RNA–Protein interactions for RNA: ENST00000356147.3

PTPRA-203, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,135 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-203ENST00000356147 R3HCC1Q9Y3T6 440 aaKnown RBP12.55□□□□□ -0.4
PTPRA-203ENST00000356147 EMILIN1Q9Y6C2 1016 aa12.55□□□□□ -0.4
PTPRA-203ENST00000356147 MYO3AQ8NEV4 1616 aa12.54□□□□□ -0.4
PTPRA-203ENST00000356147 ALDH1L2Q3SY69 923 aa12.54□□□□□ -0.4
PTPRA-203ENST00000356147 CALD1Q05682 793 aaKnown RBP12.54□□□□□ -0.4
PTPRA-203ENST00000356147 CCDC173Q0VFZ6 552 aa12.54□□□□□ -0.4
PTPRA-203ENST00000356147 RNF214Q8ND24 703 aa12.54□□□□□ -0.4
PTPRA-203ENST00000356147 ISY1Q9ULR0 285 aaKnown RBP12.54□□□□□ -0.4
PTPRA-203ENST00000356147 VGFO15240 615 aaPredicted RBP12.53□□□□□ -0.4
PTPRA-203ENST00000356147 PRIM1P49642 420 aaKnown RBP12.53□□□□□ -0.4
PTPRA-203ENST00000356147 KLHL40Q2TBA0 621 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 TWISTNBQ3B726 338 aaPredicted RBP12.53□□□□□ -0.4
PTPRA-203ENST00000356147 ZSCAN30Q86W11 494 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 PLEKHM2Q8IWE5 1019 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 TERF2IPQ9NYB0 399 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 IL16Q14005 1332 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 IDI1Q13907 227 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 ZSCAN23Q3MJ62 389 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 FAM13BQ9NYF5 915 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 NSFL1CQ9UNZ2 370 aaKnown RBP12.53□□□□□ -0.4
PTPRA-203ENST00000356147 ADGRB3O60242 1522 aa12.53□□□□□ -0.4
PTPRA-203ENST00000356147 IFT172Q9UG01 1749 aa12.52□□□□□ -0.4
PTPRA-203ENST00000356147 NSD2O96028 1365 aa12.52□□□□□ -0.4
PTPRA-203ENST00000356147 INO80Q9ULG1 1556 aaPredicted RBP12.52□□□□□ -0.41
PTPRA-203ENST00000356147 TSHZ3Q63HK5 1081 aa12.52□□□□□ -0.41
PTPRA-203ENST00000356147 POLKQ9UBT6 870 aa12.52□□□□□ -0.41
PTPRA-203ENST00000356147 CDK19Q9BWU1 502 aa12.51□□□□□ -0.41
PTPRA-203ENST00000356147 LMBRD1Q9NUN5 540 aa12.51□□□□□ -0.41
PTPRA-203ENST00000356147 COL3A1P02461 1466 aaPredicted RBP12.51□□□□□ -0.41
PTPRA-203ENST00000356147 RAPGEF3O95398 923 aa12.51□□□□□ -0.41
PTPRA-203ENST00000356147 PPP1R9BQ96SB3 815 aa12.51□□□□□ -0.41
PTPRA-203ENST00000356147 GLI2P10070 1586 aa12.51□□□□□ -0.41
PTPRA-203ENST00000356147 FCHSD2O94868 740 aa12.51□□□□□ -0.41
PTPRA-203ENST00000356147 SYCE3A1L190 88 aa12.5□□□□□ -0.41
PTPRA-203ENST00000356147 RRS1Q15050 365 aaKnown RBP12.5□□□□□ -0.41
PTPRA-203ENST00000356147 NFE2L2Q16236 605 aa12.5□□□□□ -0.41
PTPRA-203ENST00000356147 HDGFL2Q7Z4V5 671 aaPredicted RBP12.5□□□□□ -0.41
PTPRA-203ENST00000356147 WAPLQ7Z5K2 1190 aa12.5□□□□□ -0.41
PTPRA-203ENST00000356147 GPT2Q8TD30 523 aa12.5□□□□□ -0.41
PTPRA-203ENST00000356147 SETBP1Q9Y6X0 1596 aa12.5□□□□□ -0.41
PTPRA-203ENST00000356147 ZC3H13Q5T200 1668 aaKnown RBP12.5□□□□□ -0.41
PTPRA-203ENST00000356147 USP26Q9BXU7 913 aa12.5□□□□□ -0.41
PTPRA-203ENST00000356147 SDSP20132 328 aa12.49□□□□□ -0.41
PTPRA-203ENST00000356147 CFAP74Q9C0B2 1584 aa12.49□□□□□ -0.41
PTPRA-203ENST00000356147 RABEP1Q15276 862 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 NCBP3Q53F19 620 aaKnown RBP12.48□□□□□ -0.41
PTPRA-203ENST00000356147 TTC22Q5TAA0 569 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 NCKAP5LQ9HCH0 1330 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 ZDHHC9Q9Y397 364 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 TPM2P07951 284 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 LRRC7Q96NW7 1537 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 DTNBO60941 627 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 NME9Q86XW9 330 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 TMEM63CQ9P1W3 806 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 CAMSAP1Q5T5Y3 1602 aa12.48□□□□□ -0.41
PTPRA-203ENST00000356147 ABCC4O15439 1325 aa12.47□□□□□ -0.41
PTPRA-203ENST00000356147 OFD1O75665 1012 aa12.47□□□□□ -0.41
PTPRA-203ENST00000356147 GNAI1P63096 354 aa12.47□□□□□ -0.41
PTPRA-203ENST00000356147 GDPD2Q9HCC8 539 aa12.47□□□□□ -0.41
PTPRA-203ENST00000356147 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.47□□□□□ -0.41
PTPRA-203ENST00000356147 PPLO60437 1756 aa12.47□□□□□ -0.41
PTPRA-203ENST00000356147 SOX12O15370 315 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 JARID2Q92833 1246 aaPredicted RBP12.46□□□□□ -0.41
PTPRA-203ENST00000356147 MIS18AQ9NYP9 233 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 RPGRIP1LQ68CZ1 1315 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 PTMSP20962 102 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 NUCB2P80303 420 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 MEIS3Q99687 375 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 MED14O60244 1454 aa12.46□□□□□ -0.41
PTPRA-203ENST00000356147 KIDINS220Q9ULH0 1771 aa12.46□□□□□ -0.42
PTPRA-203ENST00000356147 DCTPP1Q9H773 170 aa12.46□□□□□ -0.42
PTPRA-203ENST00000356147 USP32Q8NFA0 1604 aa12.46□□□□□ -0.42
PTPRA-203ENST00000356147 ZNF445P59923 1031 aa12.45□□□□□ -0.42
PTPRA-203ENST00000356147 INTS3Q68E01 1043 aaKnown RBP12.45□□□□□ -0.42
PTPRA-203ENST00000356147 SLC4A10Q6U841 1118 aa12.45□□□□□ -0.42
PTPRA-203ENST00000356147 CD163L1Q9NR16 1453 aa12.45□□□□□ -0.42
PTPRA-203ENST00000356147 FBXO31Q5XUX0 539 aaPredicted RBP12.45□□□□□ -0.42
PTPRA-203ENST00000356147 AEBP1Q8IUX7 1158 aa12.45□□□□□ -0.42
PTPRA-203ENST00000356147 ARHGEF28Q8N1W1 1705 aaKnown RBP12.45□□□□□ -0.42
PTPRA-203ENST00000356147 CYP2E1P05181 493 aaPredicted RBP12.44□□□□□ -0.42
PTPRA-203ENST00000356147 NEK4P51957 841 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 MCM10Q7L590 875 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 NEURL4Q96JN8 1562 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 ARHGAP45Q92619 1136 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 API5Q9BZZ5 524 aaKnown RBP12.44□□□□□ -0.42
PTPRA-203ENST00000356147 PDCL3Q9H2J4 239 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 IFT57Q9NWB7 429 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 FAM135BQ49AJ0 1406 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 UQCRHLA0A096LP55 91 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 F6X3S4 739 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 ST18O60284 1047 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 UQCRHP07919 91 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.44□□□□□ -0.42
PTPRA-203ENST00000356147 UHRF1BP1LA0JNW5 1464 aa12.44□□□□□ -0.42
PTPRA-203ENST00000356147 STAG3Q9UJ98 1225 aa12.43□□□□□ -0.42
PTPRA-203ENST00000356147 PTCH1Q13635 1447 aa12.43□□□□□ -0.42
PTPRA-203ENST00000356147 ASXL2Q76L83 1435 aa12.43□□□□□ -0.42
PTPRA-203ENST00000356147 PNPLA6Q8IY17 1366 aa12.43□□□□□ -0.42
PTPRA-203ENST00000356147 CLEC17AQ6ZS10 378 aa12.43□□□□□ -0.42
PTPRA-203ENST00000356147 TSC1Q92574 1164 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms