RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W ELM1P32801 640 aa9.06□□□□□ -0.96
UFD1YGR048W TPS3P38426 1054 aaKnown RBP9.06□□□□□ -0.96
UFD1YGR048W NKP2Q06162 153 aa9.06□□□□□ -0.96
UFD1YGR048W THI22Q06490 572 aa9.06□□□□□ -0.96
UFD1YGR048W ERF2Q06551 359 aa9.06□□□□□ -0.96
UFD1YGR048W YOR389WQ08912 624 aa9.06□□□□□ -0.96
UFD1YGR048W TY1B-JR2P47100 1755 aaKnown RBP9.06□□□□□ -0.96
UFD1YGR048W TY1B-ER2Q03619 1755 aa9.06□□□□□ -0.96
UFD1YGR048W TY1B-MR1Q04214 1755 aa9.06□□□□□ -0.96
UFD1YGR048W TY1B-MR2Q04670 1755 aaKnown RBP9.06□□□□□ -0.96
UFD1YGR048W TY1B-LR1Q12088 1755 aaKnown RBP9.06□□□□□ -0.96
UFD1YGR048W TY1B-NL1Q12112 1755 aa9.06□□□□□ -0.96
UFD1YGR048W TY1B-GR1Q12141 1755 aa9.06□□□□□ -0.96
UFD1YGR048W TY1B-BLQ12490 1755 aa9.06□□□□□ -0.96
UFD1YGR048W SPE2P21182 396 aa9.05□□□□□ -0.96
UFD1YGR048W BRN1P38170 754 aa9.05□□□□□ -0.96
UFD1YGR048W SPO19Q03029 223 aa9.05□□□□□ -0.96
UFD1YGR048W IML1P47170 1584 aa9.04□□□□□ -0.96
UFD1YGR048W STE11P23561 717 aa9.04□□□□□ -0.96
UFD1YGR048W NPR3P38742 1146 aa9.04□□□□□ -0.96
UFD1YGR048W NFI1Q12216 726 aa9.04□□□□□ -0.96
UFD1YGR048W TY1B-BRQ12193 1756 aa9.04□□□□□ -0.96
UFD1YGR048W TY1B-GR3Q12316 1755 aa9.04□□□□□ -0.96
UFD1YGR048W TY1B-ORQ92393 1755 aa9.04□□□□□ -0.96
UFD1YGR048W SPO14P36126 1683 aa9.04□□□□□ -0.96
UFD1YGR048W BNR1P40450 1375 aa9.03□□□□□ -0.96
UFD1YGR048W SUP35P05453 685 aaKnown RBP9.03□□□□□ -0.96
UFD1YGR048W RAD16P31244 790 aa9.03□□□□□ -0.96
UFD1YGR048W CCT5P40413 562 aaKnown RBP9.03□□□□□ -0.96
UFD1YGR048W UBX2Q04228 584 aa9.03□□□□□ -0.96
UFD1YGR048W ATE1P16639 503 aa9.02□□□□□ -0.97
UFD1YGR048W PRD1P25375 712 aa9.02□□□□□ -0.97
UFD1YGR048W YME2P32843 850 aa9.02□□□□□ -0.97
UFD1YGR048W TTI1P36097 1038 aa9.02□□□□□ -0.97
UFD1YGR048W RFC5P38251 354 aa9.02□□□□□ -0.97
UFD1YGR048W RGD1P38339 666 aa9.02□□□□□ -0.97
UFD1YGR048W PEA2P40091 420 aa9.02□□□□□ -0.97
UFD1YGR048W SEC26P41810 973 aaKnown RBP9.02□□□□□ -0.97
UFD1YGR048W STE20Q03497 939 aaKnown RBP9.02□□□□□ -0.97
UFD1YGR048W AOS1Q06624 347 aa9.02□□□□□ -0.97
UFD1YGR048W NOP56Q12460 504 aaKnown RBP RIP-Chip data9.02□□□□□ -0.97not detected
UFD1YGR048W PDI1P17967 522 aaKnown RBP9.01□□□□□ -0.97
UFD1YGR048W CSE4P36012 229 aa9.01□□□□□ -0.97
UFD1YGR048W HXT13P39924 564 aa9.01□□□□□ -0.97
UFD1YGR048W MPH1P40562 993 aa9.01□□□□□ -0.97
UFD1YGR048W CTH1P47976 325 aa9.01□□□□□ -0.97
UFD1YGR048W OMS1Q06668 471 aa9.01□□□□□ -0.97
UFD1YGR048W ATG9Q12142 997 aa9.01□□□□□ -0.97
UFD1YGR048W RRP1P35178 278 aaPredicted RBP9□□□□□ -0.97
UFD1YGR048W RRN7P40992 514 aa9□□□□□ -0.97
UFD1YGR048W MRX12P47084 519 aa9□□□□□ -0.97
UFD1YGR048W ARO80Q04052 950 aa9□□□□□ -0.97
UFD1YGR048W TY1B-AO13527 1196 aaKnown RBP8.99□□□□□ -0.97
UFD1YGR048W SPT16P32558 1035 aaKnown RBP8.99□□□□□ -0.97
UFD1YGR048W GLC3P32775 704 aa8.99□□□□□ -0.97
UFD1YGR048W SIT1P39980 628 aa8.99□□□□□ -0.97
UFD1YGR048W NHA1Q99271 985 aa8.99□□□□□ -0.97
UFD1YGR048W RPO21P04050 1733 aaKnown RBP8.99□□□□□ -0.97
UFD1YGR048W DNF3Q12674 1656 aa8.98□□□□□ -0.97
UFD1YGR048W TRL1P09880 827 aaKnown RBP8.98□□□□□ -0.97
UFD1YGR048W AMS1P22855 1083 aa8.98□□□□□ -0.97
UFD1YGR048W NUF2P33895 451 aa8.98□□□□□ -0.97
UFD1YGR048W SKI2P35207 1287 aaKnown RBP RIP-Chip data8.98□□□□□ -0.97not detected
UFD1YGR048W MUD2P36084 527 aaKnown RBP8.98□□□□□ -0.97
UFD1YGR048W HEL1P36113 551 aa8.98□□□□□ -0.97
UFD1YGR048W NIS1P53939 407 aa8.98□□□□□ -0.97
UFD1YGR048W HOT1Q03213 719 aa8.98□□□□□ -0.97
UFD1YGR048W INP2Q03824 705 aa8.98□□□□□ -0.97
UFD1YGR048W SMC6Q12749 1114 aa8.98□□□□□ -0.97
UFD1YGR048W TY4B-PA0A0B7P3V8 1104 aa8.97□□□□□ -0.97
UFD1YGR048W PHO87P25360 923 aa8.97□□□□□ -0.97
UFD1YGR048W MRF1P30775 413 aaPredicted RBP8.97□□□□□ -0.97
UFD1YGR048W CDC11P32458 415 aa8.97□□□□□ -0.97
UFD1YGR048W TOM71P38825 639 aaKnown RBP8.97□□□□□ -0.97
UFD1YGR048W SPT8P38915 602 aa8.97□□□□□ -0.97
UFD1YGR048W ALD2P47771 506 aa8.97□□□□□ -0.97
UFD1YGR048W RIA1P53893 1110 aa8.97□□□□□ -0.97
UFD1YGR048W YDR338CQ05497 695 aa8.97□□□□□ -0.97
UFD1YGR048W LCB5Q06147 687 aaKnown RBP8.97□□□□□ -0.97
UFD1YGR048W ARR1Q06596 294 aa8.97□□□□□ -0.97
UFD1YGR048W CMS1Q07897 291 aaKnown RBP8.97□□□□□ -0.97
UFD1YGR048W EXO84P38261 753 aa8.96□□□□□ -0.98
UFD1YGR048W YJR142WP47173 342 aa8.96□□□□□ -0.98
UFD1YGR048W SNU71P53207 620 aaKnown RBP8.96□□□□□ -0.98
UFD1YGR048W ATF2P53296 535 aa8.96□□□□□ -0.98
UFD1YGR048W HXT17P53631 564 aa8.96□□□□□ -0.98
UFD1YGR048W SRC1Q03707 834 aa8.96□□□□□ -0.98
UFD1YGR048W GGA1Q06336 557 aa8.96□□□□□ -0.98
UFD1YGR048W RTT109Q07794 436 aa8.96□□□□□ -0.98
UFD1YGR048W HIF1Q12373 385 aa8.96□□□□□ -0.98
UFD1YGR048W TRS33Q99394 268 aa8.96□□□□□ -0.98
UFD1YGR048W CHC1P22137 1653 aaKnown RBP8.96□□□□□ -0.98
UFD1YGR048W NUP192P47054 1683 aa8.95□□□□□ -0.98
UFD1YGR048W USO1P25386 1790 aa8.95□□□□□ -0.98
UFD1YGR048W INP52P50942 1183 aa8.95□□□□□ -0.98
UFD1YGR048W RRB1Q04225 511 aaKnown RBP8.95□□□□□ -0.98
UFD1YGR048W YEL077CQ3E7X8 1277 aa8.95□□□□□ -0.98
UFD1YGR048W TY4A-HQ6Q5P6 413 aa8.95□□□□□ -0.98
UFD1YGR048W DUR1,2P32528 1835 aaKnown RBP8.95□□□□□ -0.98
UFD1YGR048W SWI1P09547 1314 aa8.95□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 96.8 ms