RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W CDC16P09798 840 aa12.15□□□□□ -0.46
UBA4YHR111W MOT2P34909 587 aaKnown RBP12.15□□□□□ -0.46
UBA4YHR111W RSC30P38781 883 aa12.15□□□□□ -0.46
UBA4YHR111W MSH4P40965 878 aaPredicted RBP12.15□□□□□ -0.46
UBA4YHR111W IRC8P47046 822 aa12.15□□□□□ -0.46
UBA4YHR111W FPR3P38911 411 aaKnown RBP12.14□□□□□ -0.47
UBA4YHR111W IOC3P43596 787 aa12.14□□□□□ -0.47
UBA4YHR111W BRE1Q07457 700 aaKnown RBP12.14□□□□□ -0.47
UBA4YHR111W KEL3Q08979 651 aaPredicted RBP12.14□□□□□ -0.47
UBA4YHR111W KIN1P13185 1064 aa12.13□□□□□ -0.47
UBA4YHR111W MRPS35P53292 345 aa12.13□□□□□ -0.47
UBA4YHR111W KAR5Q04746 504 aa12.13□□□□□ -0.47
UBA4YHR111W TUB2P02557 457 aaKnown RBP12.12□□□□□ -0.47
UBA4YHR111W OSH3P38713 996 aaKnown RBP12.12□□□□□ -0.47
UBA4YHR111W ENP2P48234 707 aaKnown RBP12.12□□□□□ -0.47
UBA4YHR111W JIP4Q03361 876 aa12.12□□□□□ -0.47
UBA4YHR111W NKP2Q06162 153 aa12.12□□□□□ -0.47
UBA4YHR111W YDL124WQ07551 312 aaKnown RBP12.12□□□□□ -0.47
UBA4YHR111W ACA1P39970 489 aa12.11□□□□□ -0.47
UBA4YHR111W YPL260WQ08977 551 aa12.11□□□□□ -0.47
UBA4YHR111W SPT21P35209 758 aa12.11□□□□□ -0.47
UBA4YHR111W NCS6P53088 359 aa12.11□□□□□ -0.47
UBA4YHR111W SNU71P53207 620 aaKnown RBP12.11□□□□□ -0.47
UBA4YHR111W KTR1P27810 393 aaKnown RBP12.1□□□□□ -0.47
UBA4YHR111W ASH1P34233 588 aa12.1□□□□□ -0.47
UBA4YHR111W BBC1P47068 1157 aa12.1□□□□□ -0.47
UBA4YHR111W MPH3P0CE00 602 aa12.09□□□□□ -0.47
UBA4YHR111W OCT1P35999 772 aa12.09□□□□□ -0.47
UBA4YHR111W PKH3Q03306 898 aaPredicted RBP12.09□□□□□ -0.47
UBA4YHR111W ECM16Q04217 1267 aaKnown RBP12.09□□□□□ -0.47
UBA4YHR111W TAH18Q12181 623 aa12.09□□□□□ -0.47
UBA4YHR111W CST26P38226 397 aa12.08□□□□□ -0.48
UBA4YHR111W LAM4P38800 1345 aa12.07□□□□□ -0.48
UBA4YHR111W PRE8P23639 250 aa12.07□□□□□ -0.48
UBA4YHR111W COQ1P18900 473 aa12.06□□□□□ -0.48
UBA4YHR111W OPI1P21957 404 aa12.06□□□□□ -0.48
UBA4YHR111W RTS1P38903 757 aa12.06□□□□□ -0.48
UBA4YHR111W STM1P39015 273 aaKnown RBP12.06□□□□□ -0.48
UBA4YHR111W SPR3P41901 512 aa12.06□□□□□ -0.48
UBA4YHR111W NET1P47035 1189 aa12.06□□□□□ -0.48
UBA4YHR111W YHL050CP38721 697 aa12.05□□□□□ -0.48
UBA4YHR111W SLN1P39928 1220 aaPredicted RBP12.05□□□□□ -0.48
UBA4YHR111W LAP2Q10740 671 aa12.05□□□□□ -0.48
UBA4YHR111W SRM1P21827 482 aa12.04□□□□□ -0.48
UBA4YHR111W YDJ1P25491 409 aaKnown RBP12.04□□□□□ -0.48
UBA4YHR111W RRP8P38961 392 aaKnown RBP12.04□□□□□ -0.48
UBA4YHR111W LYS14P40971 790 aa12.04□□□□□ -0.48
UBA4YHR111W MRD1Q06106 887 aaKnown RBP12.04□□□□□ -0.48
UBA4YHR111W SGD1Q06132 899 aa12.04□□□□□ -0.48
UBA4YHR111W FBP1P09201 348 aa12.03□□□□□ -0.48
UBA4YHR111W IXR1P33417 597 aa12.03□□□□□ -0.48
UBA4YHR111W TIF4631P39935 952 aaKnown RBP12.03□□□□□ -0.48
UBA4YHR111W YLR225CQ05948 407 aaKnown RBP12.03□□□□□ -0.48
UBA4YHR111W RAD50P12753 1312 aa12.03□□□□□ -0.48
UBA4YHR111W MCD4P36051 919 aa12.02□□□□□ -0.49
UBA4YHR111W MET1P36150 593 aa12.02□□□□□ -0.49
UBA4YHR111W ERG7P38604 731 aa12.02□□□□□ -0.49
UBA4YHR111W VID27P40157 782 aa12.02□□□□□ -0.49
UBA4YHR111W SUB2Q07478 446 aaKnown RBP12.02□□□□□ -0.49
UBA4YHR111W RIM20Q12033 661 aa12.02□□□□□ -0.49
UBA4YHR111W RAD61Q99359 647 aa12.02□□□□□ -0.49
UBA4YHR111W CHO2P05374 869 aaKnown RBP12.01□□□□□ -0.49
UBA4YHR111W KRS1P15180 591 aaKnown RBP12.01□□□□□ -0.49
UBA4YHR111W VAB2P40003 282 aa12.01□□□□□ -0.49
UBA4YHR111W SKG3Q06315 1026 aa12.01□□□□□ -0.49
UBA4YHR111W CFT2Q12102 859 aaPredicted RBP12.01□□□□□ -0.49
UBA4YHR111W ERG12P07277 443 aa12□□□□□ -0.49
UBA4YHR111W VAS1P07806 1104 aaKnown RBP12□□□□□ -0.49
UBA4YHR111W YJL007CP47080 104 aa12□□□□□ -0.49
UBA4YHR111W SDH2P21801 266 aa11.99□□□□□ -0.49
UBA4YHR111W RPS15Q01855 142 aaKnown RBP11.99□□□□□ -0.49
UBA4YHR111W SPB4P25808 606 aaPredicted RBP11.98□□□□□ -0.49
UBA4YHR111W CDC60P26637 1090 aaKnown RBP11.97□□□□□ -0.49
UBA4YHR111W CHS3P29465 1165 aa11.97□□□□□ -0.49
UBA4YHR111W AAP1P37898 856 aaKnown RBP11.97□□□□□ -0.49
UBA4YHR111W UFD2P54860 961 aa11.97□□□□□ -0.49
UBA4YHR111W SSF2Q12153 453 aaPredicted RBP11.97□□□□□ -0.49
UBA4YHR111W PER1P25625 357 aa11.96□□□□□ -0.49
UBA4YHR111W VPS8P39702 1274 aa11.96□□□□□ -0.49
UBA4YHR111W YML037CQ03703 340 aa11.96□□□□□ -0.49
UBA4YHR111W FPR4Q06205 392 aaPredicted RBP11.96□□□□□ -0.49
UBA4YHR111W UBX5Q06682 500 aa11.95□□□□□ -0.5
UBA4YHR111W TY3A-GQ12173 290 aa11.95□□□□□ -0.5
UBA4YHR111W TY3A-IQ99219 290 aa11.95□□□□□ -0.5
UBA4YHR111W PRO3P32263 286 aaKnown RBP11.94□□□□□ -0.5
UBA4YHR111W SKI2P35207 1287 aaKnown RBP RIP-Chip data11.94□□□□□ -0.5not detected
UBA4YHR111W ATG1P53104 897 aa11.94□□□□□ -0.5
UBA4YHR111W TUS1Q06412 1307 aa11.94□□□□□ -0.5
UBA4YHR111W SRS2P12954 1174 aa11.93□□□□□ -0.5
UBA4YHR111W SAM2P19358 384 aaKnown RBP11.93□□□□□ -0.5
UBA4YHR111W MYO3P36006 1272 aa11.93□□□□□ -0.5
UBA4YHR111W ACE2P21192 770 aa11.92□□□□□ -0.5
UBA4YHR111W RIT1P23796 513 aa11.92□□□□□ -0.5
UBA4YHR111W ANP1P32629 500 aa11.92□□□□□ -0.5
UBA4YHR111W SOL4P53315 255 aa11.92□□□□□ -0.5
UBA4YHR111W SPN1Q06505 410 aaPredicted RBP11.92□□□□□ -0.5
UBA4YHR111W DIT2P21595 489 aa11.91□□□□□ -0.5
UBA4YHR111W BRN1P38170 754 aa11.91□□□□□ -0.5
UBA4YHR111W VMA2P16140 517 aaKnown RBP11.9□□□□□ -0.5
UBA4YHR111W CRG1P38892 291 aaRIP-Chip data11.9□□□□□ -0.5not detected
Retrieved 100 of 5,963 RNA–protein pairs in 19.6 ms