -1.48
VPS29YHR012W YKR018CP36114 725 aa5.81□□□□□ -1.48
VPS29YHR012W GRX7P38068 203 aa5.81□□□□□ -1.48
VPS29YHR012W UBP14P38237 781 aaKnown RBP5.81□□□□□ -1.48
VPS29YHR012W MLC1P53141 149 aa5.81□□□□□ -1.48
VPS29YHR012W SPO1P53541 631 aa5.81□□□□□ -1.48
VPS29YHR012W BUD20Q08004 166 aaPredicted RBP5.81□□□□□ -1.48
VPS29YHR012W MET7Q08645 548 aa5.81□□□□□ -1.48
VPS29YHR012W LAP2Q10740 671 aa5.81□□□□□ -1.48
VPS29YHR012W CDC19P00549 500 aaKnown RBP5.8□□□□□ -1.48
VPS29YHR012W PES4P39684 611 aa5.8□□□□□ -1.48
VPS29YHR012W SOL4P53315 255 aa5.8□□□□□ -1.48
VPS29YHR012W NSG2P53898 299 aa5.8□□□□□ -1.48
VPS29YHR012W ECM30Q06673 1274 aa5.8□□□□□ -1.48
VPS29YHR012W PRE10P21242 288 aaKnown RBP RIP-Chip data5.79□□□□□ -1.48not detected
VPS29YHR012W SRM1P21827 482 aa5.79□□□□□ -1.48
VPS29YHR012W EUG1P32474 517 aa5.79□□□□□ -1.48
VPS29YHR012W TOM71P38825 639 aaKnown RBP5.79□□□□□ -1.48
VPS29YHR012W FIR1P40020 876 aa5.79□□□□□ -1.48
VPS29YHR012W AIR1P40507 360 aaKnown RBP5.79□□□□□ -1.48
VPS29YHR012W IRC8P47046 822 aa5.79□□□□□ -1.48
VPS29YHR012W YPL034WQ03083 165 aa5.79□□□□□ -1.48
VPS29YHR012W UBX5Q06682 500 aa5.79□□□□□ -1.48
VPS29YHR012W YOR131CQ12486 218 aa5.79□□□□□ -1.48
VPS29YHR012W PBY1P38254 753 aa5.78□□□□□ -1.48
VPS29YHR012W OSH3P38713 996 aaKnown RBP5.78□□□□□ -1.48
VPS29YHR012W TIF4631P39935 952 aaKnown RBP5.78□□□□□ -1.48
VPS29YHR012W YJR107WP47145 328 aa5.78□□□□□ -1.48
VPS29YHR012W SUT2Q12286 268 aa5.78□□□□□ -1.48
VPS29YHR012W FLO1P32768 1537 aa5.78□□□□□ -1.48
VPS29YHR012W RGT1P32862 1170 aa5.77□□□□□ -1.49
VPS29YHR012W UIP5P36137 443 aa5.77□□□□□ -1.49
VPS29YHR012W RTS1P38903 757 aa5.77□□□□□ -1.49
VPS29YHR012W FPR3P38911 411 aaKnown RBP5.77□□□□□ -1.49
VPS29YHR012W SLN1P39928 1220 aaPredicted RBP5.77□□□□□ -1.49
VPS29YHR012W BDP1P46678 594 aa5.77□□□□□ -1.49
VPS29YHR012W YVH1Q02256 364 aaKnown RBP5.77□□□□□ -1.49
VPS29YHR012W YML037CQ03703 340 aa5.77□□□□□ -1.49
VPS29YHR012W SKG3Q06315 1026 aa5.77□□□□□ -1.49
VPS29YHR012W MDM20Q12387 796 aaKnown RBP5.77□□□□□ -1.49
VPS29YHR012W VPS13Q07878 3144 aa5.77□□□□□ -1.49
VPS29YHR012W PDR18P53756 1333 aa5.76□□□□□ -1.49
VPS29YHR012W NOT3P06102 836 aaKnown RBP5.76□□□□□ -1.49
VPS29YHR012W KRS1P15180 591 aaKnown RBP5.76□□□□□ -1.49
VPS29YHR012W MSC7P38694 644 aa5.76□□□□□ -1.49
VPS29YHR012W NMD2P38798 1089 aaKnown RBP5.76□□□□□ -1.49
VPS29YHR012W RRP8P38961 392 aaKnown RBP5.76□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 48.4 ms