RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 TPRNQ4KMQ1 711 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 TIGD1Q96MW7 591 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 LARP6Q9BRS8 491 aaKnown RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 PCDHB15Q9Y5E8 787 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS50-210ENST00000471188 DENND4BO75064 1496 aaPredicted RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 CARMIL1Q5VZK9 1371 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 PRPF40AO75400 957 aaKnown RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 SMC5Q8IY18 1101 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 RYDENQ9NUL5 291 aaKnown RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 TEX14Q8IWB6 1497 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 POTEB3A0JP26 581 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 ZNF445P59923 1031 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 PDE3AQ14432 1141 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 FOXD4L5Q5VV16 416 aaPredicted RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 POTEBQ6S5H4 581 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 TEX2Q8IWB9 1127 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 FOXD4L4Q8WXT5 416 aaPredicted RBP5.19□□□□□ -1.58
VPS50-210ENST00000471188 PDLIM2Q96JY6 352 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 UGGT2Q9NYU1 1516 aa5.19□□□□□ -1.58
VPS50-210ENST00000471188 PARD3Q8TEW0 1356 aa5.18□□□□□ -1.58
VPS50-210ENST00000471188 APPP05067 770 aa5.18□□□□□ -1.58
VPS50-210ENST00000471188 NOLC1Q14978 699 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS50-210ENST00000471188 VIRMAQ69YN4 1812 aaKnown RBP5.18□□□□□ -1.58
VPS50-210ENST00000471188 PLEKHH2Q8IVE3 1493 aa5.18□□□□□ -1.58
VPS50-210ENST00000471188 HOXB1P14653 301 aaPredicted RBP5.18□□□□□ -1.58
VPS50-210ENST00000471188 TTC12Q9H892 705 aaPredicted RBP5.18□□□□□ -1.58
VPS50-210ENST00000471188 ZMYM4Q5VZL5 1548 aa5.18□□□□□ -1.58
VPS50-210ENST00000471188 KIAA0586Q9BVV6 1533 aa5.18□□□□□ -1.58
VPS50-210ENST00000471188 K7ELQ4 463 aaPredicted RBP5.17□□□□□ -1.58
VPS50-210ENST00000471188 RBM25P49756 843 aaKnown RBP5.17□□□□□ -1.58
VPS50-210ENST00000471188 CHMP4CQ96CF2 233 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 BLMP54132 1417 aaPredicted RBP5.17□□□□□ -1.58
VPS50-210ENST00000471188 ADAMTSL3P82987 1691 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 BRD2P25440 801 aaKnown RBP5.17□□□□□ -1.58
VPS50-210ENST00000471188 RGS22Q8NE09 1264 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 DIAPH3Q9NSV4 1193 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 TNNQ9UQP3 1299 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 AXIN2Q9Y2T1 843 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 ZCCHC11Q5TAX3 1644 aaKnown RBP5.17□□□□□ -1.58
VPS50-210ENST00000471188 HECW1Q76N89 1606 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 GPR153Q6NV75 609 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 GAS2L2Q8NHY3 880 aa5.17□□□□□ -1.58
VPS50-210ENST00000471188 IBTKQ9P2D0 1353 aaPredicted RBP5.17□□□□□ -1.58
VPS50-210ENST00000471188 CD2BP2O95400 341 aaKnown RBP5.16□□□□□ -1.58
VPS50-210ENST00000471188 IGF1RP08069 1367 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 SAMD9Q5K651 1589 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 FRMPD1Q5SYB0 1578 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 SNX21Q969T3 373 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 FYCO1Q9BQS8 1478 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 GPHNQ9NQX3 736 aaPredicted RBP5.16□□□□□ -1.58
VPS50-210ENST00000471188 OGFRQ9NZT2 677 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 KDM6BO15054 1643 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 ABCA8O94911 1581 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 NKTRP30414 1462 aaKnown RBP5.16□□□□□ -1.58
VPS50-210ENST00000471188 CASKIN1Q8WXD9 1431 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 DDIT3P35638 169 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 LRSAM1Q6UWE0 723 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 PIBF1Q8WXW3 757 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 FEZ1Q99689 392 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 CALCOCO1Q9P1Z2 691 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 KNSTRNQ9Y448 316 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 AK9Q5TCS8 1911 aa5.16□□□□□ -1.58
VPS50-210ENST00000471188 KIF3CO14782 793 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 FOXD4L6Q3SYB3 417 aaPredicted RBP5.15□□□□□ -1.58
VPS50-210ENST00000471188 FOXD4L3Q6VB84 417 aaPredicted RBP5.15□□□□□ -1.58
VPS50-210ENST00000471188 ANKRD13DQ6ZTN6 518 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 ABCC2Q92887 1545 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 PER1O15534 1290 aaPredicted RBP5.15□□□□□ -1.58
VPS50-210ENST00000471188 RLBP1P12271 317 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 NUCB2P80303 420 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 GABPB1Q06547 395 aaPredicted RBP5.15□□□□□ -1.58
VPS50-210ENST00000471188 CADPS2Q86UW7 1296 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 LNPKQ9C0E8 428 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 ZSWIM6Q9HCJ5 1215 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 LMBRD1Q9NUN5 540 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 USP25Q9UHP3 1055 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 KIAA0556O60303 1618 aa5.15□□□□□ -1.58
VPS50-210ENST00000471188 PPP1R15BQ5SWA1 713 aa5.15□□□□□ -1.59
VPS50-210ENST00000471188 CHAMP1Q96JM3 812 aa5.15□□□□□ -1.59
VPS50-210ENST00000471188 TMX1Q9H3N1 280 aa5.15□□□□□ -1.59
VPS50-210ENST00000471188 TMEM63CQ9P1W3 806 aa5.15□□□□□ -1.59
VPS50-210ENST00000471188 PCDHGA4Q9Y5G9 962 aa5.15□□□□□ -1.59
VPS50-210ENST00000471188 KIF16BQ96L93 1317 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 GTF2F1P35269 517 aaKnown RBP eCLIP5.14□□□□□ -1.59
VPS50-210ENST00000471188 RGL3Q3MIN7 710 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 TSPY26PQ9H489 355 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 PPP2R1AP30153 589 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 PKP1Q13835 747 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 LHX6Q9UPM6 363 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 HDAC5Q9UQL6 1122 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 NCKAP5LQ9HCH0 1330 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 SLFN14P0C7P3 912 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 FOXK1P85037 733 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 GPT2Q8TD30 523 aa5.14□□□□□ -1.59
VPS50-210ENST00000471188 RRP7AQ9Y3A4 280 aaKnown RBP5.14□□□□□ -1.59
VPS50-210ENST00000471188 ABCA9Q8IUA7 1624 aa5.13□□□□□ -1.59
VPS50-210ENST00000471188 NCOA3Q9Y6Q9 1424 aa5.13□□□□□ -1.59
VPS50-210ENST00000471188 KDM5CP41229 1560 aa5.13□□□□□ -1.59
VPS50-210ENST00000471188 ZNF521Q96K83 1311 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms