RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 TWISTNBQ3B726 338 aaPredicted RBP16.32■□□□□ 0.2
PTPN7-217ENST00000495688 TXNDC2Q86VQ3 553 aa16.32■□□□□ 0.2
PTPN7-217ENST00000495688 ATP7BP35670 1465 aa16.32■□□□□ 0.2
PTPN7-217ENST00000495688 BMP2KLQ5H9B9 411 aa16.32■□□□□ 0.2
PTPN7-217ENST00000495688 CYB5RLQ6IPT4 315 aa16.32■□□□□ 0.2
PTPN7-217ENST00000495688 IFT57Q9NWB7 429 aa16.32■□□□□ 0.2
PTPN7-217ENST00000495688 A2ML1A8K2U0 1454 aa16.31■□□□□ 0.2
PTPN7-217ENST00000495688 CD2BP2O95400 341 aaKnown RBP16.31■□□□□ 0.2
PTPN7-217ENST00000495688 ZNF853P0CG23 659 aa16.31■□□□□ 0.2
PTPN7-217ENST00000495688 ZNF428Q96B54 188 aa16.31■□□□□ 0.2
PTPN7-217ENST00000495688 WASLO00401 505 aaPredicted RBP16.31■□□□□ 0.2
PTPN7-217ENST00000495688 TRAK2O60296 914 aa16.31■□□□□ 0.2
PTPN7-217ENST00000495688 KIF2CQ99661 725 aa16.31■□□□□ 0.2
PTPN7-217ENST00000495688 PTCH1Q13635 1447 aa16.3■□□□□ 0.2
PTPN7-217ENST00000495688 XRCC6P12956 609 aaKnown RBP eCLIP16.3■□□□□ 0.2
PTPN7-217ENST00000495688 PANK2Q9BZ23 570 aa16.3■□□□□ 0.2
PTPN7-217ENST00000495688 RIMS2Q9UQ26 1411 aa16.3■□□□□ 0.2
PTPN7-217ENST00000495688 CPSF1Q10570 1443 aaKnown RBP16.3■□□□□ 0.2
PTPN7-217ENST00000495688 TBC1D9Q6ZT07 1266 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 ARHGAP45Q92619 1136 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 GCC1Q96CN9 775 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 RBM42Q9BTD8 480 aaKnown RBP16.29■□□□□ 0.2
PTPN7-217ENST00000495688 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 ABCC4O15439 1325 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 METP08581 1390 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 FAM43AQ8N2R8 423 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 PIK3R4Q99570 1358 aa16.29■□□□□ 0.2
PTPN7-217ENST00000495688 DLG5Q8TDM6 1919 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 EDC4Q6P2E9 1401 aaKnown RBP16.28■□□□□ 0.2
PTPN7-217ENST00000495688 DDIT3P35638 169 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 FAM69CQ0P6D2 419 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 KRT24Q2M2I5 525 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 L1TD1Q5T7N2 865 aaKnown RBP16.28■□□□□ 0.2
PTPN7-217ENST00000495688 NUDT16Q96DE0 195 aaKnown RBP16.28■□□□□ 0.2
PTPN7-217ENST00000495688 CFAP44Q96MT7 982 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 RIMBP3CA6NJZ7 1639 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 RIMBP3BA6NNM3 1639 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 RIMBP3Q9UFD9 1639 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 CPS1P31327 1500 aa16.28■□□□□ 0.2
PTPN7-217ENST00000495688 CALD1Q05682 793 aaKnown RBP16.28■□□□□ 0.2
PTPN7-217ENST00000495688 NCOA3Q9Y6Q9 1424 aa16.27■□□□□ 0.2
PTPN7-217ENST00000495688 SETD1AO15047 1707 aaKnown RBP16.27■□□□□ 0.2
PTPN7-217ENST00000495688 GOLGA6L3A6NEY3 463 aa16.27■□□□□ 0.2
PTPN7-217ENST00000495688 AEBP1Q8IUX7 1158 aa16.27■□□□□ 0.2
PTPN7-217ENST00000495688 COG3Q96JB2 828 aa16.27■□□□□ 0.2
PTPN7-217ENST00000495688 FSD2A1L4K1 749 aa16.27■□□□□ 0.19
PTPN7-217ENST00000495688 DLC1Q96QB1 1528 aa16.27■□□□□ 0.19
PTPN7-217ENST00000495688 HSP90AB1P08238 724 aaKnown RBP16.26■□□□□ 0.19
PTPN7-217ENST00000495688 SNX21Q969T3 373 aa16.26■□□□□ 0.19
PTPN7-217ENST00000495688 RRAGDQ9NQL2 400 aaPredicted RBP16.26■□□□□ 0.19
PTPN7-217ENST00000495688 CDK12Q9NYV4 1490 aaPredicted RBP16.26■□□□□ 0.19
PTPN7-217ENST00000495688 TNPO1Q92973 898 aaKnown RBP16.25■□□□□ 0.19
PTPN7-217ENST00000495688 TSPOAP1O95153 1857 aa16.24■□□□□ 0.19
PTPN7-217ENST00000495688 GSPT1P15170 499 aaKnown RBP16.24■□□□□ 0.19
PTPN7-217ENST00000495688 C16orf71Q8IYS4 520 aaPredicted RBP16.24■□□□□ 0.19
PTPN7-217ENST00000495688 CCDC61Q9Y6R9 512 aa16.24■□□□□ 0.19
PTPN7-217ENST00000495688 NUTM2FA1L443 756 aa16.23■□□□□ 0.19
PTPN7-217ENST00000495688 AATKQ6ZMQ8 1374 aa16.23■□□□□ 0.19
PTPN7-217ENST00000495688 KNDC1Q76NI1 1749 aa16.23■□□□□ 0.19
PTPN7-217ENST00000495688 SULT6B1Q6IMI4 303 aa16.22■□□□□ 0.19
PTPN7-217ENST00000495688 CHMP4BQ9H444 224 aaKnown RBP16.22■□□□□ 0.19
PTPN7-217ENST00000495688 NRXN3Q9Y4C0 1643 aa16.22■□□□□ 0.19
PTPN7-217ENST00000495688 PRR36Q9H6K5 1346 aa16.22■□□□□ 0.19
PTPN7-217ENST00000495688 API5Q9BZZ5 524 aaKnown RBP16.22■□□□□ 0.19
PTPN7-217ENST00000495688 HSP90AA1P07900 732 aaKnown RBP16.22■□□□□ 0.19
PTPN7-217ENST00000495688 LMOD3Q0VAK6 560 aa16.22■□□□□ 0.19
PTPN7-217ENST00000495688 MCM10Q7L590 875 aa16.22■□□□□ 0.19
PTPN7-217ENST00000495688 DDX11L8A8MPP1 907 aa16.21■□□□□ 0.19
PTPN7-217ENST00000495688 PLEKHM2Q8IWE5 1019 aa16.21■□□□□ 0.19
PTPN7-217ENST00000495688 OTUD7AQ8TE49 926 aaPredicted RBP16.21■□□□□ 0.19
PTPN7-217ENST00000495688 APBB1O00213 710 aa16.21■□□□□ 0.18
PTPN7-217ENST00000495688 SOX12O15370 315 aa16.21■□□□□ 0.18
PTPN7-217ENST00000495688 EIF4A2Q14240 407 aaKnown RBP16.21■□□□□ 0.18
PTPN7-217ENST00000495688 SPATA31D1Q6ZQQ2 1576 aa16.2■□□□□ 0.18
PTPN7-217ENST00000495688 EIF5BO60841 1220 aaKnown RBP16.2■□□□□ 0.18
PTPN7-217ENST00000495688 K7ELQ4 463 aaPredicted RBP16.19■□□□□ 0.18
PTPN7-217ENST00000495688 CDC45O75419 566 aa16.19■□□□□ 0.18
PTPN7-217ENST00000495688 RAB3GAP1Q15042 981 aa16.19■□□□□ 0.18
PTPN7-217ENST00000495688 GAS2L2Q8NHY3 880 aa16.19■□□□□ 0.18
PTPN7-217ENST00000495688 DCTPP1Q9H773 170 aa16.19■□□□□ 0.18
PTPN7-217ENST00000495688 SMARCA5O60264 1052 aaPredicted RBP16.18■□□□□ 0.18
PTPN7-217ENST00000495688 MIS18AQ9NYP9 233 aa16.18■□□□□ 0.18
PTPN7-217ENST00000495688 HSP90AB2PQ58FF8 381 aa16.17■□□□□ 0.18
PTPN7-217ENST00000495688 MON2Q7Z3U7 1717 aa16.17■□□□□ 0.18
PTPN7-217ENST00000495688 INTS3Q68E01 1043 aaKnown RBP16.17■□□□□ 0.18
PTPN7-217ENST00000495688 RGS12O14924 1447 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 SSFA2P28290 1259 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 CIZ1Q9ULV3 898 aaPredicted RBP16.16■□□□□ 0.18
PTPN7-217ENST00000495688 ATP10DQ9P241 1426 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 GAS2L3Q86XJ1 694 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 MEIS3Q99687 375 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 GRPEL1Q9HAV7 217 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 PPP6R1Q9UPN7 881 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 AK9Q5TCS8 1911 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 C3P01024 1663 aa16.16■□□□□ 0.18
PTPN7-217ENST00000495688 MSH6P52701 1360 aa16.15■□□□□ 0.18
PTPN7-217ENST00000495688 TTC22Q5TAA0 569 aa16.15■□□□□ 0.18
PTPN7-217ENST00000495688 CHL1O00533 1208 aa16.15■□□□□ 0.18
PTPN7-217ENST00000495688 MRE11P49959 708 aa16.15■□□□□ 0.18
PTPN7-217ENST00000495688 CEP85Q6P2H3 762 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms