RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	HMOX1	P09601	288 aa		19.02	■□□□□ 0.64
DDX55-209	ENST00000542286	TMPO	P42166	694 aa	Known RBP	19.02	■□□□□ 0.64
DDX55-209	ENST00000542286	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	19.02	■□□□□ 0.63
DDX55-209	ENST00000542286	USP32	Q8NFA0	1604 aa		19.01	■□□□□ 0.63
DDX55-209	ENST00000542286	WDR63	Q8IWG1	891 aa		19.01	■□□□□ 0.63
DDX55-209	ENST00000542286	THUMPD2	Q9BTF0	503 aa	Known RBP	19.01	■□□□□ 0.63
DDX55-209	ENST00000542286	NME9	Q86XW9	330 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	MET	P08581	1390 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	ATAD2	Q6PL18	1390 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	RIMS2	Q9UQ26	1411 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	A2ML1	A8K2U0	1454 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	RIPK4	P57078	832 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	PDE3A	Q14432	1141 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	PUS7	Q96PZ0	661 aa	Known RBP	19	■□□□□ 0.63
DDX55-209	ENST00000542286	EMILIN1	Q9Y6C2	1016 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	NLRP1	Q9C000	1473 aa		19	■□□□□ 0.63
DDX55-209	ENST00000542286	MAPK8IP3	Q9UPT6	1336 aa		18.99	■□□□□ 0.63
DDX55-209	ENST00000542286	NSD2	O96028	1365 aa		18.99	■□□□□ 0.63
DDX55-209	ENST00000542286	DIAPH1	O60610	1272 aa	Known RBP	18.98	■□□□□ 0.63
DDX55-209	ENST00000542286	FAM161A	Q3B820	660 aa		18.98	■□□□□ 0.63
DDX55-209	ENST00000542286	ARHGEF40	Q8TER5	1519 aa		18.98	■□□□□ 0.63
DDX55-209	ENST00000542286	SEC24B	O95487	1268 aa		18.98	■□□□□ 0.63
DDX55-209	ENST00000542286	NGEF	Q8N5V2	710 aa		18.98	■□□□□ 0.63
DDX55-209	ENST00000542286	ESF1	Q9H501	851 aa	Known RBP	18.97	■□□□□ 0.63
DDX55-209	ENST00000542286	MYH16	Q9H6N6	1097 aa		18.97	■□□□□ 0.63
DDX55-209	ENST00000542286	COL3A1	P02461	1466 aa	Predicted RBP	18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	PHACTR3	Q96KR7	559 aa		18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	SMC4	Q9NTJ3	1288 aa		18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	POLK	Q9UBT6	870 aa		18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	PRKAR2B	P31323	418 aa		18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	RRS1	Q15050	365 aa	Known RBP	18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	SSH1	Q8WYL5	1049 aa		18.96	■□□□□ 0.63
DDX55-209	ENST00000542286	CEBPA	P49715	358 aa	Predicted RBP	18.95	■□□□□ 0.62
DDX55-209	ENST00000542286	CCDC27	Q2M243	656 aa		18.95	■□□□□ 0.62
DDX55-209	ENST00000542286	UBE2Q2	Q8WVN8	375 aa		18.95	■□□□□ 0.62
DDX55-209	ENST00000542286	BRPF3	Q9ULD4	1205 aa		18.94	■□□□□ 0.62
DDX55-209	ENST00000542286	ELL2	O00472	640 aa	Predicted RBP	18.93	■□□□□ 0.62
DDX55-209	ENST00000542286	SOX12	O15370	315 aa		18.93	■□□□□ 0.62
DDX55-209	ENST00000542286	FTSJ3	Q8IY81	847 aa	Known RBP	18.93	■□□□□ 0.62
DDX55-209	ENST00000542286	ZMYM3	Q14202	1370 aa		18.92	■□□□□ 0.62
DDX55-209	ENST00000542286	WASL	O00401	505 aa	Predicted RBP	18.91	■□□□□ 0.62
DDX55-209	ENST00000542286	TRIM27	P14373	513 aa		18.91	■□□□□ 0.62
DDX55-209	ENST00000542286	NINL	Q9Y2I6	1382 aa		18.91	■□□□□ 0.62
DDX55-209	ENST00000542286	NOB1	Q9ULX3	412 aa	Known RBP	18.91	■□□□□ 0.62
DDX55-209	ENST00000542286	ADGRB2	O60241	1585 aa		18.9	■□□□□ 0.62
DDX55-209	ENST00000542286	NUDT16	Q96DE0	195 aa	Known RBP	18.9	■□□□□ 0.62
DDX55-209	ENST00000542286	PDZRN3	Q9UPQ7	1066 aa		18.9	■□□□□ 0.62
DDX55-209	ENST00000542286	PPIP5K1	Q6PFW1	1433 aa		18.89	■□□□□ 0.62
DDX55-209	ENST00000542286	ZKSCAN2	Q63HK3	967 aa		18.89	■□□□□ 0.62
DDX55-209	ENST00000542286	ITPRIP	Q8IWB1	547 aa		18.89	■□□□□ 0.62
DDX55-209	ENST00000542286	GSE1	Q14687	1217 aa		18.89	■□□□□ 0.61
DDX55-209	ENST00000542286	DZIP1L	Q8IYY4	767 aa	Known RBP	18.88	■□□□□ 0.61
DDX55-209	ENST00000542286	MVP	Q14764	893 aa	Known RBP	18.88	■□□□□ 0.61
DDX55-209	ENST00000542286	SLC26A8	Q96RN1	970 aa		18.88	■□□□□ 0.61
DDX55-209	ENST00000542286	RSPH6A	Q9H0K4	717 aa		18.88	■□□□□ 0.61
DDX55-209	ENST00000542286	FAM83G	A6ND36	823 aa		18.87	■□□□□ 0.61
DDX55-209	ENST00000542286	DCTN1	Q14203	1278 aa		18.87	■□□□□ 0.61
DDX55-209	ENST00000542286	SPATA31D1	Q6ZQQ2	1576 aa		18.87	■□□□□ 0.61
DDX55-209	ENST00000542286	PRR36	Q9H6K5	1346 aa		18.87	■□□□□ 0.61
DDX55-209	ENST00000542286	LRRC7	Q96NW7	1537 aa		18.86	■□□□□ 0.61
DDX55-209	ENST00000542286	EIF5B	O60841	1220 aa	Known RBP	18.86	■□□□□ 0.61
DDX55-209	ENST00000542286	TMEM57	Q8N5G2	664 aa		18.86	■□□□□ 0.61
DDX55-209	ENST00000542286	TSPYL6	Q8N831	410 aa		18.86	■□□□□ 0.61
DDX55-209	ENST00000542286	NRXN3	Q9Y4C0	1643 aa		18.85	■□□□□ 0.61
DDX55-209	ENST00000542286	PNPLA6	Q8IY17	1366 aa		18.85	■□□□□ 0.61
DDX55-209	ENST00000542286	MAP2	P11137	1827 aa	Known RBP	18.85	■□□□□ 0.61
DDX55-209	ENST00000542286	SETD1A	O15047	1707 aa	Known RBP	18.84	■□□□□ 0.61
DDX55-209	ENST00000542286	USP19	O94966	1318 aa		18.84	■□□□□ 0.61
DDX55-209	ENST00000542286	LTK	P29376	864 aa		18.84	■□□□□ 0.61
DDX55-209	ENST00000542286	CPS1	P31327	1500 aa		18.84	■□□□□ 0.61
DDX55-209	ENST00000542286	AGL	P35573	1532 aa		18.84	■□□□□ 0.61
DDX55-209	ENST00000542286	KIF20B	Q96Q89	1820 aa		18.83	■□□□□ 0.61
DDX55-209	ENST00000542286	AEBP1	Q8IUX7	1158 aa		18.82	■□□□□ 0.6
DDX55-209	ENST00000542286	ANKRD26	Q9UPS8	1709 aa		18.82	■□□□□ 0.6
DDX55-209	ENST00000542286	ROBO2	Q9HCK4	1378 aa		18.82	■□□□□ 0.6
DDX55-209	ENST00000542286	ATF7IP	Q6VMQ6	1270 aa		18.82	■□□□□ 0.6
DDX55-209	ENST00000542286	FCHSD2	O94868	740 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	NFKBIB	Q15653	356 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	PMFBP1	Q8TBY8	1022 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	DDRGK1	Q96HY6	314 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	C1orf115	Q9H7X2	142 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	DAXX	Q9UER7	740 aa	Predicted RBP	18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	IL13	P35225	146 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	CCDC61	Q9Y6R9	512 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	PPP6R1	Q9UPN7	881 aa		18.81	■□□□□ 0.6
DDX55-209	ENST00000542286	COG3	Q96JB2	828 aa		18.8	■□□□□ 0.6
DDX55-209	ENST00000542286	MED14	O60244	1454 aa		18.8	■□□□□ 0.6
DDX55-209	ENST00000542286	KIF13A	Q9H1H9	1805 aa		18.8	■□□□□ 0.6
DDX55-209	ENST00000542286	TNR	Q92752	1358 aa		18.8	■□□□□ 0.6
DDX55-209	ENST00000542286	RWDD1	Q9H446	243 aa	Predicted RBP	18.79	■□□□□ 0.6
DDX55-209	ENST00000542286	CPSF1	Q10570	1443 aa	Known RBP	18.78	■□□□□ 0.6
DDX55-209	ENST00000542286	FAM135B	Q49AJ0	1406 aa		18.78	■□□□□ 0.6
DDX55-209	ENST00000542286	NFE2L2	Q16236	605 aa		18.78	■□□□□ 0.6
DDX55-209	ENST00000542286	ATP7B	P35670	1465 aa		18.77	■□□□□ 0.6
DDX55-209	ENST00000542286	KRT24	Q2M2I5	525 aa		18.77	■□□□□ 0.6
DDX55-209	ENST00000542286	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	18.77	■□□□□ 0.6
DDX55-209	ENST00000542286	RERE	Q9P2R6	1566 aa		18.77	■□□□□ 0.6
DDX55-209	ENST00000542286	MBIP	Q9NS73	344 aa		18.76	■□□□□ 0.59
DDX55-209	ENST00000542286	DLC1	Q96QB1	1528 aa		18.76	■□□□□ 0.59
DDX55-209	ENST00000542286	EDC4	Q6P2E9	1401 aa	Known RBP	18.75	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms