RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 FANCIQ9NVI1 1328 aa12.83□□□□□ -0.36
VTA1-205ENST00000620996 XRN1Q8IZH2 1706 aaKnown RBP12.83□□□□□ -0.36
VTA1-205ENST00000620996 CLUAP1Q96AJ1 413 aa12.82□□□□□ -0.36
VTA1-205ENST00000620996 SETD1BQ9UPS6 1966 aaKnown RBP12.82□□□□□ -0.36
VTA1-205ENST00000620996 LRRC7Q96NW7 1537 aa12.82□□□□□ -0.36
VTA1-205ENST00000620996 PANK1Q8TE04 598 aa12.82□□□□□ -0.36
VTA1-205ENST00000620996 CDK12Q9NYV4 1490 aaPredicted RBP12.82□□□□□ -0.36
VTA1-205ENST00000620996 NFE2L2Q16236 605 aa12.82□□□□□ -0.36
VTA1-205ENST00000620996 PHF23Q9BUL5 403 aaPredicted RBP12.82□□□□□ -0.36
VTA1-205ENST00000620996 RGPD8O14715 1765 aaPredicted RBP12.81□□□□□ -0.36
VTA1-205ENST00000620996 MAP3K19Q56UN5 1328 aa12.81□□□□□ -0.36
VTA1-205ENST00000620996 RARSP54136 660 aaKnown RBP12.81□□□□□ -0.36
VTA1-205ENST00000620996 COG6Q9Y2V7 657 aa12.81□□□□□ -0.36
VTA1-205ENST00000620996 SMC4Q9NTJ3 1288 aa12.8□□□□□ -0.36
VTA1-205ENST00000620996 ZNF142P52746 1687 aaPredicted RBP12.8□□□□□ -0.36
VTA1-205ENST00000620996 TOPAZ1Q8N9V7 1692 aa12.8□□□□□ -0.36
VTA1-205ENST00000620996 UBE2Q2Q8WVN8 375 aa12.8□□□□□ -0.36
VTA1-205ENST00000620996 OVOS2A0A0J9YW53 1432 aa12.8□□□□□ -0.36
VTA1-205ENST00000620996 OVOS2Q6IE36 1432 aa12.8□□□□□ -0.36
VTA1-205ENST00000620996 DCTN1Q14203 1278 aa12.8□□□□□ -0.36
VTA1-205ENST00000620996 FAM83GA6ND36 823 aa12.79□□□□□ -0.36
VTA1-205ENST00000620996 FOXO3O43524 673 aa12.79□□□□□ -0.36
VTA1-205ENST00000620996 ORAI2Q96SN7 254 aa12.79□□□□□ -0.36
VTA1-205ENST00000620996 ELL2O00472 640 aaPredicted RBP12.79□□□□□ -0.36
VTA1-205ENST00000620996 ANKARQ7Z5J8 1434 aa12.79□□□□□ -0.36
VTA1-205ENST00000620996 SKAP1Q86WV1 359 aa12.78□□□□□ -0.36
VTA1-205ENST00000620996 TNNQ9UQP3 1299 aa12.78□□□□□ -0.36
VTA1-205ENST00000620996 FTSJ3Q8IY81 847 aaKnown RBP12.78□□□□□ -0.36
VTA1-205ENST00000620996 ADGRL3Q9HAR2 1447 aa12.77□□□□□ -0.37
VTA1-205ENST00000620996 NRKQ7Z2Y5 1582 aa12.76□□□□□ -0.37
VTA1-205ENST00000620996 TCERG1O14776 1098 aaKnown RBP12.76□□□□□ -0.37
VTA1-205ENST00000620996 LMOD3Q0VAK6 560 aa12.76□□□□□ -0.37
VTA1-205ENST00000620996 NBR1Q14596 966 aa12.76□□□□□ -0.37
VTA1-205ENST00000620996 CALD1Q05682 793 aaKnown RBP12.76□□□□□ -0.37
VTA1-205ENST00000620996 NALCNQ8IZF0 1738 aa12.76□□□□□ -0.37
VTA1-205ENST00000620996 SSH2Q76I76 1423 aa12.76□□□□□ -0.37
VTA1-205ENST00000620996 CHD2O14647 1828 aaKnown RBP12.75□□□□□ -0.37
VTA1-205ENST00000620996 FLT4P35916 1363 aa12.75□□□□□ -0.37
VTA1-205ENST00000620996 ATF3P18847 181 aa12.75□□□□□ -0.37
VTA1-205ENST00000620996 USP31Q70CQ4 1352 aa12.75□□□□□ -0.37
VTA1-205ENST00000620996 MCM10Q7L590 875 aa12.75□□□□□ -0.37
VTA1-205ENST00000620996 FMN2Q9NZ56 1722 aa12.74□□□□□ -0.37
VTA1-205ENST00000620996 SBNO1A3KN83 1393 aa12.74□□□□□ -0.37
VTA1-205ENST00000620996 SSH1Q8WYL5 1049 aa12.74□□□□□ -0.37
VTA1-205ENST00000620996 IL16Q14005 1332 aa12.74□□□□□ -0.37
VTA1-205ENST00000620996 NCBP3Q53F19 620 aaKnown RBP12.74□□□□□ -0.37
VTA1-205ENST00000620996 USHBP1Q8N6Y0 703 aa12.74□□□□□ -0.37
VTA1-205ENST00000620996 GNAI1P63096 354 aa12.73□□□□□ -0.37
VTA1-205ENST00000620996 PDE3AQ14432 1141 aa12.73□□□□□ -0.37
VTA1-205ENST00000620996 ZKSCAN2Q63HK3 967 aa12.73□□□□□ -0.37
VTA1-205ENST00000620996 RLBP1P12271 317 aa12.73□□□□□ -0.37
VTA1-205ENST00000620996 HOXC9P31274 260 aa12.72□□□□□ -0.37
VTA1-205ENST00000620996 RTF1Q92541 710 aaKnown RBP12.72□□□□□ -0.37
VTA1-205ENST00000620996 EYA1Q99502 592 aa12.72□□□□□ -0.37
VTA1-205ENST00000620996 MBIPQ9NS73 344 aa12.72□□□□□ -0.37
VTA1-205ENST00000620996 NOB1Q9ULX3 412 aaKnown RBP12.72□□□□□ -0.37
VTA1-205ENST00000620996 ITPRIPQ8IWB1 547 aa12.72□□□□□ -0.37
VTA1-205ENST00000620996 DDX17Q92841 729 aaKnown RBP12.72□□□□□ -0.37
VTA1-205ENST00000620996 C19orf44Q9H6X5 657 aa12.72□□□□□ -0.37
VTA1-205ENST00000620996 PIK3C2AO00443 1686 aa12.71□□□□□ -0.37
VTA1-205ENST00000620996 RGS3P49796 1198 aa12.71□□□□□ -0.37
VTA1-205ENST00000620996 IL27Q8NEV9 243 aa12.71□□□□□ -0.37
VTA1-205ENST00000620996 DZIP1LQ8IYY4 767 aaKnown RBP12.71□□□□□ -0.38
VTA1-205ENST00000620996 PEAK1Q9H792 1746 aa12.7□□□□□ -0.38
VTA1-205ENST00000620996 TMEM94Q12767 1356 aa12.7□□□□□ -0.38
VTA1-205ENST00000620996 CENPQQ7L2Z9 268 aaPredicted RBP12.7□□□□□ -0.38
VTA1-205ENST00000620996 KRT28Q7Z3Y7 464 aa12.7□□□□□ -0.38
VTA1-205ENST00000620996 IFT57Q9NWB7 429 aa12.7□□□□□ -0.38
VTA1-205ENST00000620996 CT47B1P0C2W7 299 aaPredicted RBP12.7□□□□□ -0.38
VTA1-205ENST00000620996 TSPYL6Q8N831 410 aa12.7□□□□□ -0.38
VTA1-205ENST00000620996 MIS18AQ9NYP9 233 aa12.7□□□□□ -0.38
VTA1-205ENST00000620996 MTHFSDQ2M296 383 aaKnown RBP12.69□□□□□ -0.38
VTA1-205ENST00000620996 TWISTNBQ3B726 338 aaPredicted RBP12.69□□□□□ -0.38
VTA1-205ENST00000620996 PKNOX2Q96KN3 472 aa12.69□□□□□ -0.38
VTA1-205ENST00000620996 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
VTA1-205ENST00000620996 TRIM27P14373 513 aa12.68□□□□□ -0.38
VTA1-205ENST00000620996 NPM2Q86SE8 214 aaKnown RBP12.68□□□□□ -0.38
VTA1-205ENST00000620996 ARHGEF10O15013 1369 aa12.68□□□□□ -0.38
VTA1-205ENST00000620996 IPO8O15397 1037 aaKnown RBP12.67□□□□□ -0.38
VTA1-205ENST00000620996 MS4A1P11836 297 aa12.67□□□□□ -0.38
VTA1-205ENST00000620996 ATF7IPQ6VMQ6 1270 aa12.67□□□□□ -0.38
VTA1-205ENST00000620996 C8orf58Q8NAV2 365 aa12.67□□□□□ -0.38
VTA1-205ENST00000620996 KCNH5Q8NCM2 988 aa12.67□□□□□ -0.38
VTA1-205ENST00000620996 ZC3H6P61129 1189 aaKnown RBP12.67□□□□□ -0.38
VTA1-205ENST00000620996 KRT24Q2M2I5 525 aa12.67□□□□□ -0.38
VTA1-205ENST00000620996 KIF16BQ96L93 1317 aa12.67□□□□□ -0.38
VTA1-205ENST00000620996 MVPQ14764 893 aaKnown RBP12.66□□□□□ -0.38
VTA1-205ENST00000620996 IGHDP01880 384 aa12.66□□□□□ -0.38
VTA1-205ENST00000620996 GAS2L2Q8NHY3 880 aa12.66□□□□□ -0.38
VTA1-205ENST00000620996 LRRC59Q96AG4 307 aaKnown RBP12.66□□□□□ -0.38
VTA1-205ENST00000620996 KDM4FA0A1W2PPD8 638 aa12.66□□□□□ -0.38
VTA1-205ENST00000620996 GCP02774 474 aa12.66□□□□□ -0.38
VTA1-205ENST00000620996 IGSF1Q8N6C5 1336 aa12.65□□□□□ -0.38
VTA1-205ENST00000620996 TSPYL4Q9UJ04 414 aa12.65□□□□□ -0.38
VTA1-205ENST00000620996 KDM2BQ8NHM5 1336 aa12.65□□□□□ -0.38
VTA1-205ENST00000620996 VAMP4O75379 141 aa12.65□□□□□ -0.38
VTA1-205ENST00000620996 TMEM57Q8N5G2 664 aa12.65□□□□□ -0.38
VTA1-205ENST00000620996 C1orf167Q5SNV9 1468 aa12.65□□□□□ -0.38
VTA1-205ENST00000620996 IP6K1Q92551 441 aa12.64□□□□□ -0.39
VTA1-205ENST00000620996 ZNF853P0CG23 659 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms