RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	KAR5	Q04746	504 aa		5.01	□□□□□ -1.61
PUB1	YNL016W	MMP1	Q12372	583 aa		5.01	□□□□□ -1.61
PUB1	YNL016W	UBP1	P25037	809 aa		5	□□□□□ -1.61
PUB1	YNL016W	YBL086C	P38177	466 aa		5	□□□□□ -1.61
PUB1	YNL016W	TPS3	P38426	1054 aa	Known RBP	5	□□□□□ -1.61
PUB1	YNL016W	IOC3	P43596	787 aa		5	□□□□□ -1.61
PUB1	YNL016W	CAB1	Q04430	367 aa		5	□□□□□ -1.61
PUB1	YNL016W	GLT1	Q12680	2145 aa	Known RBP	4.99	□□□□□ -1.61
PUB1	YNL016W	RDS2	P19541	446 aa	Known RBP	4.99	□□□□□ -1.61
PUB1	YNL016W	TSR4	P25040	408 aa		4.99	□□□□□ -1.61
PUB1	YNL016W	YJU3	P28321	313 aa		4.99	□□□□□ -1.61
PUB1	YNL016W	GRS1	P38088	690 aa	Known RBP	4.99	□□□□□ -1.61
PUB1	YNL016W	HXT10	P43581	546 aa		4.99	□□□□□ -1.61
PUB1	YNL016W	MDG1	P53885	366 aa		4.99	□□□□□ -1.61
PUB1	YNL016W	ECM23	Q02710	187 aa		4.99	□□□□□ -1.61
PUB1	YNL016W	SSB1	P11484	613 aa	Known RBP	4.98	□□□□□ -1.61
PUB1	YNL016W	GAL2	P13181	574 aa		4.98	□□□□□ -1.61
PUB1	YNL016W	SSB2	P40150	613 aa	Known RBP	4.98	□□□□□ -1.61
PUB1	YNL016W	TPM2	P40414	161 aa		4.98	□□□□□ -1.61
PUB1	YNL016W	YPP1	P46951	817 aa		4.98	□□□□□ -1.61
PUB1	YNL016W	ATG1	P53104	897 aa		4.98	□□□□□ -1.61
PUB1	YNL016W	YPR053C	Q6Q5F3	151 aa		4.98	□□□□□ -1.61
PUB1	YNL016W	AI1	P03875	834 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	SCJ1	P25303	377 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	MRT4	P33201	236 aa	Known RBP	4.97	□□□□□ -1.61
PUB1	YNL016W	MGE1	P38523	228 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	OSH7	P38755	437 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	RSC30	P38781	883 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	ALD3	P54114	506 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	RAD9	P14737	1309 aa		4.97	□□□□□ -1.61
PUB1	YNL016W	ARG8	P18544	423 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	SIT4	P20604	311 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	PRP45	P28004	379 aa	Predicted RBP	4.96	□□□□□ -1.62
PUB1	YNL016W	SRP40	P32583	406 aa	Predicted RBP	4.96	□□□□□ -1.62
PUB1	YNL016W	YKL091C	P33324	310 aa	Known RBP	4.96	□□□□□ -1.62
PUB1	YNL016W	MET1	P36150	593 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	UBX7	P38349	436 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	VAC8	P39968	578 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	NOP2	P40991	618 aa	Known RBP	4.96	□□□□□ -1.62
PUB1	YNL016W	RPN11	P43588	306 aa	Known RBP	4.96	□□□□□ -1.62
PUB1	YNL016W	YJL049W	P47048	450 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	NAF1	P53919	492 aa	Known RBP	4.96	□□□□□ -1.62
PUB1	YNL016W	RPN4	Q03465	531 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	TCB1	Q12466	1186 aa		4.96	□□□□□ -1.62
PUB1	YNL016W	BUD6	P41697	788 aa		4.95	□□□□□ -1.62
PUB1	YNL016W	YJR098C	P47139	656 aa		4.95	□□□□□ -1.62
PUB1	YNL016W	ZDS1	P50111	915 aa	Known RBP	4.95	□□□□□ -1.62
PUB1	YNL016W	YGL081W	P53156	320 aa		4.95	□□□□□ -1.62
PUB1	YNL016W	ALD6	P54115	500 aa	Known RBP	4.95	□□□□□ -1.62
PUB1	YNL016W	PUF6	Q04373	656 aa	Known RBP	4.95	□□□□□ -1.62
PUB1	YNL016W	POB3	Q04636	552 aa	Known RBP	4.95	□□□□□ -1.62
PUB1	YNL016W	NUT2	Q06213	157 aa		4.95	□□□□□ -1.62
PUB1	YNL016W	MNL2	Q12205	849 aa		4.95	□□□□□ -1.62
PUB1	YNL016W	RAV1	P47104	1357 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	KIP2	P28743	706 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	MET4	P32389	672 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	GRX4	P32642	244 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	UGA2	P38067	497 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	PMC1	P38929	1173 aa	Predicted RBP	4.94	□□□□□ -1.62
PUB1	YNL016W	BOL3	P39724	118 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	AAD14	P42884	376 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
PUB1	YNL016W	NSE3	Q05541	303 aa		4.94	□□□□□ -1.62
PUB1	YNL016W	URB1	P34241	1764 aa	Known RBP	4.94	□□□□□ -1.62
PUB1	YNL016W	FYV10	P40492	516 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	KTR7	P40504	517 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	ACF4	P47129	309 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	VPS16	Q03308	798 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	SSF2	Q12153	453 aa	Predicted RBP	4.93	□□□□□ -1.62
PUB1	YNL016W	MCM16	Q12262	181 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	PSK1	P31374	1356 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	EDE1	P34216	1381 aa		4.93	□□□□□ -1.62
PUB1	YNL016W	PDC1	P06169	563 aa	Known RBP	4.92	□□□□□ -1.62
PUB1	YNL016W	ARG82	P07250	355 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
PUB1	YNL016W	DLD1	P32891	587 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	TAF5	P38129	798 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	DOT5	P40553	215 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	YOL057W	Q08225	711 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	PIN2	Q12057	282 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	FRT1	Q99332	602 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	TY4B-H	P0C2J7	1802 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	TY4B-J	P47024	1803 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	SSM4	P40318	1319 aa		4.92	□□□□□ -1.62
PUB1	YNL016W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
PUB1	YNL016W	SKN7	P38889	622 aa		4.91	□□□□□ -1.62
PUB1	YNL016W	NPR2	P39923	615 aa		4.91	□□□□□ -1.62
PUB1	YNL016W	LYS4	P49367	693 aa	Predicted RBP	4.91	□□□□□ -1.62
PUB1	YNL016W	RMD1	Q03441	430 aa		4.91	□□□□□ -1.62
PUB1	YNL016W	IKI3	Q06706	1349 aa	Known RBP	4.91	□□□□□ -1.62
PUB1	YNL016W	PRP5	P21372	849 aa	Predicted RBP	4.91	□□□□□ -1.62
PUB1	YNL016W	RTF1	P53064	558 aa		4.91	□□□□□ -1.62
PUB1	YNL016W	PNP1	Q05788	311 aa		4.91	□□□□□ -1.62
PUB1	YNL016W	CLN2	P20438	545 aa		4.9	□□□□□ -1.63
PUB1	YNL016W	IXR1	P33417	597 aa		4.9	□□□□□ -1.63
PUB1	YNL016W	ENP1	P38333	483 aa	Known RBP	4.9	□□□□□ -1.63
PUB1	YNL016W	FOX2	Q02207	900 aa	Known RBP	4.9	□□□□□ -1.63
PUB1	YNL016W	FKS3	Q04952	1785 aa		4.9	□□□□□ -1.63
PUB1	YNL016W	ROM2	P51862	1356 aa	Known RBP	4.89	□□□□□ -1.63
PUB1	YNL016W	SRS2	P12954	1174 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 84.4 ms