RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CC2D1BQ5T0F9 858 aaKnown RBP13.65□□□□□ -0.22
CLK3-226ENST00000569406 PIK3C2GO75747 1445 aa13.65□□□□□ -0.22
CLK3-226ENST00000569406 KANK1Q14678 1352 aa13.65□□□□□ -0.22
CLK3-226ENST00000569406 CFAP70Q5T0N1 1121 aa13.65□□□□□ -0.23
CLK3-226ENST00000569406 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.64□□□□□ -0.23
CLK3-226ENST00000569406 CLGNO14967 610 aa13.64□□□□□ -0.23
CLK3-226ENST00000569406 IRX5P78411 483 aaPredicted RBP13.64□□□□□ -0.23
CLK3-226ENST00000569406 NOS1P29475 1434 aa13.64□□□□□ -0.23
CLK3-226ENST00000569406 SOX12O15370 315 aa13.63□□□□□ -0.23
CLK3-226ENST00000569406 ZNF771Q7L3S4 317 aaPredicted RBP13.63□□□□□ -0.23
CLK3-226ENST00000569406 NEO1Q92859 1461 aa13.62□□□□□ -0.23
CLK3-226ENST00000569406 ASXL1Q8IXJ9 1541 aa13.62□□□□□ -0.23
CLK3-226ENST00000569406 MYO5BQ9ULV0 1848 aa13.61□□□□□ -0.23
CLK3-226ENST00000569406 CDCA7LQ96GN5 454 aa13.61□□□□□ -0.23
CLK3-226ENST00000569406 CARD14Q9BXL6 1004 aa13.61□□□□□ -0.23
CLK3-226ENST00000569406 NEXMIFQ5QGS0 1516 aa13.61□□□□□ -0.23
CLK3-226ENST00000569406 DNAJC2Q99543 621 aaKnown RBP13.6□□□□□ -0.23
CLK3-226ENST00000569406 NPC1L1Q9UHC9 1359 aa13.6□□□□□ -0.23
CLK3-226ENST00000569406 QRICH2Q9H0J4 1663 aa13.6□□□□□ -0.23
CLK3-226ENST00000569406 VGFO15240 615 aaPredicted RBP13.6□□□□□ -0.23
CLK3-226ENST00000569406 RAPGEF3O95398 923 aa13.6□□□□□ -0.23
CLK3-226ENST00000569406 TERF1P54274 439 aa13.6□□□□□ -0.23
CLK3-226ENST00000569406 ZSCAN30Q86W11 494 aa13.6□□□□□ -0.23
CLK3-226ENST00000569406 SBNO2Q9Y2G9 1366 aa13.59□□□□□ -0.23
CLK3-226ENST00000569406 DYNC1I1O14576 645 aa13.59□□□□□ -0.23
CLK3-226ENST00000569406 PPP2R1AP30153 589 aa13.58□□□□□ -0.23
CLK3-226ENST00000569406 ARHGEF28Q8N1W1 1705 aaKnown RBP13.58□□□□□ -0.23
CLK3-226ENST00000569406 ZNF521Q96K83 1311 aa13.58□□□□□ -0.23
CLK3-226ENST00000569406 ZBTB7CA1YPR0 619 aa13.58□□□□□ -0.24
CLK3-226ENST00000569406 YEATS2Q9ULM3 1422 aa13.58□□□□□ -0.24
CLK3-226ENST00000569406 PLEKHH1Q9ULM0 1364 aa13.58□□□□□ -0.24
CLK3-226ENST00000569406 BECN1Q14457 450 aa13.57□□□□□ -0.24
CLK3-226ENST00000569406 SHPRHQ149N8 1683 aa13.57□□□□□ -0.24
CLK3-226ENST00000569406 ADAMTS8Q9UP79 889 aa13.57□□□□□ -0.24
CLK3-226ENST00000569406 GLI2P10070 1586 aa13.57□□□□□ -0.24
CLK3-226ENST00000569406 TRAK2O60296 914 aa13.57□□□□□ -0.24
CLK3-226ENST00000569406 SPRYD3Q8NCJ5 442 aa13.57□□□□□ -0.24
CLK3-226ENST00000569406 XPCQ01831 940 aaPredicted RBP13.56□□□□□ -0.24
CLK3-226ENST00000569406 TRIM6-TRIM34B2RNG4 842 aa13.56□□□□□ -0.24
CLK3-226ENST00000569406 TRIM34Q9BYJ4 488 aa13.56□□□□□ -0.24
CLK3-226ENST00000569406 SPDYE4A6NLX3 237 aa13.56□□□□□ -0.24
CLK3-226ENST00000569406 PTMSP20962 102 aa13.55□□□□□ -0.24
CLK3-226ENST00000569406 ARHGAP31Q2M1Z3 1444 aa13.55□□□□□ -0.24
CLK3-226ENST00000569406 C14orf93Q9H972 538 aaKnown RBP13.55□□□□□ -0.24
CLK3-226ENST00000569406 PTMAP06454 111 aaKnown RBP13.54□□□□□ -0.24
CLK3-226ENST00000569406 FAM161AQ3B820 660 aa13.54□□□□□ -0.24
CLK3-226ENST00000569406 TMEM131LA2VDJ0 1609 aa13.54□□□□□ -0.24
CLK3-226ENST00000569406 PREX1Q8TCU6 1659 aa13.54□□□□□ -0.24
CLK3-226ENST00000569406 PRR29P0C7W0 189 aa13.53□□□□□ -0.24
CLK3-226ENST00000569406 TULP4Q9NRJ4 1543 aa13.53□□□□□ -0.24
CLK3-226ENST00000569406 EIF3AQ14152 1382 aaKnown RBP13.53□□□□□ -0.24
CLK3-226ENST00000569406 RRP1P56182 461 aaKnown RBP13.53□□□□□ -0.24
CLK3-226ENST00000569406 EP400NLQ6ZTU2 488 aa13.53□□□□□ -0.24
CLK3-226ENST00000569406 USP32Q8NFA0 1604 aa13.52□□□□□ -0.24
CLK3-226ENST00000569406 PSEN1P49768 467 aa13.52□□□□□ -0.24
CLK3-226ENST00000569406 MCM4P33991 863 aa13.52□□□□□ -0.25
CLK3-226ENST00000569406 GGT6Q6P531 493 aa13.52□□□□□ -0.25
CLK3-226ENST00000569406 FAM43BQ6ZT52 329 aaPredicted RBP13.52□□□□□ -0.25
CLK3-226ENST00000569406 DIP2BQ9P265 1576 aa13.52□□□□□ -0.25
CLK3-226ENST00000569406 MMP14P50281 582 aa13.52□□□□□ -0.25
CLK3-226ENST00000569406 ZNF622Q969S3 477 aaKnown RBP eCLIP13.51□□□□□ -0.252e-8■■□□□ 11.4
CLK3-226ENST00000569406 RIMBP3CA6NJZ7 1639 aa13.51□□□□□ -0.25
CLK3-226ENST00000569406 RIMBP3BA6NNM3 1639 aa13.51□□□□□ -0.25
CLK3-226ENST00000569406 RIMBP3Q9UFD9 1639 aa13.51□□□□□ -0.25
CLK3-226ENST00000569406 PDE3BQ13370 1112 aa13.51□□□□□ -0.25
CLK3-226ENST00000569406 ATP2B3Q16720 1220 aa13.51□□□□□ -0.25
CLK3-226ENST00000569406 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
CLK3-226ENST00000569406 TSC1Q92574 1164 aa13.5□□□□□ -0.25
CLK3-226ENST00000569406 RCAN3Q9UKA8 241 aa13.5□□□□□ -0.25
CLK3-226ENST00000569406 KNSTRNQ9Y448 316 aa13.5□□□□□ -0.25
CLK3-226ENST00000569406 MLECQ14165 292 aa13.49□□□□□ -0.25
CLK3-226ENST00000569406 JARID2Q92833 1246 aaPredicted RBP13.49□□□□□ -0.25
CLK3-226ENST00000569406 TRERF1Q96PN7 1200 aa13.49□□□□□ -0.25
CLK3-226ENST00000569406 LOC102724159A0A0B4J2E5 919 aa13.48□□□□□ -0.25
CLK3-226ENST00000569406 PWP2Q15269 919 aaKnown RBP13.48□□□□□ -0.25
CLK3-226ENST00000569406 TMEM132EQ6IEE7 984 aa13.48□□□□□ -0.25
CLK3-226ENST00000569406 TRMT2AQ8IZ69 625 aaKnown RBP13.48□□□□□ -0.25
CLK3-226ENST00000569406 TNNT3P45378 269 aaPredicted RBP13.48□□□□□ -0.25
CLK3-226ENST00000569406 DUSP27Q5VZP5 1158 aa13.48□□□□□ -0.25
CLK3-226ENST00000569406 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
CLK3-226ENST00000569406 AXDND1Q5T1B0 1012 aaPredicted RBP13.47□□□□□ -0.25
CLK3-226ENST00000569406 CFAP44Q96MT7 982 aa13.47□□□□□ -0.25
CLK3-226ENST00000569406 CDCA8Q53HL2 280 aa13.47□□□□□ -0.25
CLK3-226ENST00000569406 ZFYVE9O95405 1425 aa13.47□□□□□ -0.25
CLK3-226ENST00000569406 CCDC173Q0VFZ6 552 aa13.47□□□□□ -0.25
CLK3-226ENST00000569406 C8orf34Q49A92 452 aa13.47□□□□□ -0.25
CLK3-226ENST00000569406 SETD1AO15047 1707 aaKnown RBP13.47□□□□□ -0.25
CLK3-226ENST00000569406 CCDC9Q9Y3X0 531 aaKnown RBP13.46□□□□□ -0.25
CLK3-226ENST00000569406 IDI1Q13907 227 aa13.46□□□□□ -0.25
CLK3-226ENST00000569406 SASS6Q6UVJ0 657 aa13.46□□□□□ -0.25
CLK3-226ENST00000569406 RPGRIP1LQ68CZ1 1315 aa13.46□□□□□ -0.26
CLK3-226ENST00000569406 DMRT2Q9Y5R5 561 aa13.46□□□□□ -0.26
CLK3-226ENST00000569406 PTPRMP28827 1452 aa13.45□□□□□ -0.26
CLK3-226ENST00000569406 GAS2L3Q86XJ1 694 aa13.45□□□□□ -0.26
CLK3-226ENST00000569406 TRAK1Q9UPV9 953 aa13.45□□□□□ -0.26
CLK3-226ENST00000569406 REREQ9P2R6 1566 aa13.45□□□□□ -0.26
CLK3-226ENST00000569406 PLIN1O60240 522 aa13.45□□□□□ -0.26
CLK3-226ENST00000569406 C20orf194Q5TEA3 1177 aa13.44□□□□□ -0.26
CLK3-226ENST00000569406 FAM177BA6PVY3 158 aa13.44□□□□□ -0.26
CLK3-226ENST00000569406 SLC20A2Q08357 652 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms