RNA–Protein interactions for RNA: ENST00000560998.5

RABGGTA-220, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 1,997 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-220ENST00000560998 WWC1Q8IX03 1113 aa17.86■□□□□ 0.45
RABGGTA-220ENST00000560998 ZMYND15Q9H091 742 aa17.86■□□□□ 0.45
RABGGTA-220ENST00000560998 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.85■□□□□ 0.45
RABGGTA-220ENST00000560998 NLRP1Q9C000 1473 aa17.85■□□□□ 0.45
RABGGTA-220ENST00000560998 CLCN1P35523 988 aa17.84■□□□□ 0.45
RABGGTA-220ENST00000560998 HSP90AA2PQ14568 343 aaPredicted RBP17.84■□□□□ 0.45
RABGGTA-220ENST00000560998 HSP90AA1P07900 732 aaKnown RBP17.84■□□□□ 0.45
RABGGTA-220ENST00000560998 ESF1Q9H501 851 aaKnown RBP17.84■□□□□ 0.45
RABGGTA-220ENST00000560998 VSIG10Q8N0Z9 540 aa17.83■□□□□ 0.44
RABGGTA-220ENST00000560998 TCP11L2Q8N4U5 519 aa17.83■□□□□ 0.44
RABGGTA-220ENST00000560998 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.83■□□□□ 0.44
RABGGTA-220ENST00000560998 PHF23Q9BUL5 403 aaPredicted RBP17.83■□□□□ 0.44
RABGGTA-220ENST00000560998 PNNQ9H307 717 aaKnown RBP17.82■□□□□ 0.44
RABGGTA-220ENST00000560998 GGNBP2Q9H3C7 697 aa17.82■□□□□ 0.44
RABGGTA-220ENST00000560998 KIF20BQ96Q89 1820 aa17.82■□□□□ 0.44
RABGGTA-220ENST00000560998 FYB1O15117 783 aa17.82■□□□□ 0.44
RABGGTA-220ENST00000560998 HDGFL2Q7Z4V5 671 aaPredicted RBP17.82■□□□□ 0.44
RABGGTA-220ENST00000560998 WAPLQ7Z5K2 1190 aa17.81■□□□□ 0.44
RABGGTA-220ENST00000560998 COL3A1P02461 1466 aaPredicted RBP17.81■□□□□ 0.44
RABGGTA-220ENST00000560998 BECN1Q14457 450 aa17.8■□□□□ 0.44
RABGGTA-220ENST00000560998 ADGRB2O60241 1585 aa17.8■□□□□ 0.44
RABGGTA-220ENST00000560998 CABP1Q9NZU7 370 aa17.8■□□□□ 0.44
RABGGTA-220ENST00000560998 RRP7AQ9Y3A4 280 aaKnown RBP17.8■□□□□ 0.44
RABGGTA-220ENST00000560998 TNRQ92752 1358 aa17.8■□□□□ 0.44
RABGGTA-220ENST00000560998 CCDC27Q2M243 656 aa17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 NCBP3Q53F19 620 aaKnown RBP17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 KNDC1Q76NI1 1749 aa17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 U2AF1L5P0DN76 240 aaPredicted RBP17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 U2AF1Q01081 240 aaKnown RBP eCLIP17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 WDR63Q8IWG1 891 aa17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 NAP1L5Q96NT1 182 aaPredicted RBP17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 METP08581 1390 aa17.79■□□□□ 0.44
RABGGTA-220ENST00000560998 ATP7BP35670 1465 aa17.78■□□□□ 0.44
RABGGTA-220ENST00000560998 NEUROD2Q15784 382 aa17.78■□□□□ 0.44
RABGGTA-220ENST00000560998 UBR1Q8IWV7 1749 aa17.77■□□□□ 0.44
RABGGTA-220ENST00000560998 BCAR3O75815 825 aa17.77■□□□□ 0.44
RABGGTA-220ENST00000560998 SKAP1Q86WV1 359 aa17.76■□□□□ 0.43
RABGGTA-220ENST00000560998 HDGFP51858 240 aaKnown RBP17.75■□□□□ 0.43
RABGGTA-220ENST00000560998 TECPR2O15040 1411 aa17.75■□□□□ 0.43
RABGGTA-220ENST00000560998 FSD2A1L4K1 749 aa17.74■□□□□ 0.43
RABGGTA-220ENST00000560998 FAM135BQ49AJ0 1406 aa17.74■□□□□ 0.43
RABGGTA-220ENST00000560998 GOLGA6L3A6NEY3 463 aa17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 SIRT1Q96EB6 747 aa17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 PNPLA6Q8IY17 1366 aa17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 TMEM2Q9UHN6 1383 aa17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 CPS1P31327 1500 aa17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 WASLO00401 505 aaPredicted RBP17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 PLEKHF1Q96S99 279 aa17.73■□□□□ 0.43
RABGGTA-220ENST00000560998 CPSF1Q10570 1443 aaKnown RBP17.72■□□□□ 0.43
RABGGTA-220ENST00000560998 TXNDC2Q86VQ3 553 aa17.71■□□□□ 0.43
RABGGTA-220ENST00000560998 U2SURPO15042 1029 aaKnown RBP17.71■□□□□ 0.43
RABGGTA-220ENST00000560998 PDE3AQ14432 1141 aa17.71■□□□□ 0.43
RABGGTA-220ENST00000560998 PPIP5K1Q6PFW1 1433 aa17.7■□□□□ 0.42
RABGGTA-220ENST00000560998 ISY1Q9ULR0 285 aaKnown RBP17.7■□□□□ 0.42
RABGGTA-220ENST00000560998 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.7■□□□□ 0.42
RABGGTA-220ENST00000560998 EDC4Q6P2E9 1401 aaKnown RBP17.69■□□□□ 0.42
RABGGTA-220ENST00000560998 USP19O94966 1318 aa17.69■□□□□ 0.42
RABGGTA-220ENST00000560998 CDC42BPGQ6DT37 1551 aa17.69■□□□□ 0.42
RABGGTA-220ENST00000560998 RARSP54136 660 aaKnown RBP17.69■□□□□ 0.42
RABGGTA-220ENST00000560998 MYH16Q9H6N6 1097 aa17.69■□□□□ 0.42
RABGGTA-220ENST00000560998 DIAPH1O60610 1272 aaKnown RBP17.68■□□□□ 0.42
RABGGTA-220ENST00000560998 XRCC6P12956 609 aaKnown RBP eCLIP17.68■□□□□ 0.42
RABGGTA-220ENST00000560998 ADAMTS13Q76LX8 1427 aa17.68■□□□□ 0.42
RABGGTA-220ENST00000560998 MAPK8IP3Q9UPT6 1336 aa17.68■□□□□ 0.42
RABGGTA-220ENST00000560998 TMPOP42166 694 aaKnown RBP17.68■□□□□ 0.42
RABGGTA-220ENST00000560998 ANTXR1Q9H6X2 564 aa17.68■□□□□ 0.42
RABGGTA-220ENST00000560998 MON2Q7Z3U7 1717 aa17.67■□□□□ 0.42
RABGGTA-220ENST00000560998 TPM2P07951 284 aa17.67■□□□□ 0.42
RABGGTA-220ENST00000560998 NUDT16Q96DE0 195 aaKnown RBP17.66■□□□□ 0.42
RABGGTA-220ENST00000560998 MAP2P11137 1827 aaKnown RBP17.66■□□□□ 0.42
RABGGTA-220ENST00000560998 AKAP12Q02952 1782 aa17.66■□□□□ 0.42
RABGGTA-220ENST00000560998 PLEKHG1Q9ULL1 1385 aa17.65■□□□□ 0.42
RABGGTA-220ENST00000560998 CANXP27824 592 aaKnown RBP17.65■□□□□ 0.42
RABGGTA-220ENST00000560998 MRE11P49959 708 aa17.65■□□□□ 0.42
RABGGTA-220ENST00000560998 POLKQ9UBT6 870 aa17.65■□□□□ 0.42
RABGGTA-220ENST00000560998 TRIM35Q9UPQ4 493 aa17.65■□□□□ 0.42
RABGGTA-220ENST00000560998 ROBO2Q9HCK4 1378 aa17.64■□□□□ 0.41
RABGGTA-220ENST00000560998 ITSN1Q15811 1721 aa17.64■□□□□ 0.41
RABGGTA-220ENST00000560998 RGS3P49796 1198 aa17.64■□□□□ 0.41
RABGGTA-220ENST00000560998 PANK1Q8TE04 598 aa17.64■□□□□ 0.41
RABGGTA-220ENST00000560998 CCDC61Q9Y6R9 512 aa17.64■□□□□ 0.41
RABGGTA-220ENST00000560998 C3P01024 1663 aa17.63■□□□□ 0.41
RABGGTA-220ENST00000560998 LTKP29376 864 aa17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 NME9Q86XW9 330 aa17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 LRRC7Q96NW7 1537 aa17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 FBLN1P23142 703 aa17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 IL16Q14005 1332 aa17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 NCKAP5LQ9HCH0 1330 aa17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.62■□□□□ 0.41
RABGGTA-220ENST00000560998 FCHSD2O94868 740 aa17.61■□□□□ 0.41
RABGGTA-220ENST00000560998 CEBPAP49715 358 aaPredicted RBP17.61■□□□□ 0.41
RABGGTA-220ENST00000560998 COG6Q9Y2V7 657 aa17.61■□□□□ 0.41
RABGGTA-220ENST00000560998 AATKQ6ZMQ8 1374 aa17.61■□□□□ 0.41
RABGGTA-220ENST00000560998 PRR36Q9H6K5 1346 aa17.61■□□□□ 0.41
RABGGTA-220ENST00000560998 CT47B1P0C2W7 299 aaPredicted RBP17.6■□□□□ 0.41
RABGGTA-220ENST00000560998 PDCL3Q9H2J4 239 aa17.6■□□□□ 0.41
RABGGTA-220ENST00000560998 UPF2Q9HAU5 1272 aaKnown RBP17.6■□□□□ 0.41
RABGGTA-220ENST00000560998 CDK12Q9NYV4 1490 aaPredicted RBP17.59■□□□□ 0.41
RABGGTA-220ENST00000560998 TOPAZ1Q8N9V7 1692 aa17.59■□□□□ 0.41
RABGGTA-220ENST00000560998 RIPK4P57078 832 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms