RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 AEBP2Q6ZN18 517 aaPredicted RBP11.58□□□□□ -0.56
VPS50-210ENST00000471188 CHIC1Q5VXU3 224 aa11.08□□□□□ -0.64
VPS50-210ENST00000471188 SENP3Q9H4L4 574 aaPredicted RBP10.07□□□□□ -0.8
VPS50-210ENST00000471188 PHF23Q9BUL5 403 aaPredicted RBP9.79□□□□□ -0.84
VPS50-210ENST00000471188 FOXD1Q16676 465 aa9.24□□□□□ -0.93
VPS50-210ENST00000471188 MSH5O43196 834 aa8.95□□□□□ -0.98
VPS50-210ENST00000471188 PLPPR3Q6T4P5 718 aa8.95□□□□□ -0.98
VPS50-210ENST00000471188 POTEDQ86YR6 584 aa8.93□□□□□ -0.98
VPS50-210ENST00000471188 ADRA2BP18089 450 aa8.77□□□□□ -1.01
VPS50-210ENST00000471188 PPP6R1Q9UPN7 881 aa8.75□□□□□ -1.01
VPS50-210ENST00000471188 PIAS4Q8N2W9 510 aaPredicted RBP8.68□□□□□ -1.02
VPS50-210ENST00000471188 MAPK8IP2Q13387 824 aaPredicted RBP8.02□□□□□ -1.13
VPS50-210ENST00000471188 SCAF1Q9H7N4 1312 aaKnown RBP7.97□□□□□ -1.13
VPS50-210ENST00000471188 PPP4R3CPQ6ZMV5 832 aa7.91□□□□□ -1.14
VPS50-210ENST00000471188 DMRT2Q9Y5R5 561 aa7.9□□□□□ -1.14
VPS50-210ENST00000471188 DCAF8L1A6NGE4 600 aa7.74□□□□□ -1.17
VPS50-210ENST00000471188 CACNB1Q02641 598 aaPredicted RBP7.74□□□□□ -1.17
VPS50-210ENST00000471188 CNKSR2Q8WXI2 1034 aa7.66□□□□□ -1.18
VPS50-210ENST00000471188 NCBP3Q53F19 620 aaKnown RBP7.61□□□□□ -1.19
VPS50-210ENST00000471188 KCNA4P22459 653 aa7.6□□□□□ -1.19
VPS50-210ENST00000471188 NPM3O75607 178 aaKnown RBP7.53□□□□□ -1.2
VPS50-210ENST00000471188 HOXD11P31277 338 aaPredicted RBP7.53□□□□□ -1.2
VPS50-210ENST00000471188 RNF216Q9NWF9 866 aaPredicted RBP7.52□□□□□ -1.21
VPS50-210ENST00000471188 NISCHQ9Y2I1 1504 aa7.51□□□□□ -1.21
VPS50-210ENST00000471188 RNF39Q9H2S5 420 aa7.49□□□□□ -1.21
VPS50-210ENST00000471188 DNAJC5BQ9UF47 199 aa7.49□□□□□ -1.21
VPS50-210ENST00000471188 C1QBPQ07021 282 aaKnown RBP7.49□□□□□ -1.21
VPS50-210ENST00000471188 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS50-210ENST00000471188 PELP1Q8IZL8 1130 aaKnown RBP7.23□□□□□ -1.25
VPS50-210ENST00000471188 SLC4A1APQ9BWU0 796 aaKnown RBP7.19□□□□□ -1.26
VPS50-210ENST00000471188 SLC4A2P04920 1241 aa7.14□□□□□ -1.27
VPS50-210ENST00000471188 CCDC180Q9P1Z9 1646 aa7.14□□□□□ -1.27
VPS50-210ENST00000471188 HRCP23327 699 aa7.14□□□□□ -1.27
VPS50-210ENST00000471188 U3KPZ7 1027 aaPredicted RBP7.12□□□□□ -1.27
VPS50-210ENST00000471188 CAPN15O75808 1086 aa7.08□□□□□ -1.28
VPS50-210ENST00000471188 SPINK5Q9NQ38 1064 aaPredicted RBP7.06□□□□□ -1.28
VPS50-210ENST00000471188 PPARGC1BQ86YN6 1023 aaKnown RBP7.06□□□□□ -1.28
VPS50-210ENST00000471188 APLP2Q06481 763 aa7.04□□□□□ -1.28
VPS50-210ENST00000471188 TRHP20396 242 aaPredicted RBP7.04□□□□□ -1.28
VPS50-210ENST00000471188 MYT1Q01538 1121 aa7.02□□□□□ -1.29
VPS50-210ENST00000471188 POTEHQ6S545 545 aa7□□□□□ -1.29
VPS50-210ENST00000471188 PCGF6Q9BYE7 350 aa6.99□□□□□ -1.29
VPS50-210ENST00000471188 ABCB7O75027 752 aa6.97□□□□□ -1.29
VPS50-210ENST00000471188 EHMT2Q96KQ7 1210 aa6.96□□□□□ -1.29
VPS50-210ENST00000471188 FOXD4L1Q9NU39 408 aa6.96□□□□□ -1.3
VPS50-210ENST00000471188 ZBTB22O15209 634 aa6.95□□□□□ -1.3
VPS50-210ENST00000471188 MYCNP04198 464 aaPredicted RBP6.93□□□□□ -1.3
VPS50-210ENST00000471188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.92□□□□□ -1.3
VPS50-210ENST00000471188 HNRNPUL2Q1KMD3 747 aaKnown RBP6.92□□□□□ -1.3
VPS50-210ENST00000471188 DSG3P32926 999 aa6.91□□□□□ -1.3
VPS50-210ENST00000471188 SAMD1Q6SPF0 538 aaPredicted RBP6.91□□□□□ -1.3
VPS50-210ENST00000471188 ZNF219Q9P2Y4 722 aaPredicted RBP6.86□□□□□ -1.31
VPS50-210ENST00000471188 ATF5Q9Y2D1 282 aaPredicted RBP6.83□□□□□ -1.32
VPS50-210ENST00000471188 POLA2Q14181 598 aa6.82□□□□□ -1.32
VPS50-210ENST00000471188 RBM42Q9BTD8 480 aaKnown RBP6.8□□□□□ -1.32
VPS50-210ENST00000471188 CSRNP3Q8WYN3 585 aa6.77□□□□□ -1.33
VPS50-210ENST00000471188 SUPT5HO00267 1087 aaKnown RBP6.77□□□□□ -1.33
VPS50-210ENST00000471188 UNC13AQ9UPW8 1703 aa6.68□□□□□ -1.34
VPS50-210ENST00000471188 SHROOM4Q9ULL8 1493 aa6.68□□□□□ -1.34
VPS50-210ENST00000471188 GTF3C3Q9Y5Q9 886 aa6.67□□□□□ -1.34
VPS50-210ENST00000471188 MYO15BQ96JP2 1530 aa6.67□□□□□ -1.34
VPS50-210ENST00000471188 ACIN1Q9UKV3 1341 aaKnown RBP6.66□□□□□ -1.34
VPS50-210ENST00000471188 NEUROD1Q13562 356 aa6.65□□□□□ -1.34
VPS50-210ENST00000471188 ZEB1P37275 1124 aaPredicted RBP6.64□□□□□ -1.35
VPS50-210ENST00000471188 TRIM26Q12899 539 aaPredicted RBP6.62□□□□□ -1.35
VPS50-210ENST00000471188 CENPBP07199 599 aaPredicted RBP6.61□□□□□ -1.35
VPS50-210ENST00000471188 TTBK1Q5TCY1 1321 aaPredicted RBP6.6□□□□□ -1.35
VPS50-210ENST00000471188 ATXN8OSP0DMR3 200 aa6.6□□□□□ -1.35
VPS50-210ENST00000471188 OSCARQ8IYS5 282 aa6.6□□□□□ -1.35
VPS50-210ENST00000471188 ZBTB12Q9Y330 459 aaPredicted RBP6.59□□□□□ -1.35
VPS50-210ENST00000471188 CHRDL2Q6WN34 429 aa6.58□□□□□ -1.36
VPS50-210ENST00000471188 BCL11AQ9H165 835 aa6.57□□□□□ -1.36
VPS50-210ENST00000471188 LOC105371045A0A1W2PR82 267 aa6.56□□□□□ -1.36
VPS50-210ENST00000471188 NACADO15069 1562 aa6.54□□□□□ -1.36
VPS50-210ENST00000471188 FBLN2P98095 1184 aa6.54□□□□□ -1.36
VPS50-210ENST00000471188 AKT1S1Q96B36 256 aa6.54□□□□□ -1.36
VPS50-210ENST00000471188 DCAF1Q9Y4B6 1507 aa6.52□□□□□ -1.37
VPS50-210ENST00000471188 RB1CC1Q8TDY2 1594 aa6.52□□□□□ -1.37
VPS50-210ENST00000471188 BICRAQ9NZM4 1560 aa6.51□□□□□ -1.37
VPS50-210ENST00000471188 FAM9AQ8IZU1 332 aaPredicted RBP6.5□□□□□ -1.37
VPS50-210ENST00000471188 YTHDC1Q96MU7 727 aaKnown RBP6.49□□□□□ -1.37
VPS50-210ENST00000471188 ABCC9O60706 1549 aa6.49□□□□□ -1.37
VPS50-210ENST00000471188 MKRN4PQ13434 485 aaPredicted RBP6.48□□□□□ -1.37
VPS50-210ENST00000471188 SP7Q8TDD2 431 aaPredicted RBP6.48□□□□□ -1.37
VPS50-210ENST00000471188 DIEXFQ68CQ4 756 aaKnown RBP6.47□□□□□ -1.37
VPS50-210ENST00000471188 PRKCSHP14314 528 aaPredicted RBP6.46□□□□□ -1.38
VPS50-210ENST00000471188 ZNF692Q9BU19 519 aaPredicted RBP6.44□□□□□ -1.38
VPS50-210ENST00000471188 CLEC11AQ9Y240 323 aa6.42□□□□□ -1.38
VPS50-210ENST00000471188 ANP32EQ9BTT0 268 aa6.41□□□□□ -1.38
VPS50-210ENST00000471188 CCER1Q8TC90 406 aaPredicted RBP6.41□□□□□ -1.38
VPS50-210ENST00000471188 REM2Q8IYK8 340 aaPredicted RBP6.39□□□□□ -1.39
VPS50-210ENST00000471188 SPDYE2BA6NHP3 402 aa6.39□□□□□ -1.39
VPS50-210ENST00000471188 SPDYE6P0CI01 402 aa6.39□□□□□ -1.39
VPS50-210ENST00000471188 SPDYE2Q495Y8 402 aa6.39□□□□□ -1.39
VPS50-210ENST00000471188 PABPN1Q86U42 306 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS50-210ENST00000471188 PIP4P2Q8N4L2 257 aa6.35□□□□□ -1.39
VPS50-210ENST00000471188 PITPNM1O00562 1244 aa6.34□□□□□ -1.39
VPS50-210ENST00000471188 ERICH6Q7L0X2 663 aa6.33□□□□□ -1.4
VPS50-210ENST00000471188 HAX1O00165 279 aa6.33□□□□□ -1.4
VPS50-210ENST00000471188 FXR2P51116 673 aaKnown RBP eCLIP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms