RNA–Protein interactions for RNA: ENST00000439962.1

EDEM3-203, Transcript of ER degradation enhancing alpha-mannosidase like protein 3, humanhuman

TSL 1 (best)

Gene EDEM3, Length 2,872 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM3-203ENST00000439962 UPF1Q92900 1129 aaKnown RBP eCLIP6.36□□□□□ -1.392e-7■■□□□ 12.8
EDEM3-203ENST00000439962 POLR3AO14802 1390 aaPredicted RBP6.36□□□□□ -1.39
EDEM3-203ENST00000439962 RGS12O14924 1447 aa6.36□□□□□ -1.39
EDEM3-203ENST00000439962 PSDA5PKW4 1024 aaPredicted RBP6.36□□□□□ -1.39
EDEM3-203ENST00000439962 KCNQ4P56696 695 aa6.36□□□□□ -1.39
EDEM3-203ENST00000439962 NSD3Q9BZ95 1437 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 EN1Q05925 392 aaPredicted RBP6.35□□□□□ -1.39
EDEM3-203ENST00000439962 SF3B2Q13435 895 aaKnown RBP6.35□□□□□ -1.39
EDEM3-203ENST00000439962 CDCA8Q53HL2 280 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 ANKRD24Q8TF21 1146 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 KNSTRNQ9Y448 316 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 SBNO2Q9Y2G9 1366 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 VPS72Q15906 364 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 MAP3K19Q56UN5 1328 aa6.35□□□□□ -1.39
EDEM3-203ENST00000439962 ARHGEF25Q86VW2 580 aa6.34□□□□□ -1.39
EDEM3-203ENST00000439962 SHPRHQ149N8 1683 aa6.34□□□□□ -1.39
EDEM3-203ENST00000439962 MORC1Q86VD1 984 aa6.34□□□□□ -1.39
EDEM3-203ENST00000439962 TCP11L2Q8N4U5 519 aa6.34□□□□□ -1.39
EDEM3-203ENST00000439962 KCNH5Q8NCM2 988 aa6.34□□□□□ -1.39
EDEM3-203ENST00000439962 DDB1Q16531 1140 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 PARD3Q8TEW0 1356 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 SPATA31A1Q5TZJ5 1347 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 SPATA31A5Q5VU36 1347 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 RNF123Q5XPI4 1314 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 SPATA31A7Q8IWB4 1347 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 MYBBP1AQ9BQG0 1328 aaKnown RBP6.33□□□□□ -1.4
EDEM3-203ENST00000439962 KCNQ2O43526 872 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 APBA3O96018 575 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 HNRNPUQ00839 825 aaKnown RBP eCLIP6.33□□□□□ -1.4
EDEM3-203ENST00000439962 FKBP8Q14318 412 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 KIF1AQ12756 1690 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 ADGRB2O60241 1585 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 CD163L1Q9NR16 1453 aa6.33□□□□□ -1.4
EDEM3-203ENST00000439962 NPC1L1Q9UHC9 1359 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 CAMTA1Q9Y6Y1 1673 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 CGNL1Q0VF96 1302 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 TTC21AQ8NDW8 1320 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 MRS2Q9HD23 443 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 PCNTO95613 3336 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 HMOX1P09601 288 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 HOXC9P31274 260 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 NBPF6Q5VWK0 638 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 NBPF4Q96M43 638 aa6.32□□□□□ -1.4
EDEM3-203ENST00000439962 SLIT2O94813 1529 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 CPSF1Q10570 1443 aaKnown RBP6.31□□□□□ -1.4
EDEM3-203ENST00000439962 ANKRD36BQ8N2N9 1353 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 EXOC5O00471 708 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 U2SURPO15042 1029 aaKnown RBP6.31□□□□□ -1.4
EDEM3-203ENST00000439962 TSHZ2Q9NRE2 1034 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 USP19O94966 1318 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 ITSN1Q15811 1721 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 EZH2Q15910 746 aaKnown RBP6.31□□□□□ -1.4
EDEM3-203ENST00000439962 PPP4R2Q9NY27 417 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 MYOM1P52179 1685 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 ATRNO75882 1429 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 EDC4Q6P2E9 1401 aaKnown RBP6.31□□□□□ -1.4
EDEM3-203ENST00000439962 SSH2Q76I76 1423 aa6.31□□□□□ -1.4
EDEM3-203ENST00000439962 ERBB3P21860 1342 aa6.3□□□□□ -1.4
EDEM3-203ENST00000439962 TRPM3Q9HCF6 1732 aaPredicted RBP6.3□□□□□ -1.4
EDEM3-203ENST00000439962 WDR17Q8IZU2 1322 aa6.3□□□□□ -1.4
EDEM3-203ENST00000439962 MARCH10Q8NA82 808 aaPredicted RBP6.3□□□□□ -1.4
EDEM3-203ENST00000439962 BLMP54132 1417 aaPredicted RBP6.3□□□□□ -1.4
EDEM3-203ENST00000439962 PIK3C2AO00443 1686 aa6.3□□□□□ -1.4
EDEM3-203ENST00000439962 R3HDM1Q15032 1099 aaKnown RBP6.29□□□□□ -1.4
EDEM3-203ENST00000439962 AEBP1Q8IUX7 1158 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 RAPGEF4Q8WZA2 1011 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 POLKQ9UBT6 870 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 ALS2Q96Q42 1657 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 IL2RBP14784 551 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 MTHFSP49914 203 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 MPRIPQ6WCQ1 1025 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 SMIM5Q71RC9 77 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 PNISRQ8TF01 805 aaKnown RBP6.29□□□□□ -1.4
EDEM3-203ENST00000439962 IP6K1Q92551 441 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 WWC3Q9ULE0 1092 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 NUDCQ9Y266 331 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 COL5A2P05997 1499 aaPredicted RBP6.29□□□□□ -1.4
EDEM3-203ENST00000439962 GLI3P10071 1580 aa6.29□□□□□ -1.4
EDEM3-203ENST00000439962 KLHL34Q8N239 644 aa6.28□□□□□ -1.4
EDEM3-203ENST00000439962 RGPD5Q99666 1765 aa6.28□□□□□ -1.4
EDEM3-203ENST00000439962 MSH5O43196 834 aa6.28□□□□□ -1.4
EDEM3-203ENST00000439962 BCL11BQ9C0K0 894 aaPredicted RBP6.28□□□□□ -1.4
EDEM3-203ENST00000439962 PLCH1Q4KWH8 1693 aa6.28□□□□□ -1.4
EDEM3-203ENST00000439962 TOPAZ1Q8N9V7 1692 aa6.28□□□□□ -1.4
EDEM3-203ENST00000439962 AATKQ6ZMQ8 1374 aa6.28□□□□□ -1.4
EDEM3-203ENST00000439962 PRIM1P49642 420 aaKnown RBP6.28□□□□□ -1.4
EDEM3-203ENST00000439962 PDGFDQ9GZP0 370 aaPredicted RBP6.28□□□□□ -1.4
EDEM3-203ENST00000439962 CRB1P82279 1406 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 BAG6P46379 1132 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 SULT6B1Q6IMI4 303 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 FAM196AQ6ZSG2 479 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 EYA1Q99502 592 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 CARD10Q9BWT7 1032 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 PPP1R1BQ9UD71 204 aaPredicted RBP6.27□□□□□ -1.41
EDEM3-203ENST00000439962 EIF4A2Q14240 407 aaKnown RBP6.27□□□□□ -1.41
EDEM3-203ENST00000439962 NGEFQ8N5V2 710 aa6.27□□□□□ -1.41
EDEM3-203ENST00000439962 NRKQ7Z2Y5 1582 aa6.26□□□□□ -1.41
EDEM3-203ENST00000439962 FANCIQ9NVI1 1328 aa6.26□□□□□ -1.41
EDEM3-203ENST00000439962 CPDO75976 1380 aa6.26□□□□□ -1.41
EDEM3-203ENST00000439962 PER1O15534 1290 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms