RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 KIAA1210Q9ULL0 1709 aa7.34□□□□□ -1.23
LIMA1-203ENST00000547825 ANKRD50Q9ULJ7 1429 aa7.34□□□□□ -1.23
LIMA1-203ENST00000547825 MAP3K7O43318 606 aa7.34□□□□□ -1.23
LIMA1-203ENST00000547825 GPCPD1Q9NPB8 672 aa7.34□□□□□ -1.23
LIMA1-203ENST00000547825 TONSLQ96HA7 1378 aa7.34□□□□□ -1.23
LIMA1-203ENST00000547825 SNRKQ9NRH2 765 aa7.33□□□□□ -1.24
LIMA1-203ENST00000547825 C11orf95C9JLR9 678 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-203ENST00000547825 COLQQ9Y215 455 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-203ENST00000547825 ANKRD30AQ9BXX3 1397 aa7.33□□□□□ -1.24
LIMA1-203ENST00000547825 UHRF1BP1Q6BDS2 1440 aa7.33□□□□□ -1.24
LIMA1-203ENST00000547825 CHIC2Q9UKJ5 165 aa7.33□□□□□ -1.24
LIMA1-203ENST00000547825 ATMINO43313 823 aaPredicted RBP7.33□□□□□ -1.24
LIMA1-203ENST00000547825 TBC1D12O60347 775 aa7.32□□□□□ -1.24
LIMA1-203ENST00000547825 MYT1LQ9UL68 1186 aa7.32□□□□□ -1.24
LIMA1-203ENST00000547825 EN1Q05925 392 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-203ENST00000547825 NALCNQ8IZF0 1738 aa7.31□□□□□ -1.24
LIMA1-203ENST00000547825 SKIV2LQ15477 1246 aaKnown RBP7.31□□□□□ -1.24
LIMA1-203ENST00000547825 CLCN1P35523 988 aa7.31□□□□□ -1.24
LIMA1-203ENST00000547825 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIMA1-203ENST00000547825 NOP58Q9Y2X3 529 aaKnown RBP7.31□□□□□ -1.24
LIMA1-203ENST00000547825 MYSM1Q5VVJ2 828 aa7.31□□□□□ -1.24
LIMA1-203ENST00000547825 PCDHGA10Q9Y5H3 936 aa7.31□□□□□ -1.24
LIMA1-203ENST00000547825 COG6Q9Y2V7 657 aa7.3□□□□□ -1.24
LIMA1-203ENST00000547825 CPS1P31327 1500 aa7.3□□□□□ -1.24
LIMA1-203ENST00000547825 ASXL1Q8IXJ9 1541 aa7.3□□□□□ -1.24
LIMA1-203ENST00000547825 METTL3Q86U44 580 aaKnown RBP7.3□□□□□ -1.24
LIMA1-203ENST00000547825 FAM217BQ9NTX9 383 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-203ENST00000547825 ZBTB7CA1YPR0 619 aa7.3□□□□□ -1.24
LIMA1-203ENST00000547825 G3V3G9 751 aa7.3□□□□□ -1.24
LIMA1-203ENST00000547825 WASHC2AQ641Q2 1341 aa7.3□□□□□ -1.24
LIMA1-203ENST00000547825 NEFMP07197 916 aa7.29□□□□□ -1.24
LIMA1-203ENST00000547825 AEBP1Q8IUX7 1158 aa7.29□□□□□ -1.24
LIMA1-203ENST00000547825 CRYBG1Q9Y4K1 1723 aa7.28□□□□□ -1.24
LIMA1-203ENST00000547825 SPATA31E1Q6ZUB1 1445 aa7.28□□□□□ -1.24
LIMA1-203ENST00000547825 TNRQ92752 1358 aa7.28□□□□□ -1.24
LIMA1-203ENST00000547825 TMC1Q8TDI8 760 aa7.28□□□□□ -1.24
LIMA1-203ENST00000547825 NHSL1Q5SYE7 1610 aa7.28□□□□□ -1.24
LIMA1-203ENST00000547825 ASTLQ6HA08 431 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-203ENST00000547825 PLCG2P16885 1265 aa7.27□□□□□ -1.25
LIMA1-203ENST00000547825 PTCD2Q8WV60 388 aaKnown RBP7.27□□□□□ -1.25
LIMA1-203ENST00000547825 ANO8Q9HCE9 1232 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-203ENST00000547825 PLSCR2Q9NRY7 297 aa7.27□□□□□ -1.25
LIMA1-203ENST00000547825 PPP4R2Q9NY27 417 aa7.27□□□□□ -1.25
LIMA1-203ENST00000547825 LIMD1Q9UGP4 676 aa7.27□□□□□ -1.25
LIMA1-203ENST00000547825 RETREG2Q8NC44 543 aa7.27□□□□□ -1.25
LIMA1-203ENST00000547825 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-203ENST00000547825 SCAF11Q99590 1463 aaKnown RBP7.26□□□□□ -1.25
LIMA1-203ENST00000547825 ARHGEF28Q8N1W1 1705 aaKnown RBP7.26□□□□□ -1.25
LIMA1-203ENST00000547825 PADI6Q6TGC4 694 aa7.26□□□□□ -1.25
LIMA1-203ENST00000547825 ADGRB2O60241 1585 aa7.26□□□□□ -1.25
LIMA1-203ENST00000547825 ADAMTS13Q76LX8 1427 aa7.26□□□□□ -1.25
LIMA1-203ENST00000547825 TOPAZ1Q8N9V7 1692 aa7.26□□□□□ -1.25
LIMA1-203ENST00000547825 KCTD17Q8N5Z5 321 aa7.26□□□□□ -1.25
LIMA1-203ENST00000547825 GDPD2Q9HCC8 539 aa7.26□□□□□ -1.25
LIMA1-203ENST00000547825 POTEFA5A3E0 1075 aa7.25□□□□□ -1.25
LIMA1-203ENST00000547825 RFC5P40937 340 aa7.25□□□□□ -1.25
LIMA1-203ENST00000547825 LRRC7Q96NW7 1537 aa7.25□□□□□ -1.25
LIMA1-203ENST00000547825 MYOM2P54296 1465 aa7.25□□□□□ -1.25
LIMA1-203ENST00000547825 CEBPAP49715 358 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-203ENST00000547825 CCDC9Q9Y3X0 531 aaKnown RBP7.25□□□□□ -1.25
LIMA1-203ENST00000547825 ADGRB1O14514 1584 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 NKTRP30414 1462 aaKnown RBP7.24□□□□□ -1.25
LIMA1-203ENST00000547825 CANXP27824 592 aaKnown RBP7.24□□□□□ -1.25
LIMA1-203ENST00000547825 RAD21O60216 631 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 CLK2P49760 499 aaKnown RBP7.24□□□□□ -1.25
LIMA1-203ENST00000547825 IRF5Q13568 498 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 CCDC97Q96F63 343 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-203ENST00000547825 TBC1D2Q9BYX2 928 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 SLAIN1Q8ND83 568 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 PXYLP1Q8TE99 480 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 RRP7BPQ9NSQ0 103 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 USP32Q8NFA0 1604 aa7.24□□□□□ -1.25
LIMA1-203ENST00000547825 CCER2I3L3R5 266 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 PHF14O94880 888 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 MTMR14Q8NCE2 650 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 FMN2Q9NZ56 1722 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 ZNF330Q9Y3S2 320 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-203ENST00000547825 TRPM1Q7Z4N2 1603 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 MARF1Q9Y4F3 1742 aaKnown RBP7.23□□□□□ -1.25
LIMA1-203ENST00000547825 POM121CA8CG34 1229 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 CSPP1Q1MSJ5 1256 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 USP54Q70EL1 1684 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 ABCA3Q99758 1704 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 TMEM2Q9UHN6 1383 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 ADGRG1Q9Y653 693 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 SHPRHQ149N8 1683 aa7.23□□□□□ -1.25
LIMA1-203ENST00000547825 IER5LQ5T953 404 aa7.22□□□□□ -1.25
LIMA1-203ENST00000547825 COL22A1Q8NFW1 1626 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-203ENST00000547825 KIF3BO15066 747 aa7.22□□□□□ -1.25
LIMA1-203ENST00000547825 TSPY4P0CV99 314 aa7.22□□□□□ -1.25
LIMA1-203ENST00000547825 TSPY10P0CW01 314 aa7.22□□□□□ -1.25
LIMA1-203ENST00000547825 EIF4G2P78344 907 aaKnown RBP eCLIP7.22□□□□□ -1.25
LIMA1-203ENST00000547825 PLEKHG1Q9ULL1 1385 aa7.22□□□□□ -1.25
LIMA1-203ENST00000547825 NPHP4O75161 1426 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-203ENST00000547825 SPDYE5A6NIY4 337 aa7.21□□□□□ -1.25
LIMA1-203ENST00000547825 NBPF8Q3BBV2 869 aa7.21□□□□□ -1.25
LIMA1-203ENST00000547825 CARNS1A5YM72 827 aa7.21□□□□□ -1.26
LIMA1-203ENST00000547825 HAX1O00165 279 aa7.21□□□□□ -1.26
LIMA1-203ENST00000547825 HSPA5P11021 654 aaKnown RBP7.21□□□□□ -1.26
LIMA1-203ENST00000547825 QPCTQ16769 361 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms