RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 NUDT16Q96DE0 195 aaKnown RBP13.98□□□□□ -0.17
CCDC40-203ENST00000374877 PHF23Q9BUL5 403 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-203ENST00000374877 ANKARQ7Z5J8 1434 aa13.98□□□□□ -0.17
CCDC40-203ENST00000374877 TSR2Q969E8 191 aaKnown RBP13.98□□□□□ -0.17
CCDC40-203ENST00000374877 NAP1L5Q96NT1 182 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-203ENST00000374877 SMC4Q9NTJ3 1288 aa13.98□□□□□ -0.17
CCDC40-203ENST00000374877 CCDC61Q9Y6R9 512 aa13.98□□□□□ -0.17
CCDC40-203ENST00000374877 TOPAZ1Q8N9V7 1692 aa13.98□□□□□ -0.17
CCDC40-203ENST00000374877 CDC42BPGQ6DT37 1551 aa13.97□□□□□ -0.17
CCDC40-203ENST00000374877 PPIP5K1Q6PFW1 1433 aa13.97□□□□□ -0.17
CCDC40-203ENST00000374877 ITPRIPQ8IWB1 547 aa13.97□□□□□ -0.17
CCDC40-203ENST00000374877 HSCBQ8IWL3 235 aa13.97□□□□□ -0.17
CCDC40-203ENST00000374877 CPSF1Q10570 1443 aaKnown RBP13.97□□□□□ -0.17
CCDC40-203ENST00000374877 FSD2A1L4K1 749 aa13.97□□□□□ -0.17
CCDC40-203ENST00000374877 CABP1Q9NZU7 370 aa13.97□□□□□ -0.17
CCDC40-203ENST00000374877 PNNQ9H307 717 aaKnown RBP13.96□□□□□ -0.17
CCDC40-203ENST00000374877 IQSEC2Q5JU85 1478 aa13.96□□□□□ -0.17
CCDC40-203ENST00000374877 PRR36Q9H6K5 1346 aa13.95□□□□□ -0.18
CCDC40-203ENST00000374877 ADGRL3Q9HAR2 1447 aa13.95□□□□□ -0.18
CCDC40-203ENST00000374877 CCDC27Q2M243 656 aa13.95□□□□□ -0.18
CCDC40-203ENST00000374877 SHPRHQ149N8 1683 aa13.95□□□□□ -0.18
CCDC40-203ENST00000374877 PLEKHG3A1L390 1219 aa13.94□□□□□ -0.18
CCDC40-203ENST00000374877 FMN2Q9NZ56 1722 aa13.94□□□□□ -0.18
CCDC40-203ENST00000374877 EXOSC9Q06265 439 aaKnown RBP13.94□□□□□ -0.18
CCDC40-203ENST00000374877 NCOA3Q9Y6Q9 1424 aa13.94□□□□□ -0.18
CCDC40-203ENST00000374877 TRIM27P14373 513 aa13.93□□□□□ -0.18
CCDC40-203ENST00000374877 HSPA2P54652 639 aa13.93□□□□□ -0.18
CCDC40-203ENST00000374877 EDC4Q6P2E9 1401 aaKnown RBP13.93□□□□□ -0.18
CCDC40-203ENST00000374877 ZNF692Q9BU19 519 aaPredicted RBP13.93□□□□□ -0.18
CCDC40-203ENST00000374877 ITSN1Q15811 1721 aa13.93□□□□□ -0.18
CCDC40-203ENST00000374877 NALCNQ8IZF0 1738 aa13.93□□□□□ -0.18
CCDC40-203ENST00000374877 U2SURPO15042 1029 aaKnown RBP13.93□□□□□ -0.18
CCDC40-203ENST00000374877 MRE11P49959 708 aa13.92□□□□□ -0.18
CCDC40-203ENST00000374877 DDX11L8A8MPP1 907 aa13.92□□□□□ -0.18
CCDC40-203ENST00000374877 DDX19BQ9UMR2 479 aa13.92□□□□□ -0.18
CCDC40-203ENST00000374877 AKAP12Q02952 1782 aa13.92□□□□□ -0.18
CCDC40-203ENST00000374877 MON2Q7Z3U7 1717 aa13.92□□□□□ -0.18
CCDC40-203ENST00000374877 STRCQ7RTU9 1775 aa13.91□□□□□ -0.18
CCDC40-203ENST00000374877 SSH1Q8WYL5 1049 aa13.91□□□□□ -0.18
CCDC40-203ENST00000374877 ANKRD26Q9UPS8 1709 aa13.9□□□□□ -0.18
CCDC40-203ENST00000374877 CLCN1P35523 988 aa13.9□□□□□ -0.18
CCDC40-203ENST00000374877 HDAC1Q13547 482 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-203ENST00000374877 GRPEL1Q9HAV7 217 aa13.9□□□□□ -0.18
CCDC40-203ENST00000374877 ATF7IPQ6VMQ6 1270 aa13.9□□□□□ -0.18
CCDC40-203ENST00000374877 NOB1Q9ULX3 412 aaKnown RBP13.9□□□□□ -0.18
CCDC40-203ENST00000374877 LNPKQ9C0E8 428 aa13.89□□□□□ -0.19
CCDC40-203ENST00000374877 HSP90AB1P08238 724 aaKnown RBP13.89□□□□□ -0.19
CCDC40-203ENST00000374877 TMEM57Q8N5G2 664 aa13.89□□□□□ -0.19
CCDC40-203ENST00000374877 KIF20BQ96Q89 1820 aa13.88□□□□□ -0.19
CCDC40-203ENST00000374877 HSP90AA1P07900 732 aaKnown RBP13.88□□□□□ -0.19
CCDC40-203ENST00000374877 CT47B1P0C2W7 299 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-203ENST00000374877 SMC5Q8IY18 1101 aa13.88□□□□□ -0.19
CCDC40-203ENST00000374877 NRKQ7Z2Y5 1582 aa13.88□□□□□ -0.19
CCDC40-203ENST00000374877 FYB1O15117 783 aa13.87□□□□□ -0.19
CCDC40-203ENST00000374877 PROSER2Q86WR7 435 aaPredicted RBP13.87□□□□□ -0.19
CCDC40-203ENST00000374877 FOXD4L1Q9NU39 408 aa13.87□□□□□ -0.19
CCDC40-203ENST00000374877 DCCP43146 1447 aa13.87□□□□□ -0.19
CCDC40-203ENST00000374877 TMPOP42166 694 aaKnown RBP13.87□□□□□ -0.19
CCDC40-203ENST00000374877 USP6P35125 1406 aa13.87□□□□□ -0.19
CCDC40-203ENST00000374877 TNPO1Q92973 898 aaKnown RBP13.86□□□□□ -0.19
CCDC40-203ENST00000374877 ACEP12821 1306 aa13.86□□□□□ -0.19
CCDC40-203ENST00000374877 TRIM44Q96DX7 344 aaPredicted RBP13.86□□□□□ -0.19
CCDC40-203ENST00000374877 SSH2Q76I76 1423 aa13.86□□□□□ -0.19
CCDC40-203ENST00000374877 STRCP1A6NGW2 1772 aa13.85□□□□□ -0.19
CCDC40-203ENST00000374877 ESPNB1AK53 854 aa13.85□□□□□ -0.19
CCDC40-203ENST00000374877 GBP4Q96PP9 640 aa13.85□□□□□ -0.19
CCDC40-203ENST00000374877 ZBTB40Q9NUA8 1239 aa13.85□□□□□ -0.19
CCDC40-203ENST00000374877 TRIM35Q9UPQ4 493 aa13.84□□□□□ -0.19
CCDC40-203ENST00000374877 RBM25P49756 843 aaKnown RBP13.84□□□□□ -0.19
CCDC40-203ENST00000374877 GGNBP2Q9H3C7 697 aa13.84□□□□□ -0.19
CCDC40-203ENST00000374877 C19orf44Q9H6X5 657 aa13.84□□□□□ -0.19
CCDC40-203ENST00000374877 TTC21AQ8NDW8 1320 aa13.84□□□□□ -0.19
CCDC40-203ENST00000374877 TMEM94Q12767 1356 aa13.84□□□□□ -0.19
CCDC40-203ENST00000374877 IPO8O15397 1037 aaKnown RBP13.83□□□□□ -0.2
CCDC40-203ENST00000374877 RIPK4P57078 832 aa13.83□□□□□ -0.2
CCDC40-203ENST00000374877 NUCB1Q02818 461 aa13.83□□□□□ -0.2
CCDC40-203ENST00000374877 NCBP3Q53F19 620 aaKnown RBP13.83□□□□□ -0.2
CCDC40-203ENST00000374877 TTC21BQ7Z4L5 1316 aa13.83□□□□□ -0.2
CCDC40-203ENST00000374877 C14orf37Q86TY3 774 aa13.83□□□□□ -0.2
CCDC40-203ENST00000374877 CHD1LQ86WJ1 897 aa13.83□□□□□ -0.2
CCDC40-203ENST00000374877 SNX21Q969T3 373 aa13.83□□□□□ -0.2
CCDC40-203ENST00000374877 NUTM2FA1L443 756 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 ERBB4Q15303 1308 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 KIF16BQ96L93 1317 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 GLIPR1L2Q4G1C9 344 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 GAS2L3Q86XJ1 694 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 ISY1Q9ULR0 285 aaKnown RBP13.82□□□□□ -0.2
CCDC40-203ENST00000374877 DDIT3P35638 169 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 HSP90AA2PQ14568 343 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-203ENST00000374877 PLEKHF1Q96S99 279 aa13.82□□□□□ -0.2
CCDC40-203ENST00000374877 ANKRD45Q5TZF3 282 aa13.81□□□□□ -0.2
CCDC40-203ENST00000374877 NGDNQ8NEJ9 315 aaKnown RBP13.81□□□□□ -0.2
CCDC40-203ENST00000374877 AATKQ6ZMQ8 1374 aa13.81□□□□□ -0.2
CCDC40-203ENST00000374877 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.81□□□□□ -0.2
CCDC40-203ENST00000374877 PHF8Q9UPP1 1060 aa13.81□□□□□ -0.2
CCDC40-203ENST00000374877 RGPD8O14715 1765 aaPredicted RBP13.81□□□□□ -0.2
CCDC40-203ENST00000374877 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
CCDC40-203ENST00000374877 USP31Q70CQ4 1352 aa13.8□□□□□ -0.2
CCDC40-203ENST00000374877 RAB3GAP1Q15042 981 aa13.8□□□□□ -0.2
CCDC40-203ENST00000374877 C1orf115Q9H7X2 142 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms