RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 IQSEC2Q5JU85 1478 aa16.48■□□□□ 0.23
CCDC88A-214ENST00000621814 ELL2O00472 640 aaPredicted RBP16.48■□□□□ 0.23
CCDC88A-214ENST00000621814 THUMPD2Q9BTF0 503 aaKnown RBP16.47■□□□□ 0.23
CCDC88A-214ENST00000621814 USP19O94966 1318 aa16.47■□□□□ 0.23
CCDC88A-214ENST00000621814 UPF2Q9HAU5 1272 aaKnown RBP16.47■□□□□ 0.23
CCDC88A-214ENST00000621814 NSD2O96028 1365 aa16.47■□□□□ 0.23
CCDC88A-214ENST00000621814 PUS7Q96PZ0 661 aaKnown RBP16.47■□□□□ 0.23
CCDC88A-214ENST00000621814 ABCC11Q96J66 1382 aa16.46■□□□□ 0.23
CCDC88A-214ENST00000621814 PRKAR2BP31323 418 aa16.46■□□□□ 0.23
CCDC88A-214ENST00000621814 GSE1Q14687 1217 aa16.46■□□□□ 0.23
CCDC88A-214ENST00000621814 CFAP74Q9C0B2 1584 aa16.45■□□□□ 0.22
CCDC88A-214ENST00000621814 YTHDC2Q9H6S0 1430 aaKnown RBP16.45■□□□□ 0.22
CCDC88A-214ENST00000621814 ATAD2Q6PL18 1390 aa16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 ZC3H13Q5T200 1668 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 DIP2CQ9Y2E4 1556 aa16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 TMEM57Q8N5G2 664 aa16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 NEO1Q92859 1461 aa16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 ATF7IPQ6VMQ6 1270 aa16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 ZRANB1Q9UGI0 708 aa16.44■□□□□ 0.22
CCDC88A-214ENST00000621814 NCKAP5LQ9HCH0 1330 aa16.43■□□□□ 0.22
CCDC88A-214ENST00000621814 ARHGEF28Q8N1W1 1705 aaKnown RBP16.43■□□□□ 0.22
CCDC88A-214ENST00000621814 MFAP1P55081 439 aaKnown RBP16.43■□□□□ 0.22
CCDC88A-214ENST00000621814 BECN1Q14457 450 aa16.42■□□□□ 0.22
CCDC88A-214ENST00000621814 EMILIN1Q9Y6C2 1016 aa16.42■□□□□ 0.22
CCDC88A-214ENST00000621814 PIK3C2BO00750 1634 aa16.42■□□□□ 0.22
CCDC88A-214ENST00000621814 TXNDC2Q86VQ3 553 aa16.42■□□□□ 0.22
CCDC88A-214ENST00000621814 PHACTR3Q96KR7 559 aa16.42■□□□□ 0.22
CCDC88A-214ENST00000621814 NUTM2FA1L443 756 aa16.41■□□□□ 0.22
CCDC88A-214ENST00000621814 POLKQ9UBT6 870 aa16.41■□□□□ 0.22
CCDC88A-214ENST00000621814 DDX19BQ9UMR2 479 aa16.4■□□□□ 0.22
CCDC88A-214ENST00000621814 NME9Q86XW9 330 aa16.4■□□□□ 0.22
CCDC88A-214ENST00000621814 BRPF3Q9ULD4 1205 aa16.39■□□□□ 0.21
CCDC88A-214ENST00000621814 PTPRMP28827 1452 aa16.39■□□□□ 0.21
CCDC88A-214ENST00000621814 ARHGAP31Q2M1Z3 1444 aa16.39■□□□□ 0.21
CCDC88A-214ENST00000621814 RRS1Q15050 365 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-214ENST00000621814 PLPPR3Q6T4P5 718 aa16.39■□□□□ 0.21
CCDC88A-214ENST00000621814 C1orf115Q9H7X2 142 aa16.39■□□□□ 0.21
CCDC88A-214ENST00000621814 AAMPQ13685 434 aa16.38■□□□□ 0.21
CCDC88A-214ENST00000621814 PNNQ9H307 717 aaKnown RBP16.38■□□□□ 0.21
CCDC88A-214ENST00000621814 SOX12O15370 315 aa16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 ARXQ96QS3 562 aa16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 LNPKQ9C0E8 428 aa16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 ESF1Q9H501 851 aaKnown RBP16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 MYO5BQ9ULV0 1848 aa16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 FCHSD2O94868 740 aa16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 CD163L1Q9NR16 1453 aa16.37■□□□□ 0.21
CCDC88A-214ENST00000621814 IPO8O15397 1037 aaKnown RBP16.36■□□□□ 0.21
CCDC88A-214ENST00000621814 CT47B1P0C2W7 299 aaPredicted RBP16.36■□□□□ 0.21
CCDC88A-214ENST00000621814 TSPYL6Q8N831 410 aa16.36■□□□□ 0.21
CCDC88A-214ENST00000621814 TBC1D32Q96NH3 1257 aa16.35■□□□□ 0.21
CCDC88A-214ENST00000621814 RSPH6AQ9H0K4 717 aa16.35■□□□□ 0.21
CCDC88A-214ENST00000621814 USP32Q8NFA0 1604 aa16.35■□□□□ 0.21
CCDC88A-214ENST00000621814 ZFYVE9O95405 1425 aa16.35■□□□□ 0.21
CCDC88A-214ENST00000621814 DCTN1Q14203 1278 aa16.35■□□□□ 0.21
CCDC88A-214ENST00000621814 TBC1D2Q9BYX2 928 aa16.35■□□□□ 0.21
CCDC88A-214ENST00000621814 FAM83GA6ND36 823 aa16.34■□□□□ 0.21
CCDC88A-214ENST00000621814 C22orf23Q9BZE7 217 aa16.33■□□□□ 0.2
CCDC88A-214ENST00000621814 ZBTB40Q9NUA8 1239 aa16.33■□□□□ 0.2
CCDC88A-214ENST00000621814 KIF16BQ96L93 1317 aa16.33■□□□□ 0.2
CCDC88A-214ENST00000621814 TMEM131LA2VDJ0 1609 aa16.32■□□□□ 0.2
CCDC88A-214ENST00000621814 COL3A1P02461 1466 aaPredicted RBP16.32■□□□□ 0.2
CCDC88A-214ENST00000621814 ALKQ9UM73 1620 aa16.32■□□□□ 0.2
CCDC88A-214ENST00000621814 ANKRD45Q5TZF3 282 aa16.32■□□□□ 0.2
CCDC88A-214ENST00000621814 WASLO00401 505 aaPredicted RBP16.31■□□□□ 0.2
CCDC88A-214ENST00000621814 HDAC1Q13547 482 aaPredicted RBP16.31■□□□□ 0.2
CCDC88A-214ENST00000621814 NFE2L2Q16236 605 aa16.31■□□□□ 0.2
CCDC88A-214ENST00000621814 IL16Q14005 1332 aa16.31■□□□□ 0.2
CCDC88A-214ENST00000621814 NUDT16Q96DE0 195 aaKnown RBP16.31■□□□□ 0.2
CCDC88A-214ENST00000621814 COG3Q96JB2 828 aa16.31■□□□□ 0.2
CCDC88A-214ENST00000621814 NLRP1Q9C000 1473 aa16.3■□□□□ 0.2
CCDC88A-214ENST00000621814 NCBP3Q53F19 620 aaKnown RBP16.3■□□□□ 0.2
CCDC88A-214ENST00000621814 PREX1Q8TCU6 1659 aa16.3■□□□□ 0.2
CCDC88A-214ENST00000621814 RICTORQ6R327 1708 aa16.3■□□□□ 0.2
CCDC88A-214ENST00000621814 MBIPQ9NS73 344 aa16.3■□□□□ 0.2
CCDC88A-214ENST00000621814 RIMS2Q9UQ26 1411 aa16.29■□□□□ 0.2
CCDC88A-214ENST00000621814 ADGRB2O60241 1585 aa16.29■□□□□ 0.2
CCDC88A-214ENST00000621814 ARHGEF40Q8TER5 1519 aa16.29■□□□□ 0.2
CCDC88A-214ENST00000621814 VAMP4O75379 141 aa16.29■□□□□ 0.2
CCDC88A-214ENST00000621814 PNPLA6Q8IY17 1366 aa16.29■□□□□ 0.2
CCDC88A-214ENST00000621814 PPIP5K1Q6PFW1 1433 aa16.28■□□□□ 0.2
CCDC88A-214ENST00000621814 METP08581 1390 aa16.28■□□□□ 0.2
CCDC88A-214ENST00000621814 IL13P35225 146 aa16.27■□□□□ 0.2
CCDC88A-214ENST00000621814 SMC5Q8IY18 1101 aa16.27■□□□□ 0.2
CCDC88A-214ENST00000621814 C8orf58Q8NAV2 365 aa16.27■□□□□ 0.2
CCDC88A-214ENST00000621814 TWISTNBQ3B726 338 aaPredicted RBP16.27■□□□□ 0.2
CCDC88A-214ENST00000621814 ALDH1L2Q3SY69 923 aa16.27■□□□□ 0.2
CCDC88A-214ENST00000621814 TSPOAP1O95153 1857 aa16.27■□□□□ 0.19
CCDC88A-214ENST00000621814 GNAI1P63096 354 aa16.26■□□□□ 0.19
CCDC88A-214ENST00000621814 CHD1LQ86WJ1 897 aa16.26■□□□□ 0.19
CCDC88A-214ENST00000621814 GZF1Q9H116 711 aaPredicted RBP16.26■□□□□ 0.19
CCDC88A-214ENST00000621814 AEBP1Q8IUX7 1158 aa16.26■□□□□ 0.19
CCDC88A-214ENST00000621814 CCDC61Q9Y6R9 512 aa16.25■□□□□ 0.19
CCDC88A-214ENST00000621814 LRRC7Q96NW7 1537 aa16.25■□□□□ 0.19
CCDC88A-214ENST00000621814 NUCB1Q02818 461 aa16.25■□□□□ 0.19
CCDC88A-214ENST00000621814 KRT24Q2M2I5 525 aa16.25■□□□□ 0.19
CCDC88A-214ENST00000621814 MRPL50Q8N5N7 158 aaKnown RBP16.25■□□□□ 0.19
CCDC88A-214ENST00000621814 ZBTB7BO15156 539 aaPredicted RBP16.25■□□□□ 0.19
CCDC88A-214ENST00000621814 APBB1O00213 710 aa16.24■□□□□ 0.19
CCDC88A-214ENST00000621814 A2ML1A8K2U0 1454 aa16.24■□□□□ 0.19
CCDC88A-214ENST00000621814 SULT6B1Q6IMI4 303 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms