RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 WNK3Q9BYP7 1800 aa18.19■□□□□ 0.5
CLSTN3-208ENST00000538933 SLC15A2Q16348 729 aa18.19■□□□□ 0.5
CLSTN3-208ENST00000538933 CDK19Q9BWU1 502 aa18.19■□□□□ 0.5
CLSTN3-208ENST00000538933 COL18A1P39060 1754 aa18.18■□□□□ 0.5
CLSTN3-208ENST00000538933 AKAP12Q02952 1782 aa18.18■□□□□ 0.5
CLSTN3-208ENST00000538933 DDB1Q16531 1140 aa18.18■□□□□ 0.5
CLSTN3-208ENST00000538933 TXNRD1Q16881 649 aa18.18■□□□□ 0.5
CLSTN3-208ENST00000538933 MTFR1LQ9H019 292 aa18.18■□□□□ 0.5
CLSTN3-208ENST00000538933 CCDC61Q9Y6R9 512 aa18.18■□□□□ 0.5
CLSTN3-208ENST00000538933 STK32BQ9NY57 414 aa18.16■□□□□ 0.5
CLSTN3-208ENST00000538933 MAP3K5Q99683 1374 aa18.16■□□□□ 0.5
CLSTN3-208ENST00000538933 RAB3GAP2Q9H2M9 1393 aa18.16■□□□□ 0.5
CLSTN3-208ENST00000538933 NLRP13Q86W25 1043 aa18.15■□□□□ 0.5
CLSTN3-208ENST00000538933 AATKQ6ZMQ8 1374 aa18.15■□□□□ 0.5
CLSTN3-208ENST00000538933 ARXQ96QS3 562 aa18.13■□□□□ 0.49
CLSTN3-208ENST00000538933 KDM2AQ9Y2K7 1162 aa18.13■□□□□ 0.49
CLSTN3-208ENST00000538933 DCAF11Q8TEB1 546 aa18.11■□□□□ 0.49
CLSTN3-208ENST00000538933 AXIN2Q9Y2T1 843 aa18.11■□□□□ 0.49
CLSTN3-208ENST00000538933 PAPPAQ13219 1627 aa18.11■□□□□ 0.49
CLSTN3-208ENST00000538933 RGPD5Q99666 1765 aa18.11■□□□□ 0.49
CLSTN3-208ENST00000538933 SHANK3Q9BYB0 1731 aa18.1■□□□□ 0.49
CLSTN3-208ENST00000538933 SLIT3O75094 1523 aa18.1■□□□□ 0.49
CLSTN3-208ENST00000538933 GIGYF1O75420 1035 aaPredicted RBP18.1■□□□□ 0.49
CLSTN3-208ENST00000538933 TOM1L2Q6ZVM7 507 aa18.1■□□□□ 0.49
CLSTN3-208ENST00000538933 COL24A1Q17RW2 1714 aa18.09■□□□□ 0.49
CLSTN3-208ENST00000538933 WDR17Q8IZU2 1322 aa18.09■□□□□ 0.49
CLSTN3-208ENST00000538933 CDCA7Q9BWT1 371 aaPredicted RBP18.09■□□□□ 0.49
CLSTN3-208ENST00000538933 STAC3Q96MF2 364 aa18.08■□□□□ 0.48
CLSTN3-208ENST00000538933 BRD4O60885 1362 aaPredicted RBP18.06■□□□□ 0.48
CLSTN3-208ENST00000538933 NHSQ6T4R5 1651 aa18.06■□□□□ 0.48
CLSTN3-208ENST00000538933 GPR162Q16538 588 aa18.06■□□□□ 0.48
CLSTN3-208ENST00000538933 ZBTB7CA1YPR0 619 aa18.05■□□□□ 0.48
CLSTN3-208ENST00000538933 PPIP5K1Q6PFW1 1433 aa18.05■□□□□ 0.48
CLSTN3-208ENST00000538933 PIK3C2AO00443 1686 aa18.04■□□□□ 0.48
CLSTN3-208ENST00000538933 NLRP6P59044 892 aa18.04■□□□□ 0.48
CLSTN3-208ENST00000538933 CARD10Q9BWT7 1032 aa18.04■□□□□ 0.48
CLSTN3-208ENST00000538933 ZNF827Q17R98 1081 aa18.03■□□□□ 0.48
CLSTN3-208ENST00000538933 EXOC5O00471 708 aa18.02■□□□□ 0.48
CLSTN3-208ENST00000538933 USP6P35125 1406 aa18.02■□□□□ 0.48
CLSTN3-208ENST00000538933 QSER1Q2KHR3 1735 aa18.02■□□□□ 0.48
CLSTN3-208ENST00000538933 ARHGEF25Q86VW2 580 aa18.02■□□□□ 0.48
CLSTN3-208ENST00000538933 BTAF1O14981 1849 aa18.02■□□□□ 0.47
CLSTN3-208ENST00000538933 LRRC4BQ9NT99 713 aa18.01■□□□□ 0.47
CLSTN3-208ENST00000538933 TRPM1Q7Z4N2 1603 aa18.01■□□□□ 0.47
CLSTN3-208ENST00000538933 CPSF1Q10570 1443 aaKnown RBP18■□□□□ 0.47
CLSTN3-208ENST00000538933 KIAA1210Q9ULL0 1709 aa17.99■□□□□ 0.47
CLSTN3-208ENST00000538933 CABP2Q9NPB3 220 aa17.99■□□□□ 0.47
CLSTN3-208ENST00000538933 KAT6BQ8WYB5 2073 aa17.99■□□□□ 0.47
CLSTN3-208ENST00000538933 TNS2Q63HR2 1409 aa17.98■□□□□ 0.47
CLSTN3-208ENST00000538933 AKT1S1Q96B36 256 aa17.98■□□□□ 0.47
CLSTN3-208ENST00000538933 CABP1Q9NZU7 370 aa17.98■□□□□ 0.47
CLSTN3-208ENST00000538933 SRPK2P78362 688 aaKnown RBP17.97■□□□□ 0.47
CLSTN3-208ENST00000538933 NLGN2Q8NFZ4 835 aa17.97■□□□□ 0.47
CLSTN3-208ENST00000538933 CCER1Q8TC90 406 aaPredicted RBP17.97■□□□□ 0.47
CLSTN3-208ENST00000538933 SLC16A10Q8TF71 515 aa17.97■□□□□ 0.47
CLSTN3-208ENST00000538933 ACSBG1Q96GR2 724 aa17.97■□□□□ 0.47
CLSTN3-208ENST00000538933 TUBGCP6Q96RT7 1819 aa17.97■□□□□ 0.47
CLSTN3-208ENST00000538933 CCDC7Q96M83 1385 aa17.95■□□□□ 0.46
CLSTN3-208ENST00000538933 ABCC6O95255 1503 aa17.95■□□□□ 0.46
CLSTN3-208ENST00000538933 YBX3P16989 372 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLSTN3-208ENST00000538933 NBPF1Q3BBV0 1214 aa17.95■□□□□ 0.46
CLSTN3-208ENST00000538933 QRICH2Q9H0J4 1663 aa17.93■□□□□ 0.46
CLSTN3-208ENST00000538933 NFAT5O94916 1531 aa17.93■□□□□ 0.46
CLSTN3-208ENST00000538933 CSB-PGBD3P0DP91 1061 aa17.93■□□□□ 0.46
CLSTN3-208ENST00000538933 PELP1Q8IZL8 1130 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-208ENST00000538933 PNPLA7Q6ZV29 1317 aa17.93■□□□□ 0.46
CLSTN3-208ENST00000538933 KCNH5Q8NCM2 988 aa17.92■□□□□ 0.46
CLSTN3-208ENST00000538933 POLD1P28340 1107 aa17.91■□□□□ 0.46
CLSTN3-208ENST00000538933 KLHL34Q8N239 644 aa17.91■□□□□ 0.46
CLSTN3-208ENST00000538933 ATP10DQ9P241 1426 aa17.9■□□□□ 0.46
CLSTN3-208ENST00000538933 GRIN3BO60391 1043 aa17.9■□□□□ 0.46
CLSTN3-208ENST00000538933 TTC21BQ7Z4L5 1316 aa17.9■□□□□ 0.46
CLSTN3-208ENST00000538933 CENPJQ9HC77 1338 aaPredicted RBP17.9■□□□□ 0.46
CLSTN3-208ENST00000538933 HSPA6P17066 643 aa17.89■□□□□ 0.45
CLSTN3-208ENST00000538933 SOX12O15370 315 aa17.87■□□□□ 0.45
CLSTN3-208ENST00000538933 SLC27A3Q5K4L6 730 aa17.87■□□□□ 0.45
CLSTN3-208ENST00000538933 LY75O60449 1722 aa17.86■□□□□ 0.45
CLSTN3-208ENST00000538933 ADCY9O60503 1353 aa17.85■□□□□ 0.45
CLSTN3-208ENST00000538933 IL2RBP14784 551 aa17.85■□□□□ 0.45
CLSTN3-208ENST00000538933 KCNQ4P56696 695 aa17.85■□□□□ 0.45
CLSTN3-208ENST00000538933 ZNF692Q9BU19 519 aaPredicted RBP17.85■□□□□ 0.45
CLSTN3-208ENST00000538933 ERBB3P21860 1342 aa17.84■□□□□ 0.45
CLSTN3-208ENST00000538933 TFCP2L1Q9NZI6 479 aa17.84■□□□□ 0.45
CLSTN3-208ENST00000538933 TTC21AQ8NDW8 1320 aa17.83■□□□□ 0.44
CLSTN3-208ENST00000538933 GPBP1L1Q9HC44 474 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-208ENST00000538933 NLRP2Q9NX02 1062 aa17.83■□□□□ 0.44
CLSTN3-208ENST00000538933 LTN1O94822 1766 aa17.82■□□□□ 0.44
CLSTN3-208ENST00000538933 USP54Q70EL1 1684 aa17.81■□□□□ 0.44
CLSTN3-208ENST00000538933 CLSPNQ9HAW4 1339 aa17.8■□□□□ 0.44
CLSTN3-208ENST00000538933 COL23A1Q86Y22 540 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-208ENST00000538933 NSD2O96028 1365 aa17.79■□□□□ 0.44
CLSTN3-208ENST00000538933 USP31Q70CQ4 1352 aa17.79■□□□□ 0.44
CLSTN3-208ENST00000538933 PCNTO95613 3336 aa17.78■□□□□ 0.44
CLSTN3-208ENST00000538933 MON2Q7Z3U7 1717 aa17.78■□□□□ 0.44
CLSTN3-208ENST00000538933 EVC2Q86UK5 1308 aa17.77■□□□□ 0.44
CLSTN3-208ENST00000538933 ANKRD24Q8TF21 1146 aa17.77■□□□□ 0.44
CLSTN3-208ENST00000538933 DOT1LQ8TEK3 1739 aa17.76■□□□□ 0.43
CLSTN3-208ENST00000538933 PRIM1P49642 420 aaKnown RBP17.76■□□□□ 0.43
CLSTN3-208ENST00000538933 DNAJC5GQ8N7S2 189 aa17.76■□□□□ 0.43
CLSTN3-208ENST00000538933 ZNF526Q8TF50 670 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms