RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 CROCC2H7BZ55 1655 aa12.3□□□□□ -0.44
PTCHD4-202ENST00000398738 MCTP1Q6DN14 999 aa12.3□□□□□ -0.44
PTCHD4-202ENST00000398738 WDR63Q8IWG1 891 aa12.3□□□□□ -0.44
PTCHD4-202ENST00000398738 NINLQ9Y2I6 1382 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 APBB1O00213 710 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 MKRN3Q13064 507 aaKnown RBP12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 CAVIN1Q6NZI2 390 aaKnown RBP12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 MPNDQ8N594 471 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 SCAF11Q99590 1463 aaKnown RBP12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 NSD3Q9BZ95 1437 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 CDC42BPAQ5VT25 1732 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 GOLGA6L22H0YM25 854 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 KIF3BO15066 747 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 CHAMP1Q96JM3 812 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 DDX19BQ9UMR2 479 aa12.29□□□□□ -0.44
PTCHD4-202ENST00000398738 FECHP22830 423 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 MFSD10Q14728 455 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 ATF7IPQ6VMQ6 1270 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 NGEFQ8N5V2 710 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 GAS2L2Q8NHY3 880 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 ARHGAP5Q13017 1502 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 SYCP2Q9BX26 1530 aa12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 XPCQ01831 940 aaPredicted RBP12.28□□□□□ -0.44
PTCHD4-202ENST00000398738 ASXL2Q76L83 1435 aa12.27□□□□□ -0.45
PTCHD4-202ENST00000398738 RAB3GAP1Q15042 981 aa12.26□□□□□ -0.45
PTCHD4-202ENST00000398738 CHD1LQ86WJ1 897 aa12.26□□□□□ -0.45
PTCHD4-202ENST00000398738 GGNBP2Q9H3C7 697 aa12.26□□□□□ -0.45
PTCHD4-202ENST00000398738 ABCA9Q8IUA7 1624 aa12.26□□□□□ -0.45
PTCHD4-202ENST00000398738 FOXD4L6Q3SYB3 417 aaPredicted RBP12.26□□□□□ -0.45
PTCHD4-202ENST00000398738 FOXD4L3Q6VB84 417 aaPredicted RBP12.26□□□□□ -0.45
PTCHD4-202ENST00000398738 GRXCR2A6NFK2 248 aa12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 K7ELQ4 463 aaPredicted RBP12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 RIPK4P57078 832 aa12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 AAMPQ13685 434 aa12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 SKOR2Q2VWA4 1001 aaPredicted RBP12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 ZSCAN30Q86W11 494 aa12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 PDCD7Q8N8D1 485 aaKnown RBP12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 RNF214Q8ND24 703 aa12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 RBM27Q9P2N5 1060 aaKnown RBP12.25□□□□□ -0.45
PTCHD4-202ENST00000398738 TPM2P07951 284 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 CALD1Q05682 793 aaKnown RBP12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 SMC5Q8IY18 1101 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 SPAG9O60271 1321 aaKnown RBP12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 POLR3AO14802 1390 aaPredicted RBP12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 HDAC1Q13547 482 aaPredicted RBP12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 PKP1Q13835 747 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 TMEM92Q6UXU6 159 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 TBC1D9Q6ZT07 1266 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 CCDC173Q0VFZ6 552 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 THUMPD2Q9BTF0 503 aaKnown RBP12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 PDCL3Q9H2J4 239 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 RTEL1-TNFRSF6BF6WH68 1400 aa12.24□□□□□ -0.45
PTCHD4-202ENST00000398738 BAG4O95429 457 aaKnown RBP12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 FBLN1P23142 703 aa12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 CAMK2BQ13554 666 aa12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 PRPF40AO75400 957 aaKnown RBP12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 ATN1P54259 1190 aaPredicted RBP12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 ZBTB40Q9NUA8 1239 aa12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 STK26Q9P289 416 aa12.23□□□□□ -0.45
PTCHD4-202ENST00000398738 TMPOP42166 694 aaKnown RBP12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 RBM25P49756 843 aaKnown RBP12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 NUCB1Q02818 461 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 EFCAB2Q5VUJ9 269 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 GPIHBP1Q8IV16 184 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 MICALL2Q8IY33 904 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 PRDM10Q9NQV6 1147 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 SAMD9LQ8IVG5 1584 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 NPC1L1Q9UHC9 1359 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 C2orf72A6NCS6 295 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 KIF2CQ99661 725 aa12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 PRIM1P49642 420 aaKnown RBP12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 NOL8Q76FK4 1167 aaKnown RBP12.22□□□□□ -0.45
PTCHD4-202ENST00000398738 SNX21Q969T3 373 aa12.21□□□□□ -0.45
PTCHD4-202ENST00000398738 DDIT3P35638 169 aa12.21□□□□□ -0.46
PTCHD4-202ENST00000398738 ISY1Q9ULR0 285 aaKnown RBP12.21□□□□□ -0.46
PTCHD4-202ENST00000398738 EIF2AK4Q9P2K8 1649 aaKnown RBP12.21□□□□□ -0.46
PTCHD4-202ENST00000398738 IPO8O15397 1037 aaKnown RBP12.2□□□□□ -0.46
PTCHD4-202ENST00000398738 DDX12PQ92771 950 aa12.2□□□□□ -0.46
PTCHD4-202ENST00000398738 GPHNQ9NQX3 736 aaPredicted RBP12.2□□□□□ -0.46
PTCHD4-202ENST00000398738 RBSNQ9H1K0 784 aa12.2□□□□□ -0.46
PTCHD4-202ENST00000398738 ERVK-7P63135 1459 aa12.2□□□□□ -0.46
PTCHD4-202ENST00000398738 UQCRHLA0A096LP55 91 aa12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 OFD1O75665 1012 aa12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 UQCRHP07919 91 aa12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 PTMAP06454 111 aaKnown RBP12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 SRPK2P78362 688 aaKnown RBP12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 DNTTIP2Q5QJE6 756 aaKnown RBP12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 C16orf71Q8IYS4 520 aaPredicted RBP12.19□□□□□ -0.46
PTCHD4-202ENST00000398738 ZSCAN23Q3MJ62 389 aa12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 ZGPATQ8N5A5 531 aaKnown RBP12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 SYNMO15061 1565 aa12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 ATAD2Q6PL18 1390 aa12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 KLHL40Q2TBA0 621 aa12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 KRI1Q8N9T8 703 aaKnown RBP12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 FAM117AQ9C073 453 aa12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 JARID2Q92833 1246 aaPredicted RBP12.18□□□□□ -0.46
PTCHD4-202ENST00000398738 SYCE3A1L190 88 aa12.17□□□□□ -0.46
PTCHD4-202ENST00000398738 HMOX1P09601 288 aa12.17□□□□□ -0.46
PTCHD4-202ENST00000398738 BMP2KLQ5H9B9 411 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms