RNA–Protein interactions for RNA: YPL104W

MSD1, Transcript of Mitochondrial aspartyl-tRNA synthetase, yeast

Gene MSD1, Length 1,977 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSD1	YPL104W	PSH1	Q12161	406 aa		4.29	□□□□□ -1.72
MSD1	YPL104W	YEL077C	Q3E7X8	1277 aa		4.29	□□□□□ -1.72
MSD1	YPL104W	PDR18	P53756	1333 aa		4.29	□□□□□ -1.72
MSD1	YPL104W	SUP35	P05453	685 aa	Known RBP	4.28	□□□□□ -1.72
MSD1	YPL104W	ATE1	P16639	503 aa		4.28	□□□□□ -1.72
MSD1	YPL104W	SSK22	P25390	1331 aa	Predicted RBP	4.28	□□□□□ -1.72
MSD1	YPL104W	BRN1	P38170	754 aa		4.28	□□□□□ -1.72
MSD1	YPL104W	SAC3	P46674	1301 aa		4.28	□□□□□ -1.72
MSD1	YPL104W	NAF1	P53919	492 aa	Known RBP	4.28	□□□□□ -1.72
MSD1	YPL104W	FCP1	Q03254	732 aa		4.28	□□□□□ -1.72
MSD1	YPL104W	BUG1	Q12191	341 aa		4.28	□□□□□ -1.72
MSD1	YPL104W	NYV1	Q12255	253 aa		4.28	□□□□□ -1.72
MSD1	YPL104W	DLD1	P32891	587 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	ECM21	P38167	1117 aa	Known RBP	4.27	□□□□□ -1.73
MSD1	YPL104W	OCA5	P38738	679 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	GCR2	Q01722	534 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	RRP15	Q06511	250 aa	Predicted RBP	4.27	□□□□□ -1.73
MSD1	YPL104W	YRR1	Q12172	810 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	NOT3	P06102	836 aa	Known RBP	4.27	□□□□□ -1.73
MSD1	YPL104W	VAS1	P07806	1104 aa	Known RBP	4.27	□□□□□ -1.73
MSD1	YPL104W	PCT1	P13259	424 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	IME2	P32581	645 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	YEL023C	P39992	682 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	MDJ2	P42834	146 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	EMP47	P43555	445 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	MLC1	P53141	149 aa		4.27	□□□□□ -1.73
MSD1	YPL104W	TRL1	P09880	827 aa	Known RBP	4.26	□□□□□ -1.73
MSD1	YPL104W	HXT10	P43581	546 aa		4.26	□□□□□ -1.73
MSD1	YPL104W	UTP22	P53254	1237 aa	Predicted RBP	4.26	□□□□□ -1.73
MSD1	YPL104W	PUS6	P53294	404 aa		4.26	□□□□□ -1.73
MSD1	YPL104W	RAT1	Q02792	1006 aa	Known RBP	4.26	□□□□□ -1.73
MSD1	YPL104W	SLA1	P32790	1244 aa		4.25	□□□□□ -1.73
MSD1	YPL104W	YGL242C	P53066	181 aa		4.25	□□□□□ -1.73
MSD1	YPL104W	OYE2	Q03558	400 aa	Known RBP	4.25	□□□□□ -1.73
MSD1	YPL104W	CWC15	Q03772	175 aa	Known RBP	4.25	□□□□□ -1.73
MSD1	YPL104W	BRE1	Q07457	700 aa	Known RBP	4.25	□□□□□ -1.73
MSD1	YPL104W	WHI5	Q12416	295 aa		4.25	□□□□□ -1.73
MSD1	YPL104W	SNU66	Q12420	587 aa	Predicted RBP	4.25	□□□□□ -1.73
MSD1	YPL104W	KEX2	P13134	814 aa		4.25	□□□□□ -1.73
MSD1	YPL104W	HXT13	P39924	564 aa		4.25	□□□□□ -1.73
MSD1	YPL104W	LYS4	P49367	693 aa	Predicted RBP	4.25	□□□□□ -1.73
MSD1	YPL104W	EAF7	P53911	425 aa	Known RBP	4.25	□□□□□ -1.73
MSD1	YPL104W	RMD1	Q03441	430 aa		4.25	□□□□□ -1.73
MSD1	YPL104W	PMD1	P32634	1753 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	MST1	P07236	462 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	SEC8	P32855	1065 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	KTR3	P38130	404 aa	Predicted RBP	4.24	□□□□□ -1.73
MSD1	YPL104W	MRPS35	P53292	345 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	HXT17	P53631	564 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	TBF1	Q02457	562 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	UBP16	Q02863	499 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	ERF2	Q06551	359 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	DIB1	Q06819	143 aa	Predicted RBP	4.24	□□□□□ -1.73
MSD1	YPL104W	RIM20	Q12033	661 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	FIG2	P25653	1609 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	ADR1	P07248	1323 aa		4.24	□□□□□ -1.73
MSD1	YPL104W	RNR2	P09938	399 aa	Known RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	SRS2	P12954	1174 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	PPX1	P38698	397 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	NNF1	P47149	201 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	CTH1	P47976	325 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	ALO1	P54783	526 aa	Known RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	POM152	P39685	1337 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	PHO87	P25360	923 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	SPC42	P36094	363 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	AAP1	P37898	856 aa	Known RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	ALD3	P54114	506 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	PNP1	Q05788	311 aa		4.23	□□□□□ -1.73
MSD1	YPL104W	FPR4	Q06205	392 aa	Predicted RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	JIP5	Q06214	492 aa	Predicted RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	RIX7	Q07844	837 aa	Known RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	LSP1	Q12230	341 aa	Known RBP	4.23	□□□□□ -1.73
MSD1	YPL104W	SEC18	P18759	758 aa	Known RBP	4.22	□□□□□ -1.73
MSD1	YPL104W	TOS1	P38288	455 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	OSH3	P38713	996 aa	Known RBP	4.22	□□□□□ -1.73
MSD1	YPL104W	BOL3	P39724	118 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	YNL193W	P53870	558 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	DPL1	Q05567	589 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	CTI6	Q08923	506 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	TPM1	P17536	199 aa	Known RBP	4.22	□□□□□ -1.73
MSD1	YPL104W	VPS24	P36095	224 aa	Known RBP	4.22	□□□□□ -1.73
MSD1	YPL104W	PTC4	P38089	393 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	ACS2	P52910	683 aa	Known RBP	4.22	□□□□□ -1.73
MSD1	YPL104W	ATG1	P53104	897 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	SVF1	Q05515	481 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	RPN7	Q06103	429 aa	Known RBP	4.22	□□□□□ -1.73
MSD1	YPL104W	PUN1	Q06991	263 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	BDF2	Q07442	638 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	RRI2	Q12348	645 aa		4.22	□□□□□ -1.73
MSD1	YPL104W	FAS2	P19097	1887 aa	Known RBP	4.21	□□□□□ -1.73
MSD1	YPL104W	HKR1	P41809	1802 aa		4.21	□□□□□ -1.74
MSD1	YPL104W	PIF1	P07271	859 aa		4.21	□□□□□ -1.74
MSD1	YPL104W	HAP4	P14064	554 aa		4.21	□□□□□ -1.74
MSD1	YPL104W	NGR1	P32831	672 aa	Known RBP	4.21	□□□□□ -1.74
MSD1	YPL104W	YBL086C	P38177	466 aa		4.21	□□□□□ -1.74
MSD1	YPL104W	PBY1	P38254	753 aa		4.21	□□□□□ -1.74
MSD1	YPL104W	GLO3	P38682	493 aa	Known RBP	4.21	□□□□□ -1.74
MSD1	YPL104W	ROM1	P53046	1155 aa		4.21	□□□□□ -1.74
MSD1	YPL104W	STE20	Q03497	939 aa	Known RBP	4.21	□□□□□ -1.74
MSD1	YPL104W	YDL206W	Q12424	762 aa		4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms