RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W SEC18P18759 758 aaKnown RBP5.37□□□□□ -1.55
SSH4YKL124W PCS60P38137 543 aaKnown RBP RIP-Chip data5.37□□□□□ -1.55not detected
SSH4YKL124W NIT1P40447 199 aa5.37□□□□□ -1.55
SSH4YKL124W SNF3P10870 884 aa5.36□□□□□ -1.55
SSH4YKL124W EAP1P36041 632 aaKnown RBP5.36□□□□□ -1.55
SSH4YKL124W APL6P46682 809 aa5.36□□□□□ -1.55
SSH4YKL124W PUS6P53294 404 aa5.36□□□□□ -1.55
SSH4YKL124W SPO1P53541 631 aa5.36□□□□□ -1.55
SSH4YKL124W FLO1P32768 1537 aa5.35□□□□□ -1.55
SSH4YKL124W PRS1P32895 427 aaKnown RBP5.35□□□□□ -1.55
SSH4YKL124W RSC30P38781 883 aa5.35□□□□□ -1.55
SSH4YKL124W HAL5P38970 855 aaKnown RBP5.35□□□□□ -1.55
SSH4YKL124W TPO2P53283 614 aa5.35□□□□□ -1.55
SSH4YKL124W NCB2Q92317 146 aa5.35□□□□□ -1.55
SSH4YKL124W RPT3P33298 428 aaKnown RBP5.34□□□□□ -1.55
SSH4YKL124W MOT2P34909 587 aaKnown RBP5.34□□□□□ -1.55
SSH4YKL124W GEF1P37020 779 aa5.34□□□□□ -1.55
SSH4YKL124W YNL193WP53870 558 aa5.34□□□□□ -1.55
SSH4YKL124W IOC2Q12072 812 aa5.34□□□□□ -1.55
SSH4YKL124W RRI2Q12348 645 aa5.34□□□□□ -1.55
SSH4YKL124W CYB2P00175 591 aa5.34□□□□□ -1.56
SSH4YKL124W NPL4P33755 580 aa5.34□□□□□ -1.56
SSH4YKL124W PTK1P36002 662 aaPredicted RBP5.34□□□□□ -1.56
SSH4YKL124W APE3P37302 537 aaKnown RBP5.34□□□□□ -1.56
SSH4YKL124W PNT1P38969 423 aa5.34□□□□□ -1.56
SSH4YKL124W RBA50Q04418 439 aa5.34□□□□□ -1.56
SSH4YKL124W SLA1P32790 1244 aa5.33□□□□□ -1.56
SSH4YKL124W YIR042CP40586 236 aa5.33□□□□□ -1.56
SSH4YKL124W MSH4P40965 878 aaPredicted RBP5.33□□□□□ -1.56
SSH4YKL124W INM2Q05533 292 aa5.33□□□□□ -1.56
SSH4YKL124W RPN7Q06103 429 aaKnown RBP5.33□□□□□ -1.56
SSH4YKL124W AIR2Q12476 344 aaKnown RBP5.33□□□□□ -1.56
SSH4YKL124W RAD53P22216 821 aa5.32□□□□□ -1.56
SSH4YKL124W TPS3P38426 1054 aaKnown RBP5.32□□□□□ -1.56
SSH4YKL124W ILV3P39522 585 aaKnown RBP5.32□□□□□ -1.56
SSH4YKL124W NOP2P40991 618 aaKnown RBP5.32□□□□□ -1.56
SSH4YKL124W NCS6P53088 359 aa5.32□□□□□ -1.56
SSH4YKL124W PCL8Q08966 492 aa5.32□□□□□ -1.56
SSH4YKL124W SAM3Q08986 587 aa5.32□□□□□ -1.56
SSH4YKL124W MDL2P33311 773 aa5.31□□□□□ -1.56
SSH4YKL124W BOI1P38041 980 aaKnown RBP5.31□□□□□ -1.56
SSH4YKL124W KEL1P38853 1164 aaKnown RBP5.31□□□□□ -1.56
SSH4YKL124W POL32P47110 350 aa5.31□□□□□ -1.56
SSH4YKL124W YGL242CP53066 181 aa5.31□□□□□ -1.56
SSH4YKL124W FAR11P53917 953 aa5.31□□□□□ -1.56
SSH4YKL124W PPM2Q08282 695 aa5.31□□□□□ -1.56
SSH4YKL124W PMA1P05030 918 aaKnown RBP5.31□□□□□ -1.56
SSH4YKL124W ADP1P25371 1049 aa5.31□□□□□ -1.56
SSH4YKL124W PIP2P52960 996 aa5.31□□□□□ -1.56
SSH4YKL124W MLC1P53141 149 aa5.31□□□□□ -1.56
SSH4YKL124W SUB1P54000 292 aaKnown RBP5.31□□□□□ -1.56
SSH4YKL124W PUF6Q04373 656 aaKnown RBP5.31□□□□□ -1.56
SSH4YKL124W PFK2P16862 959 aaKnown RBP RIP-Chip data5.3□□□□□ -1.56not detected
SSH4YKL124W ASF1P32447 279 aa5.3□□□□□ -1.56
SSH4YKL124W KTR3P38130 404 aaPredicted RBP5.3□□□□□ -1.56
SSH4YKL124W NMD2P38798 1089 aaKnown RBP5.3□□□□□ -1.56
SSH4YKL124W SLX8P40072 274 aa5.3□□□□□ -1.56
SSH4YKL124W VPS72Q03388 795 aa5.3□□□□□ -1.56
SSH4YKL124W NOT3P06102 836 aaKnown RBP5.29□□□□□ -1.56
SSH4YKL124W KIN1P13185 1064 aa5.29□□□□□ -1.56
SSH4YKL124W RAM2P29703 316 aa5.29□□□□□ -1.56
SSH4YKL124W RTG1P32607 177 aa5.29□□□□□ -1.56
SSH4YKL124W GRX7P38068 203 aa5.29□□□□□ -1.56
SSH4YKL124W ECM21P38167 1117 aaKnown RBP5.29□□□□□ -1.56
SSH4YKL124W IOC3P43596 787 aa5.29□□□□□ -1.56
SSH4YKL124W RTS3P53289 263 aa5.29□□□□□ -1.56
SSH4YKL124W NSG2P53898 299 aa5.29□□□□□ -1.56
SSH4YKL124W RLP24Q07915 199 aaKnown RBP5.29□□□□□ -1.56
SSH4YKL124W PDR18P53756 1333 aa5.29□□□□□ -1.56
SSH4YKL124W MPH3P0CE00 602 aa5.28□□□□□ -1.56
SSH4YKL124W OSH3P38713 996 aaKnown RBP5.28□□□□□ -1.56
SSH4YKL124W SPR3P41901 512 aa5.28□□□□□ -1.56
SSH4YKL124W NET1P47035 1189 aa5.28□□□□□ -1.56
SSH4YKL124W JSN1P47135 1091 aaKnown RBP RIP-Chip data5.28□□□□□ -1.56not detected
SSH4YKL124W ASH1P34233 588 aa5.28□□□□□ -1.56
SSH4YKL124W DCW1P36091 449 aa5.28□□□□□ -1.56
SSH4YKL124W BRN1P38170 754 aa5.28□□□□□ -1.56
SSH4YKL124W ALO1P54783 526 aaKnown RBP5.28□□□□□ -1.56
SSH4YKL124W JIP4Q03361 876 aa5.28□□□□□ -1.56
SSH4YKL124W YLR225CQ05948 407 aaKnown RBP5.28□□□□□ -1.56
SSH4YKL124W MAK11P20484 414 aaKnown RBP5.27□□□□□ -1.57
SSH4YKL124W SDH2P21801 266 aa5.27□□□□□ -1.57
SSH4YKL124W OCT1P35999 772 aa5.27□□□□□ -1.57
SSH4YKL124W SPC42P36094 363 aa5.27□□□□□ -1.57
SSH4YKL124W BDP1P46678 594 aa5.27□□□□□ -1.57
SSH4YKL124W ENP2P48234 707 aaKnown RBP5.27□□□□□ -1.57
SSH4YKL124W KAR5Q04746 504 aa5.27□□□□□ -1.57
SSH4YKL124W TUB2P02557 457 aaKnown RBP5.26□□□□□ -1.57
SSH4YKL124W CDC16P09798 840 aa5.26□□□□□ -1.57
SSH4YKL124W CAB3P36076 571 aa5.26□□□□□ -1.57
SSH4YKL124W YBL028CP38202 106 aa5.26□□□□□ -1.57
SSH4YKL124W CST26P38226 397 aa5.26□□□□□ -1.57
SSH4YKL124W ERG7P38604 731 aa5.26□□□□□ -1.57
SSH4YKL124W ACA1P39970 489 aa5.26□□□□□ -1.57
SSH4YKL124W IRC8P47046 822 aa5.26□□□□□ -1.57
SSH4YKL124W PEX29Q03370 554 aa5.26□□□□□ -1.57
SSH4YKL124W YPL260WQ08977 551 aa5.26□□□□□ -1.57
SSH4YKL124W KEL3Q08979 651 aaPredicted RBP5.26□□□□□ -1.57
SSH4YKL124W NCR1Q12200 1170 aa5.26□□□□□ -1.57
SSH4YKL124W BMT6Q12291 365 aa5.26□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 12 ms