RNA–Protein interactions for RNA: ENST00000502717.5

HMGXB3-201, Transcript of HMG-box containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGXB3, Length 4,974 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-201ENST00000502717 ATP10BO94823 1461 aa20.57■□□□□ 0.88
HMGXB3-201ENST00000502717 SF3B2Q13435 895 aaKnown RBP20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 BCL11BQ9C0K0 894 aaPredicted RBP20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 NSD3Q9BZ95 1437 aa20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 KRT85P78386 507 aa20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 TRIM27P14373 513 aa20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 SDF4Q9BRK5 362 aa20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 TNMDQ9H2S6 317 aa20.56■□□□□ 0.88
HMGXB3-201ENST00000502717 TSR1Q2NL82 804 aaKnown RBP20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 ZSCAN23Q3MJ62 389 aa20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 CCDC70Q6NSX1 233 aa20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 THEMISQ8N1K5 641 aaPredicted RBP20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 SRCIN1Q9C0H9 1055 aa20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 CPLX2Q6PUV4 134 aaKnown RBP20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 NOC3LQ8WTT2 800 aaKnown RBP20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 LRRCC1Q9C099 1032 aa20.55■□□□□ 0.88
HMGXB3-201ENST00000502717 PDIA4P13667 645 aaKnown RBP20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 HSP90B2PQ58FF3 399 aa20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 CCDC183Q5T5S1 534 aa20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 CD109Q6YHK3 1445 aa20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 ADGRL1O94910 1474 aa20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 TCOF1Q13428 1488 aaKnown RBP20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 HOOK1Q9UJC3 728 aaKnown RBP20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 KINO60870 393 aaKnown RBP20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 FCHSD2O94868 740 aa20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 G3BP1Q13283 466 aaKnown RBP eCLIP20.54■□□□□ 0.88
HMGXB3-201ENST00000502717 C1orf141Q5JVX7 400 aa20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 TBC1D9Q6ZT07 1266 aa20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 CCT4P50991 539 aaKnown RBP20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 PROSER2Q86WR7 435 aaPredicted RBP20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 NECTIN2Q92692 538 aa20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 PRAM1Q96QH2 718 aa20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 PLEKHH1Q9ULM0 1364 aa20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 SMC5Q8IY18 1101 aa20.53■□□□□ 0.88
HMGXB3-201ENST00000502717 SURF6O75683 361 aaKnown RBP20.52■□□□□ 0.88
HMGXB3-201ENST00000502717 SEC24BO95487 1268 aa20.52■□□□□ 0.88
HMGXB3-201ENST00000502717 CREBRFQ8IUR6 639 aa20.52■□□□□ 0.88
HMGXB3-201ENST00000502717 KIAA0556O60303 1618 aa20.52■□□□□ 0.87
HMGXB3-201ENST00000502717 UVSSAQ2YD98 709 aa20.52■□□□□ 0.87
HMGXB3-201ENST00000502717 FBXW7Q969H0 707 aa20.52■□□□□ 0.87
HMGXB3-201ENST00000502717 ZKSCAN5Q9Y2L8 839 aa20.52■□□□□ 0.87
HMGXB3-201ENST00000502717 CYP46A1Q9Y6A2 500 aa20.52■□□□□ 0.87
HMGXB3-201ENST00000502717 EIF2S2P20042 333 aaKnown RBP20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 LRSAM1Q6UWE0 723 aa20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 CLASRPQ8N2M8 674 aaKnown RBP20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 RAB3GAP1Q15042 981 aa20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 LRRFIP1Q32MZ4 808 aaKnown RBP20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 NUP62CLQ9H1M0 184 aa20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 CPLX1O14810 134 aa20.51■□□□□ 0.87
HMGXB3-201ENST00000502717 WDR62O43379 1518 aa20.5■□□□□ 0.87
HMGXB3-201ENST00000502717 ZSCAN31Q96LW9 406 aaPredicted RBP20.5■□□□□ 0.87
HMGXB3-201ENST00000502717 ITSN2Q9NZM3 1697 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 HIP1O00291 1037 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 SYNE3Q6ZMZ3 975 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 TEFQ10587 303 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 NUCB1Q02818 461 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 CCDC30Q5VVM6 783 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 USP25Q9UHP3 1055 aa20.49■□□□□ 0.87
HMGXB3-201ENST00000502717 ZHX1Q9UKY1 873 aaPredicted RBP20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 INSRP06213 1382 aa20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 SLC4A2P04920 1241 aa20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 NEXNQ0ZGT2 675 aa20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 MAP3K11Q16584 847 aa20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 ANKRD1Q15327 319 aa20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 PPP4R3BQ5MIZ7 849 aa20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 LARP1BQ659C4 914 aaKnown RBP20.48■□□□□ 0.87
HMGXB3-201ENST00000502717 TXNDC2Q86VQ3 553 aa20.47■□□□□ 0.87
HMGXB3-201ENST00000502717 SMC2O95347 1197 aa20.47■□□□□ 0.87
HMGXB3-201ENST00000502717 TRIM29Q14134 588 aa20.47■□□□□ 0.87
HMGXB3-201ENST00000502717 KIF21AQ7Z4S6 1674 aa20.47■□□□□ 0.87
HMGXB3-201ENST00000502717 AK7Q96M32 723 aa20.47■□□□□ 0.87
HMGXB3-201ENST00000502717 CGNQ9P2M7 1197 aaKnown RBP20.46■□□□□ 0.87
HMGXB3-201ENST00000502717 KIF2AO00139 706 aaPredicted RBP20.46■□□□□ 0.87
HMGXB3-201ENST00000502717 NFE2L2Q16236 605 aa20.46■□□□□ 0.87
HMGXB3-201ENST00000502717 SCAF11Q99590 1463 aaKnown RBP20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 OLFM4Q6UX06 510 aa20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 ANKRD20A12PQ8NF67 263 aa20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 SYTL4Q96C24 671 aaPredicted RBP20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 ZNF396Q96N95 335 aaPredicted RBP20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 FANCAO15360 1455 aa20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 IPO7O95373 1038 aaKnown RBP20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 KLHL34Q8N239 644 aa20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 RASSF8Q8NHQ8 419 aa20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 RBM27Q9P2N5 1060 aaKnown RBP20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 LEKR1Q6ZMV7 388 aa20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 ERCC4Q92889 916 aaPredicted RBP20.45■□□□□ 0.86
HMGXB3-201ENST00000502717 DDX58O95786 925 aaKnown RBP20.44■□□□□ 0.86
HMGXB3-201ENST00000502717 TTC5Q8N0Z6 440 aa20.44■□□□□ 0.86
HMGXB3-201ENST00000502717 PER1O15534 1290 aaPredicted RBP20.44■□□□□ 0.86
HMGXB3-201ENST00000502717 ADCY5O95622 1261 aa20.44■□□□□ 0.86
HMGXB3-201ENST00000502717 SPATA32Q96LK8 384 aa20.44■□□□□ 0.86
HMGXB3-201ENST00000502717 PES1O00541 588 aaKnown RBP20.43■□□□□ 0.86
HMGXB3-201ENST00000502717 PLCH2O75038 1416 aa20.43■□□□□ 0.86
HMGXB3-201ENST00000502717 TERF1P54274 439 aa20.43■□□□□ 0.86
HMGXB3-201ENST00000502717 PPP6R1Q9UPN7 881 aa20.43■□□□□ 0.86
HMGXB3-201ENST00000502717 ATAD2Q6PL18 1390 aa20.43■□□□□ 0.86
HMGXB3-201ENST00000502717 CDK19Q9BWU1 502 aa20.43■□□□□ 0.86
HMGXB3-201ENST00000502717 ASXL1Q8IXJ9 1541 aa20.42■□□□□ 0.86
HMGXB3-201ENST00000502717 ABCA5Q8WWZ7 1642 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms