RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 A0A1W2PP64 1363 aa21.79■■□□□ 1.08
RAB40C-205ENST00000539661 POGZQ7Z3K3 1410 aa21.78■■□□□ 1.08
RAB40C-205ENST00000539661 PNPLA6Q8IY17 1366 aa21.78■■□□□ 1.08
RAB40C-205ENST00000539661 FRMPD1Q5SYB0 1578 aa21.77■■□□□ 1.08
RAB40C-205ENST00000539661 NPATQ14207 1427 aa21.77■■□□□ 1.08
RAB40C-205ENST00000539661 RBM42Q9BTD8 480 aaKnown RBP21.76■■□□□ 1.07
RAB40C-205ENST00000539661 YEATS2Q9ULM3 1422 aa21.76■■□□□ 1.07
RAB40C-205ENST00000539661 DIAPH1O60610 1272 aaKnown RBP21.76■■□□□ 1.07
RAB40C-205ENST00000539661 CYP2E1P05181 493 aaPredicted RBP21.75■■□□□ 1.07
RAB40C-205ENST00000539661 CALD1Q05682 793 aaKnown RBP21.75■■□□□ 1.07
RAB40C-205ENST00000539661 MAP7D2Q96T17 732 aa21.75■■□□□ 1.07
RAB40C-205ENST00000539661 SAFB2Q14151 953 aaKnown RBP eCLIP21.75■■□□□ 1.07
RAB40C-205ENST00000539661 ZNF500O60304 480 aaPredicted RBP21.74■■□□□ 1.07
RAB40C-205ENST00000539661 FCHSD2O94868 740 aa21.74■■□□□ 1.07
RAB40C-205ENST00000539661 FAM69CQ0P6D2 419 aa21.74■■□□□ 1.07
RAB40C-205ENST00000539661 PDLIM2Q96JY6 352 aa21.74■■□□□ 1.07
RAB40C-205ENST00000539661 CABP2Q9NPB3 220 aa21.74■■□□□ 1.07
RAB40C-205ENST00000539661 NOL7Q9UMY1 257 aaKnown RBP21.74■■□□□ 1.07
RAB40C-205ENST00000539661 ZFYVE9O95405 1425 aa21.74■■□□□ 1.07
RAB40C-205ENST00000539661 MRPL50Q8N5N7 158 aaKnown RBP21.74■■□□□ 1.07
RAB40C-205ENST00000539661 CWC22Q9HCG8 908 aaKnown RBP21.74■■□□□ 1.07
RAB40C-205ENST00000539661 CAMSAP1Q5T5Y3 1602 aa21.73■■□□□ 1.07
RAB40C-205ENST00000539661 ABCC4O15439 1325 aa21.72■■□□□ 1.07
RAB40C-205ENST00000539661 GGNBP2Q9H3C7 697 aa21.72■■□□□ 1.07
RAB40C-205ENST00000539661 LMBRD1Q9NUN5 540 aa21.72■■□□□ 1.07
RAB40C-205ENST00000539661 ATAD2Q6PL18 1390 aa21.72■■□□□ 1.07
RAB40C-205ENST00000539661 ZSCAN23Q3MJ62 389 aa21.72■■□□□ 1.07
RAB40C-205ENST00000539661 PIK3C2BO00750 1634 aa21.72■■□□□ 1.07
RAB40C-205ENST00000539661 VGFO15240 615 aaPredicted RBP21.71■■□□□ 1.07
RAB40C-205ENST00000539661 TERF2IPQ9NYB0 399 aa21.71■■□□□ 1.07
RAB40C-205ENST00000539661 LRRC7Q96NW7 1537 aa21.71■■□□□ 1.07
RAB40C-205ENST00000539661 KIF24Q5T7B8 1368 aa21.71■■□□□ 1.07
RAB40C-205ENST00000539661 FAM135BQ49AJ0 1406 aa21.71■■□□□ 1.07
RAB40C-205ENST00000539661 MCTP1Q6DN14 999 aa21.71■■□□□ 1.07
RAB40C-205ENST00000539661 SIRT2Q8IXJ6 389 aa21.71■■□□□ 1.07
RAB40C-205ENST00000539661 FYB1O15117 783 aa21.7■■□□□ 1.06
RAB40C-205ENST00000539661 VAMP4O75379 141 aa21.7■■□□□ 1.06
RAB40C-205ENST00000539661 NEXMIFQ5QGS0 1516 aa21.7■■□□□ 1.06
RAB40C-205ENST00000539661 MCM5P33992 734 aa21.7■■□□□ 1.06
RAB40C-205ENST00000539661 FBXO31Q5XUX0 539 aaPredicted RBP21.7■■□□□ 1.06
RAB40C-205ENST00000539661 HECW2Q9P2P5 1572 aa21.7■■□□□ 1.06
RAB40C-205ENST00000539661 CLTCQ00610 1675 aaKnown RBP21.69■■□□□ 1.06
RAB40C-205ENST00000539661 MLECQ14165 292 aa21.69■■□□□ 1.06
RAB40C-205ENST00000539661 CAVIN1Q6NZI2 390 aaKnown RBP21.69■■□□□ 1.06
RAB40C-205ENST00000539661 GSPT1P15170 499 aaKnown RBP21.68■■□□□ 1.06
RAB40C-205ENST00000539661 C1orf115Q9H7X2 142 aa21.67■■□□□ 1.06
RAB40C-205ENST00000539661 AK9Q5TCS8 1911 aa21.67■■□□□ 1.06
RAB40C-205ENST00000539661 CSPP1Q1MSJ5 1256 aa21.67■■□□□ 1.06
RAB40C-205ENST00000539661 PLEKHM2Q8IWE5 1019 aa21.67■■□□□ 1.06
RAB40C-205ENST00000539661 USP26Q9BXU7 913 aa21.66■■□□□ 1.06
RAB40C-205ENST00000539661 RBSNQ9H1K0 784 aa21.66■■□□□ 1.06
RAB40C-205ENST00000539661 CD163L1Q9NR16 1453 aa21.66■■□□□ 1.06
RAB40C-205ENST00000539661 KIF20BQ96Q89 1820 aa21.66■■□□□ 1.06
RAB40C-205ENST00000539661 GNAI1P63096 354 aa21.65■■□□□ 1.06
RAB40C-205ENST00000539661 TTC22Q5TAA0 569 aa21.65■■□□□ 1.06
RAB40C-205ENST00000539661 API5Q9BZZ5 524 aaKnown RBP21.65■■□□□ 1.06
RAB40C-205ENST00000539661 IFT57Q9NWB7 429 aa21.65■■□□□ 1.06
RAB40C-205ENST00000539661 TSPOAP1O95153 1857 aa21.65■■□□□ 1.06
RAB40C-205ENST00000539661 SRPK2P78362 688 aaKnown RBP21.65■■□□□ 1.06
RAB40C-205ENST00000539661 IDI1Q13907 227 aa21.65■■□□□ 1.06
RAB40C-205ENST00000539661 INTS3Q68E01 1043 aaKnown RBP21.65■■□□□ 1.06
RAB40C-205ENST00000539661 NEO1Q92859 1461 aa21.65■■□□□ 1.06
RAB40C-205ENST00000539661 MLH3Q9UHC1 1453 aa21.64■■□□□ 1.06
RAB40C-205ENST00000539661 NCLP19338 710 aaKnown RBP21.64■■□□□ 1.06
RAB40C-205ENST00000539661 MTERF4Q7Z6M4 381 aaKnown RBP21.64■■□□□ 1.06
RAB40C-205ENST00000539661 NFE2L2Q16236 605 aa21.64■■□□□ 1.05
RAB40C-205ENST00000539661 DCTPP1Q9H773 170 aa21.64■■□□□ 1.05
RAB40C-205ENST00000539661 STK26Q9P289 416 aa21.64■■□□□ 1.05
RAB40C-205ENST00000539661 ZKSCAN5Q9Y2L8 839 aa21.64■■□□□ 1.05
RAB40C-205ENST00000539661 ST18O60284 1047 aa21.63■■□□□ 1.05
RAB40C-205ENST00000539661 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.63■■□□□ 1.05
RAB40C-205ENST00000539661 ABCC3O15438 1527 aa21.63■■□□□ 1.05
RAB40C-205ENST00000539661 R3HCC1Q9Y3T6 440 aaKnown RBP21.63■■□□□ 1.05
RAB40C-205ENST00000539661 PRKAR2BP31323 418 aa21.62■■□□□ 1.05
RAB40C-205ENST00000539661 SIGLEC1Q9BZZ2 1709 aa21.62■■□□□ 1.05
RAB40C-205ENST00000539661 PRIM1P49642 420 aaKnown RBP21.62■■□□□ 1.05
RAB40C-205ENST00000539661 ZNF853P0CG23 659 aa21.61■■□□□ 1.05
RAB40C-205ENST00000539661 CASC1Q6TDU7 716 aa21.61■■□□□ 1.05
RAB40C-205ENST00000539661 LRSAM1Q6UWE0 723 aa21.61■■□□□ 1.05
RAB40C-205ENST00000539661 HDGFL2Q7Z4V5 671 aaPredicted RBP21.6■■□□□ 1.05
RAB40C-205ENST00000539661 CCDC39Q9UFE4 941 aa21.6■■□□□ 1.05
RAB40C-205ENST00000539661 KNDC1Q76NI1 1749 aa21.6■■□□□ 1.05
RAB40C-205ENST00000539661 PTPRMP28827 1452 aa21.59■■□□□ 1.05
RAB40C-205ENST00000539661 DYNC1I1O14576 645 aa21.59■■□□□ 1.05
RAB40C-205ENST00000539661 GPT2Q8TD30 523 aa21.59■■□□□ 1.05
RAB40C-205ENST00000539661 PRPF40AO75400 957 aaKnown RBP21.59■■□□□ 1.05
RAB40C-205ENST00000539661 TSPYL6Q8N831 410 aa21.59■■□□□ 1.05
RAB40C-205ENST00000539661 MBD3O95983 291 aa21.58■■□□□ 1.04
RAB40C-205ENST00000539661 PKP1Q13835 747 aa21.57■■□□□ 1.04
RAB40C-205ENST00000539661 TWISTNBQ3B726 338 aaPredicted RBP21.57■■□□□ 1.04
RAB40C-205ENST00000539661 UQCRHLA0A096LP55 91 aa21.57■■□□□ 1.04
RAB40C-205ENST00000539661 UQCRHP07919 91 aa21.57■■□□□ 1.04
RAB40C-205ENST00000539661 REC8O95072 547 aa21.56■■□□□ 1.04
RAB40C-205ENST00000539661 RBM10P98175 930 aaKnown RBP21.56■■□□□ 1.04
RAB40C-205ENST00000539661 MBIPQ9NS73 344 aa21.56■■□□□ 1.04
RAB40C-205ENST00000539661 ZDHHC9Q9Y397 364 aa21.56■■□□□ 1.04
RAB40C-205ENST00000539661 XPCQ01831 940 aaPredicted RBP21.56■■□□□ 1.04
RAB40C-205ENST00000539661 LMOD3Q0VAK6 560 aa21.56■■□□□ 1.04
RAB40C-205ENST00000539661 DIP2CQ9Y2E4 1556 aa21.56■■□□□ 1.04
RAB40C-205ENST00000539661 ANKRD44Q8N8A2 993 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms