RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 NYAP1Q6ZVC0 841 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 SH3BP5LQ7L8J4 393 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 RNF135Q8IUD6 432 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 PLPP7Q8NBV4 271 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 PCDHB9Q9Y5E1 797 aa8.85□□□□□ -0.99
UPF3B-203ENST00000478840 ADH1BP00325 375 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 FAM69CQ0P6D2 419 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 NCOA4Q13772 614 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 CRTC2Q53ET0 693 aaPredicted RBP8.84□□□□□ -0.99
UPF3B-203ENST00000478840 PHLDB3Q6NSJ2 640 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 TRAF7Q6Q0C0 670 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 TXNDC2Q86VQ3 553 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 ADAM32Q8TC27 787 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 PRDM9Q9NQV7 894 aa8.84□□□□□ -0.99
UPF3B-203ENST00000478840 ZPR1O75312 459 aa8.83□□□□□ -1
UPF3B-203ENST00000478840 CCDC27Q2M243 656 aa8.83□□□□□ -1
UPF3B-203ENST00000478840 LARP1Q6PKG0 1096 aaKnown RBP8.83□□□□□ -1
UPF3B-203ENST00000478840 DEPDC4Q8N2C3 294 aa8.83□□□□□ -1
UPF3B-203ENST00000478840 ARHGAP9Q9BRR9 750 aa8.83□□□□□ -1
UPF3B-203ENST00000478840 CDCA7Q9BWT1 371 aaPredicted RBP8.83□□□□□ -1
UPF3B-203ENST00000478840 SH3RF1Q7Z6J0 888 aa8.82□□□□□ -1
UPF3B-203ENST00000478840 CLP1Q92989 425 aaKnown RBP8.82□□□□□ -1
UPF3B-203ENST00000478840 UNC93B1Q9H1C4 597 aa8.82□□□□□ -1
UPF3B-203ENST00000478840 AMOTL2Q9Y2J4 779 aa8.82□□□□□ -1
UPF3B-203ENST00000478840 RASA1P20936 1047 aa8.81□□□□□ -1
UPF3B-203ENST00000478840 SSFA2P28290 1259 aa8.81□□□□□ -1
UPF3B-203ENST00000478840 COPS2P61201 443 aa8.81□□□□□ -1
UPF3B-203ENST00000478840 CCER1Q8TC90 406 aaPredicted RBP8.81□□□□□ -1
UPF3B-203ENST00000478840 FAM200AQ8TCP9 573 aa8.81□□□□□ -1
UPF3B-203ENST00000478840 SWI5Q1ZZU3 235 aa8.8□□□□□ -1
UPF3B-203ENST00000478840 EML3Q32P44 896 aa8.8□□□□□ -1
UPF3B-203ENST00000478840 FOXD4L5Q5VV16 416 aaPredicted RBP8.8□□□□□ -1
UPF3B-203ENST00000478840 PTCRAQ6ISU1 281 aaPredicted RBP8.8□□□□□ -1
UPF3B-203ENST00000478840 ZBTB33Q86T24 672 aa8.8□□□□□ -1
UPF3B-203ENST00000478840 ANKMY2Q8IV38 441 aa8.8□□□□□ -1
UPF3B-203ENST00000478840 FOXD4L4Q8WXT5 416 aaPredicted RBP8.8□□□□□ -1
UPF3B-203ENST00000478840 SLAIN2Q9P270 581 aa8.8□□□□□ -1
UPF3B-203ENST00000478840 TRIM50Q86XT4 487 aa8.79□□□□□ -1
UPF3B-203ENST00000478840 TLL1O43897 1013 aa8.78□□□□□ -1
UPF3B-203ENST00000478840 ARID4AP29374 1257 aaPredicted RBP8.78□□□□□ -1
UPF3B-203ENST00000478840 OGFOD1Q8N543 542 aa8.78□□□□□ -1
UPF3B-203ENST00000478840 DKK1O94907 266 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 ATP1A2P50993 1020 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 CLDN10P78369 228 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 LARGE2Q8N3Y3 721 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 MTRQ99707 1265 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 PLA2G2EQ9NZK7 142 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 NOD1Q9Y239 953 aa8.77□□□□□ -1.01
UPF3B-203ENST00000478840 TSGA10IPQ3SY00 556 aa8.76□□□□□ -1.01
UPF3B-203ENST00000478840 DZIP3Q86Y13 1208 aaKnown RBP8.76□□□□□ -1.01
UPF3B-203ENST00000478840 SIX5Q8N196 739 aa8.76□□□□□ -1.01
UPF3B-203ENST00000478840 C1orf216Q8TAB5 229 aa8.76□□□□□ -1.01
UPF3B-203ENST00000478840 CCDC85AQ96PX6 553 aaPredicted RBP8.76□□□□□ -1.01
UPF3B-203ENST00000478840 SLC6A16Q9GZN6 736 aa8.76□□□□□ -1.01
UPF3B-203ENST00000478840 DPYDQ12882 1025 aa8.75□□□□□ -1.01
UPF3B-203ENST00000478840 ERFEQ4G0M1 354 aa8.75□□□□□ -1.01
UPF3B-203ENST00000478840 TJAP1Q5JTD0 557 aa8.75□□□□□ -1.01
UPF3B-203ENST00000478840 BPHLQ86WA6 291 aaPredicted RBP8.75□□□□□ -1.01
UPF3B-203ENST00000478840 CCDC125Q86Z20 511 aa8.75□□□□□ -1.01
UPF3B-203ENST00000478840 DNAAF2Q9NVR5 837 aaKnown RBP8.75□□□□□ -1.01
UPF3B-203ENST00000478840 ZBTB7BO15156 539 aaPredicted RBP8.74□□□□□ -1.01
UPF3B-203ENST00000478840 RNF20Q5VTR2 975 aa8.74□□□□□ -1.01
UPF3B-203ENST00000478840 CCDC24Q8N4L8 307 aa8.74□□□□□ -1.01
UPF3B-203ENST00000478840 C1QTNF2Q9BXJ5 285 aa8.74□□□□□ -1.01
UPF3B-203ENST00000478840 IL21Q9HBE4 155 aa8.74□□□□□ -1.01
UPF3B-203ENST00000478840 DOLKQ9UPQ8 538 aa8.74□□□□□ -1.01
UPF3B-203ENST00000478840 ATP2B4P23634 1241 aa8.73□□□□□ -1.01
UPF3B-203ENST00000478840 ZNF511Q8NB15 262 aa8.73□□□□□ -1.01
UPF3B-203ENST00000478840 ESPNB1AK53 854 aa8.72□□□□□ -1.01
UPF3B-203ENST00000478840 GIGYF1O75420 1035 aaPredicted RBP8.72□□□□□ -1.01
UPF3B-203ENST00000478840 RBM25P49756 843 aaKnown RBP8.72□□□□□ -1.01
UPF3B-203ENST00000478840 C4orf48Q5BLP8 95 aa8.72□□□□□ -1.01
UPF3B-203ENST00000478840 SEPT12Q8IYM1 358 aa8.72□□□□□ -1.01
UPF3B-203ENST00000478840 BAP1Q92560 729 aa8.72□□□□□ -1.01
UPF3B-203ENST00000478840 ZNF428Q96B54 188 aa8.72□□□□□ -1.01
UPF3B-203ENST00000478840 MAGEB6P1A0A0J9YX57 407 aa8.71□□□□□ -1.02
UPF3B-203ENST00000478840 IFFO2Q5TF58 517 aa8.71□□□□□ -1.02
UPF3B-203ENST00000478840 TRMT44Q8IYL2 757 aaKnown RBP8.71□□□□□ -1.02
UPF3B-203ENST00000478840 ZNF516Q92618 1163 aa8.71□□□□□ -1.02
UPF3B-203ENST00000478840 FOXJ1Q92949 421 aa8.71□□□□□ -1.02
UPF3B-203ENST00000478840 ZNF594Q96JF6 807 aaPredicted RBP8.71□□□□□ -1.02
UPF3B-203ENST00000478840 CARD14Q9BXL6 1004 aa8.71□□□□□ -1.02
UPF3B-203ENST00000478840 CDV3Q9UKY7 258 aaKnown RBP8.71□□□□□ -1.02
UPF3B-203ENST00000478840 KIAA1024Q9UPX6 916 aa8.71□□□□□ -1.02
UPF3B-203ENST00000478840 SOWAHDA6NJG2 315 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 ERCC3P19447 782 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 SEC13P55735 322 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 GTF2IP78347 998 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 NBPF20Q3BBV1 942 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 SIRT1Q96EB6 747 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 PCDHGA11Q9Y5H2 935 aa8.7□□□□□ -1.02
UPF3B-203ENST00000478840 OCLNQ16625 522 aa8.69□□□□□ -1.02
UPF3B-203ENST00000478840 TAS1R3Q7RTX0 852 aa8.69□□□□□ -1.02
UPF3B-203ENST00000478840 SLC10A4Q96EP9 437 aa8.69□□□□□ -1.02
UPF3B-203ENST00000478840 E9PSI1 815 aa8.68□□□□□ -1.02
UPF3B-203ENST00000478840 USP4Q13107 963 aa8.68□□□□□ -1.02
UPF3B-203ENST00000478840 OXLD1Q5BKU9 147 aa8.68□□□□□ -1.02
UPF3B-203ENST00000478840 CCDC102BQ68D86 513 aa8.68□□□□□ -1.02
UPF3B-203ENST00000478840 DNAJC14Q6Y2X3 702 aaPredicted RBP8.68□□□□□ -1.02
UPF3B-203ENST00000478840 FCF1Q9Y324 198 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms