RNA–Protein interactions for RNA: ENST00000588860.5

SMAD4-206, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-206ENST00000588860 ADAMTS13Q76LX8 1427 aa11.76□□□□□ -0.53
SMAD4-206ENST00000588860 NEFLP07196 543 aa11.75□□□□□ -0.53
SMAD4-206ENST00000588860 WAPLQ7Z5K2 1190 aa11.75□□□□□ -0.53
SMAD4-206ENST00000588860 EID1Q9Y6B2 187 aa11.75□□□□□ -0.53
SMAD4-206ENST00000588860 SHPRHQ149N8 1683 aa11.75□□□□□ -0.53
SMAD4-206ENST00000588860 LTKP29376 864 aa11.74□□□□□ -0.53
SMAD4-206ENST00000588860 TXNDC2Q86VQ3 553 aa11.74□□□□□ -0.53
SMAD4-206ENST00000588860 CDK19Q9BWU1 502 aa11.74□□□□□ -0.53
SMAD4-206ENST00000588860 SUPT16HQ9Y5B9 1047 aaKnown RBP11.74□□□□□ -0.53
SMAD4-206ENST00000588860 INSRP06213 1382 aa11.74□□□□□ -0.53
SMAD4-206ENST00000588860 FAM135BQ49AJ0 1406 aa11.74□□□□□ -0.53
SMAD4-206ENST00000588860 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.74□□□□□ -0.53
SMAD4-206ENST00000588860 SENP3-EIF4A1A0A087X0R7 540 aa11.73□□□□□ -0.53
SMAD4-206ENST00000588860 A0A1W2PP64 1363 aa11.73□□□□□ -0.53
SMAD4-206ENST00000588860 ADGRB2O60241 1585 aa11.73□□□□□ -0.53
SMAD4-206ENST00000588860 CGNL1Q0VF96 1302 aa11.73□□□□□ -0.53
SMAD4-206ENST00000588860 MON2Q7Z3U7 1717 aa11.73□□□□□ -0.53
SMAD4-206ENST00000588860 SMG6Q86US8 1419 aaKnown RBP11.73□□□□□ -0.53
SMAD4-206ENST00000588860 TOPAZ1Q8N9V7 1692 aa11.72□□□□□ -0.53
SMAD4-206ENST00000588860 MED14O60244 1454 aa11.72□□□□□ -0.53
SMAD4-206ENST00000588860 CD163L1Q9NR16 1453 aa11.72□□□□□ -0.53
SMAD4-206ENST00000588860 NSD2O96028 1365 aa11.72□□□□□ -0.53
SMAD4-206ENST00000588860 WDR43Q15061 677 aaKnown RBP eCLIP11.72□□□□□ -0.53
SMAD4-206ENST00000588860 LHX8Q68G74 356 aa11.72□□□□□ -0.53
SMAD4-206ENST00000588860 MORC1Q86VD1 984 aa11.72□□□□□ -0.53
SMAD4-206ENST00000588860 XRN1Q8IZH2 1706 aaKnown RBP11.72□□□□□ -0.53
SMAD4-206ENST00000588860 ATP7BP35670 1465 aa11.71□□□□□ -0.53
SMAD4-206ENST00000588860 FKBP8Q14318 412 aa11.71□□□□□ -0.53
SMAD4-206ENST00000588860 POTEAQ6S8J7 498 aa11.71□□□□□ -0.53
SMAD4-206ENST00000588860 THEMISQ8N1K5 641 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-206ENST00000588860 SIRT1Q96EB6 747 aa11.71□□□□□ -0.53
SMAD4-206ENST00000588860 RGPD8O14715 1765 aaPredicted RBP11.7□□□□□ -0.54
SMAD4-206ENST00000588860 CHADLQ6NUI6 762 aa11.7□□□□□ -0.54
SMAD4-206ENST00000588860 TERF2IPQ9NYB0 399 aa11.7□□□□□ -0.54
SMAD4-206ENST00000588860 CDC42BPGQ6DT37 1551 aa11.7□□□□□ -0.54
SMAD4-206ENST00000588860 ROBO2Q9HCK4 1378 aa11.69□□□□□ -0.54
SMAD4-206ENST00000588860 PRR29P0C7W0 189 aa11.69□□□□□ -0.54
SMAD4-206ENST00000588860 HDGFL2Q7Z4V5 671 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-206ENST00000588860 CHD2O14647 1828 aaKnown RBP11.69□□□□□ -0.54
SMAD4-206ENST00000588860 PTPRUQ92729 1446 aa11.69□□□□□ -0.54
SMAD4-206ENST00000588860 MAP2P11137 1827 aaKnown RBP11.68□□□□□ -0.54
SMAD4-206ENST00000588860 WASLO00401 505 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-206ENST00000588860 TNNT2P45379 298 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-206ENST00000588860 SLC26A8Q96RN1 970 aa11.68□□□□□ -0.54
SMAD4-206ENST00000588860 NUDCQ9Y266 331 aa11.68□□□□□ -0.54
SMAD4-206ENST00000588860 PPIP5K1Q6PFW1 1433 aa11.68□□□□□ -0.54
SMAD4-206ENST00000588860 POLR3AO14802 1390 aaPredicted RBP11.67□□□□□ -0.54
SMAD4-206ENST00000588860 ADAMTS8Q9UP79 889 aa11.67□□□□□ -0.54
SMAD4-206ENST00000588860 CABP1Q9NZU7 370 aa11.66□□□□□ -0.54
SMAD4-206ENST00000588860 TBX22Q9Y458 520 aa11.66□□□□□ -0.54
SMAD4-206ENST00000588860 SALL2Q9Y467 1007 aaPredicted RBP11.66□□□□□ -0.54
SMAD4-206ENST00000588860 PTCH1Q13635 1447 aa11.66□□□□□ -0.54
SMAD4-206ENST00000588860 NRKQ7Z2Y5 1582 aa11.65□□□□□ -0.54
SMAD4-206ENST00000588860 FMN2Q9NZ56 1722 aa11.64□□□□□ -0.55
SMAD4-206ENST00000588860 NUDT16Q96DE0 195 aaKnown RBP11.64□□□□□ -0.55
SMAD4-206ENST00000588860 GGNBP2Q9H3C7 697 aa11.64□□□□□ -0.55
SMAD4-206ENST00000588860 PDE3BQ13370 1112 aa11.63□□□□□ -0.55
SMAD4-206ENST00000588860 CFAP53Q96M91 514 aa11.63□□□□□ -0.55
SMAD4-206ENST00000588860 AMOTL2Q9Y2J4 779 aa11.63□□□□□ -0.55
SMAD4-206ENST00000588860 NALCNQ8IZF0 1738 aa11.63□□□□□ -0.55
SMAD4-206ENST00000588860 CPSF1Q10570 1443 aaKnown RBP11.62□□□□□ -0.55
SMAD4-206ENST00000588860 EDC4Q6P2E9 1401 aaKnown RBP11.62□□□□□ -0.55
SMAD4-206ENST00000588860 IRX6P78412 446 aaPredicted RBP11.62□□□□□ -0.55
SMAD4-206ENST00000588860 CCDC146Q8IYE0 955 aa11.62□□□□□ -0.55
SMAD4-206ENST00000588860 FYB1O15117 783 aa11.61□□□□□ -0.55
SMAD4-206ENST00000588860 MTHFSP49914 203 aa11.61□□□□□ -0.55
SMAD4-206ENST00000588860 UPF1Q92900 1129 aaKnown RBP eCLIP11.61□□□□□ -0.55
SMAD4-206ENST00000588860 PIK3R4Q99570 1358 aa11.61□□□□□ -0.55
SMAD4-206ENST00000588860 PRR36Q9H6K5 1346 aa11.6□□□□□ -0.55
SMAD4-206ENST00000588860 COL3A1P02461 1466 aaPredicted RBP11.6□□□□□ -0.55
SMAD4-206ENST00000588860 ANKLE2Q86XL3 938 aa11.6□□□□□ -0.55
SMAD4-206ENST00000588860 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.6□□□□□ -0.55
SMAD4-206ENST00000588860 CCDC61Q9Y6R9 512 aa11.6□□□□□ -0.55
SMAD4-206ENST00000588860 NKTRP30414 1462 aaKnown RBP11.59□□□□□ -0.55
SMAD4-206ENST00000588860 CLCN6P51797 869 aa11.59□□□□□ -0.55
SMAD4-206ENST00000588860 CDCA7LQ96GN5 454 aa11.58□□□□□ -0.56
SMAD4-206ENST00000588860 NPHP4O75161 1426 aaPredicted RBP11.57□□□□□ -0.56
SMAD4-206ENST00000588860 NUTM2FA1L443 756 aa11.56□□□□□ -0.56
SMAD4-206ENST00000588860 APAF1O14727 1248 aa11.56□□□□□ -0.56
SMAD4-206ENST00000588860 KCNA6P17658 529 aa11.56□□□□□ -0.56
SMAD4-206ENST00000588860 NME9Q86XW9 330 aa11.56□□□□□ -0.56
SMAD4-206ENST00000588860 RNF123Q5XPI4 1314 aa11.56□□□□□ -0.56
SMAD4-206ENST00000588860 NWD1Q149M9 1564 aa11.55□□□□□ -0.56
SMAD4-206ENST00000588860 ERICH6BQ5W0A0 696 aa11.55□□□□□ -0.56
SMAD4-206ENST00000588860 PELP1Q8IZL8 1130 aaKnown RBP11.55□□□□□ -0.56
SMAD4-206ENST00000588860 RUNDC1Q96C34 613 aa11.55□□□□□ -0.56
SMAD4-206ENST00000588860 ZNF521Q96K83 1311 aa11.55□□□□□ -0.56
SMAD4-206ENST00000588860 USP6P35125 1406 aa11.54□□□□□ -0.56
SMAD4-206ENST00000588860 ANKARQ7Z5J8 1434 aa11.54□□□□□ -0.56
SMAD4-206ENST00000588860 PLEKHG3A1L390 1219 aa11.54□□□□□ -0.56
SMAD4-206ENST00000588860 CD44P16070 742 aaKnown RBP11.54□□□□□ -0.56
SMAD4-206ENST00000588860 RCAN3Q9UKA8 241 aa11.54□□□□□ -0.56
SMAD4-206ENST00000588860 FARP1Q9Y4F1 1045 aaPredicted RBP11.54□□□□□ -0.56
SMAD4-206ENST00000588860 ACEP12821 1306 aa11.54□□□□□ -0.56
SMAD4-206ENST00000588860 PIK3C2AO00443 1686 aa11.53□□□□□ -0.56
SMAD4-206ENST00000588860 CDK12Q9NYV4 1490 aaPredicted RBP11.53□□□□□ -0.56
SMAD4-206ENST00000588860 MARF1Q9Y4F3 1742 aaKnown RBP11.53□□□□□ -0.56
SMAD4-206ENST00000588860 U2AF1L5P0DN76 240 aaPredicted RBP11.53□□□□□ -0.56
SMAD4-206ENST00000588860 U2AF1Q01081 240 aaKnown RBP eCLIP11.53□□□□□ -0.56
SMAD4-206ENST00000588860 GOLGA2Q08379 1002 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms