RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 NSD2O96028 1365 aa21.56■■□□□ 1.04
VPS53-215ENST00000573028 THUMPD2Q9BTF0 503 aaKnown RBP21.55■■□□□ 1.04
VPS53-215ENST00000573028 LMTK2Q8IWU2 1503 aa21.54■■□□□ 1.04
VPS53-215ENST00000573028 PPLO60437 1756 aa21.54■■□□□ 1.04
VPS53-215ENST00000573028 GLI2P10070 1586 aa21.54■■□□□ 1.04
VPS53-215ENST00000573028 CT47B1P0C2W7 299 aaPredicted RBP21.54■■□□□ 1.04
VPS53-215ENST00000573028 HDAC1Q13547 482 aaPredicted RBP21.54■■□□□ 1.04
VPS53-215ENST00000573028 HSCBQ8IWL3 235 aa21.54■■□□□ 1.04
VPS53-215ENST00000573028 C1orf115Q9H7X2 142 aa21.54■■□□□ 1.04
VPS53-215ENST00000573028 MCM4P33991 863 aa21.53■■□□□ 1.04
VPS53-215ENST00000573028 HMOX1P09601 288 aa21.53■■□□□ 1.04
VPS53-215ENST00000573028 IPO8O15397 1037 aaKnown RBP21.53■■□□□ 1.04
VPS53-215ENST00000573028 CABP1Q9NZU7 370 aa21.53■■□□□ 1.04
VPS53-215ENST00000573028 PRKAR2BP31323 418 aa21.51■■□□□ 1.03
VPS53-215ENST00000573028 L1TD1Q5T7N2 865 aaKnown RBP21.51■■□□□ 1.03
VPS53-215ENST00000573028 CHMP5Q9NZZ3 219 aa21.51■■□□□ 1.03
VPS53-215ENST00000573028 ABCC11Q96J66 1382 aa21.51■■□□□ 1.03
VPS53-215ENST00000573028 ZC3H13Q5T200 1668 aaKnown RBP21.51■■□□□ 1.03
VPS53-215ENST00000573028 HDGFL2Q7Z4V5 671 aaPredicted RBP21.51■■□□□ 1.03
VPS53-215ENST00000573028 ZBTB40Q9NUA8 1239 aa21.51■■□□□ 1.03
VPS53-215ENST00000573028 STAG3Q9UJ98 1225 aa21.51■■□□□ 1.03
VPS53-215ENST00000573028 POGZQ7Z3K3 1410 aa21.5■■□□□ 1.03
VPS53-215ENST00000573028 SMC5Q8IY18 1101 aa21.5■■□□□ 1.03
VPS53-215ENST00000573028 FOXD4L1Q9NU39 408 aa21.5■■□□□ 1.03
VPS53-215ENST00000573028 ANKRD45Q5TZF3 282 aa21.5■■□□□ 1.03
VPS53-215ENST00000573028 FAM43AQ8N2R8 423 aa21.5■■□□□ 1.03
VPS53-215ENST00000573028 PUS7Q96PZ0 661 aaKnown RBP21.5■■□□□ 1.03
VPS53-215ENST00000573028 KIF16BQ96L93 1317 aa21.49■■□□□ 1.03
VPS53-215ENST00000573028 GOLGA6L3A6NEY3 463 aa21.49■■□□□ 1.03
VPS53-215ENST00000573028 CDK19Q9BWU1 502 aa21.48■■□□□ 1.03
VPS53-215ENST00000573028 ABCC3O15438 1527 aa21.48■■□□□ 1.03
VPS53-215ENST00000573028 FRMPD1Q5SYB0 1578 aa21.48■■□□□ 1.03
VPS53-215ENST00000573028 ZMYM3Q14202 1370 aa21.47■■□□□ 1.03
VPS53-215ENST00000573028 TRAK2O60296 914 aa21.47■■□□□ 1.03
VPS53-215ENST00000573028 PANK2Q9BZ23 570 aa21.47■■□□□ 1.03
VPS53-215ENST00000573028 HSP90AA1P07900 732 aaKnown RBP21.46■■□□□ 1.03
VPS53-215ENST00000573028 CHD1LQ86WJ1 897 aa21.46■■□□□ 1.03
VPS53-215ENST00000573028 XRCC6P12956 609 aaKnown RBP eCLIP21.45■■□□□ 1.028e-6■■□□□ 13.6
VPS53-215ENST00000573028 FBXO31Q5XUX0 539 aaPredicted RBP21.45■■□□□ 1.02
VPS53-215ENST00000573028 HSP90AB1P08238 724 aaKnown RBP21.45■■□□□ 1.02
VPS53-215ENST00000573028 NCBP3Q53F19 620 aaKnown RBP21.45■■□□□ 1.02
VPS53-215ENST00000573028 USP32Q8NFA0 1604 aa21.45■■□□□ 1.02
VPS53-215ENST00000573028 CAMSAP1Q5T5Y3 1602 aa21.44■■□□□ 1.02
VPS53-215ENST00000573028 NUCB1Q02818 461 aa21.44■■□□□ 1.02
VPS53-215ENST00000573028 PHACTR3Q96KR7 559 aa21.44■■□□□ 1.02
VPS53-215ENST00000573028 PNNQ9H307 717 aaKnown RBP21.44■■□□□ 1.02
VPS53-215ENST00000573028 ATAD2Q6PL18 1390 aa21.44■■□□□ 1.02
VPS53-215ENST00000573028 ARHGEF28Q8N1W1 1705 aaKnown RBP21.44■■□□□ 1.02
VPS53-215ENST00000573028 RRAGDQ9NQL2 400 aaPredicted RBP21.44■■□□□ 1.02
VPS53-215ENST00000573028 IL16Q14005 1332 aa21.43■■□□□ 1.02
VPS53-215ENST00000573028 ADGRB2O60241 1585 aa21.43■■□□□ 1.02
VPS53-215ENST00000573028 TSPYL6Q8N831 410 aa21.43■■□□□ 1.02
VPS53-215ENST00000573028 WAPLQ7Z5K2 1190 aa21.43■■□□□ 1.02
VPS53-215ENST00000573028 MLH3Q9UHC1 1453 aa21.43■■□□□ 1.02
VPS53-215ENST00000573028 NEXMIFQ5QGS0 1516 aa21.42■■□□□ 1.02
VPS53-215ENST00000573028 SLC52A1Q9NWF4 448 aa21.41■■□□□ 1.02
VPS53-215ENST00000573028 FCHSD2O94868 740 aa21.41■■□□□ 1.02
VPS53-215ENST00000573028 HECW2Q9P2P5 1572 aa21.4■■□□□ 1.02
VPS53-215ENST00000573028 AEBP2Q6ZN18 517 aaPredicted RBP21.4■■□□□ 1.02
VPS53-215ENST00000573028 EMILIN1Q9Y6C2 1016 aa21.4■■□□□ 1.02
VPS53-215ENST00000573028 POLKQ9UBT6 870 aa21.4■■□□□ 1.02
VPS53-215ENST00000573028 SIGLEC1Q9BZZ2 1709 aa21.39■■□□□ 1.02
VPS53-215ENST00000573028 PRKCSHP14314 528 aaPredicted RBP21.39■■□□□ 1.01
VPS53-215ENST00000573028 ALDH1L2Q3SY69 923 aa21.39■■□□□ 1.01
VPS53-215ENST00000573028 COL3A1P02461 1466 aaPredicted RBP21.39■■□□□ 1.01
VPS53-215ENST00000573028 RSPH6AQ9H0K4 717 aa21.38■■□□□ 1.01
VPS53-215ENST00000573028 RBM42Q9BTD8 480 aaKnown RBP21.37■■□□□ 1.01
VPS53-215ENST00000573028 YTHDC2Q9H6S0 1430 aaKnown RBP21.37■■□□□ 1.01
VPS53-215ENST00000573028 ZRANB1Q9UGI0 708 aa21.37■■□□□ 1.01
VPS53-215ENST00000573028 ZBTB7BO15156 539 aaPredicted RBP21.36■■□□□ 1.01
VPS53-215ENST00000573028 VAMP4O75379 141 aa21.36■■□□□ 1.01
VPS53-215ENST00000573028 NFE2L2Q16236 605 aa21.35■■□□□ 1.01
VPS53-215ENST00000573028 DCTN1Q14203 1278 aa21.35■■□□□ 1.01
VPS53-215ENST00000573028 FAM83GA6ND36 823 aa21.34■■□□□ 1.01
VPS53-215ENST00000573028 TNPO1Q92973 898 aaKnown RBP21.34■■□□□ 1.01
VPS53-215ENST00000573028 CD2BP2O95400 341 aaKnown RBP21.34■■□□□ 1.01
VPS53-215ENST00000573028 RBM25P49756 843 aaKnown RBP21.34■■□□□ 1.01
VPS53-215ENST00000573028 MRPL50Q8N5N7 158 aaKnown RBP21.34■■□□□ 1.01
VPS53-215ENST00000573028 CD163L1Q9NR16 1453 aa21.34■■□□□ 1.01
VPS53-215ENST00000573028 DDX11L8A8MPP1 907 aa21.34■■□□□ 1.01
VPS53-215ENST00000573028 MBIPQ9NS73 344 aa21.34■■□□□ 1.01
VPS53-215ENST00000573028 APBB1O00213 710 aa21.33■■□□□ 1.01
VPS53-215ENST00000573028 BMP2KLQ5H9B9 411 aa21.33■■□□□ 1.01
VPS53-215ENST00000573028 TBC1D9Q6ZT07 1266 aa21.33■■□□□ 1.01
VPS53-215ENST00000573028 NME9Q86XW9 330 aa21.33■■□□□ 1.01
VPS53-215ENST00000573028 ZNF692Q9BU19 519 aaPredicted RBP21.33■■□□□ 1.01
VPS53-215ENST00000573028 TWISTNBQ3B726 338 aaPredicted RBP21.33■■□□□ 1
VPS53-215ENST00000573028 PTPRMP28827 1452 aa21.33■■□□□ 1
VPS53-215ENST00000573028 PPIP5K1Q6PFW1 1433 aa21.33■■□□□ 1
VPS53-215ENST00000573028 FSD2A1L4K1 749 aa21.33■■□□□ 1
VPS53-215ENST00000573028 RRS1Q15050 365 aaKnown RBP21.33■■□□□ 1
VPS53-215ENST00000573028 YEATS2Q9ULM3 1422 aa21.32■■□□□ 1
VPS53-215ENST00000573028 GNAI1P63096 354 aa21.31■■□□□ 1
VPS53-215ENST00000573028 C8orf58Q8NAV2 365 aa21.31■■□□□ 1
VPS53-215ENST00000573028 SIRT2Q8IXJ6 389 aa21.31■■□□□ 1
VPS53-215ENST00000573028 GCC1Q96CN9 775 aa21.31■■□□□ 1
VPS53-215ENST00000573028 PIK3C2BO00750 1634 aa21.31■■□□□ 1
VPS53-215ENST00000573028 LRRC7Q96NW7 1537 aa21.3■■□□□ 1
VPS53-215ENST00000573028 OSCARQ8IYS5 282 aa21.3■■□□□ 1
VPS53-215ENST00000573028 NCKAP5LQ9HCH0 1330 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms