RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 DHX29Q7Z478 1369 aaKnown RBP4.42□□□□□ -1.7
MCF2-208ENST00000519895 PLCH1Q4KWH8 1693 aa4.42□□□□□ -1.7
MCF2-208ENST00000519895 ARXQ96QS3 562 aa4.41□□□□□ -1.7
MCF2-208ENST00000519895 COL9A1P20849 921 aa4.41□□□□□ -1.7
MCF2-208ENST00000519895 PDE4DIPQ5VU43 2346 aa4.41□□□□□ -1.7
MCF2-208ENST00000519895 DAPK1P53355 1430 aa4.41□□□□□ -1.7
MCF2-208ENST00000519895 TTBK1Q5TCY1 1321 aaPredicted RBP4.41□□□□□ -1.7
MCF2-208ENST00000519895 IQGAP3Q86VI3 1631 aa4.4□□□□□ -1.7
MCF2-208ENST00000519895 NRXN3Q9Y4C0 1643 aa4.4□□□□□ -1.7
MCF2-208ENST00000519895 NRAPQ86VF7 1730 aa4.4□□□□□ -1.7
MCF2-208ENST00000519895 HNRNPMP52272 730 aaKnown RBP eCLIP4.4□□□□□ -1.7
MCF2-208ENST00000519895 HSPA8P11142 646 aaKnown RBP4.4□□□□□ -1.71
MCF2-208ENST00000519895 C19orf44Q9H6X5 657 aa4.4□□□□□ -1.71
MCF2-208ENST00000519895 FOXD4L1Q9NU39 408 aa4.4□□□□□ -1.71
MCF2-208ENST00000519895 EP400Q96L91 3159 aa4.4□□□□□ -1.71
MCF2-208ENST00000519895 DAXXQ9UER7 740 aaPredicted RBP4.39□□□□□ -1.71
MCF2-208ENST00000519895 FAM196AQ6ZSG2 479 aa4.39□□□□□ -1.71
MCF2-208ENST00000519895 SMC1BQ8NDV3 1235 aa4.39□□□□□ -1.71
MCF2-208ENST00000519895 PIK3R4Q99570 1358 aa4.39□□□□□ -1.71
MCF2-208ENST00000519895 WBP1LQ9NX94 342 aa4.39□□□□□ -1.71
MCF2-208ENST00000519895 CFDP1Q9UEE9 299 aaPredicted RBP4.39□□□□□ -1.71
MCF2-208ENST00000519895 MST1RQ04912 1400 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 PTPRUQ92729 1446 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 ANKRD30AQ9BXX3 1397 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 CACNA1AO00555 2505 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 SOS2Q07890 1332 aaPredicted RBP4.38□□□□□ -1.71
MCF2-208ENST00000519895 LAMB4A4D0S4 1761 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 P3H3Q8IVL6 736 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 TAOK2Q9UL54 1235 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 PLEKHG2Q9H7P9 1386 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 FKBP8Q14318 412 aa4.38□□□□□ -1.71
MCF2-208ENST00000519895 COL25A1Q9BXS0 654 aaPredicted RBP4.38□□□□□ -1.71
MCF2-208ENST00000519895 HFM1A2PYH4 1435 aa4.37□□□□□ -1.71
MCF2-208ENST00000519895 SPAG9O60271 1321 aaKnown RBP4.37□□□□□ -1.71
MCF2-208ENST00000519895 PIK3C2BO00750 1634 aa4.37□□□□□ -1.71
MCF2-208ENST00000519895 P2RX7Q99572 595 aaKnown RBP4.37□□□□□ -1.71
MCF2-208ENST00000519895 ATF3P18847 181 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 TNRC18O15417 2968 aaPredicted RBP4.36□□□□□ -1.71
MCF2-208ENST00000519895 TOPAZ1Q8N9V7 1692 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 ADAMTS2O95450 1211 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 PLCB2Q00722 1185 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 C16orf71Q8IYS4 520 aaPredicted RBP4.36□□□□□ -1.71
MCF2-208ENST00000519895 ZBTB12Q9Y330 459 aaPredicted RBP4.36□□□□□ -1.71
MCF2-208ENST00000519895 EID1Q9Y6B2 187 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 PLSCR1O15162 318 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 BCANQ96GW7 911 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 ERVK-7P63135 1459 aa4.36□□□□□ -1.71
MCF2-208ENST00000519895 PKD1L3Q7Z443 1732 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 CNTNAP1P78357 1384 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 NOS1P29475 1434 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 PIK3C2AO00443 1686 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 LBX1P52954 281 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 SLC16A10Q8TF71 515 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 NALCNQ8IZF0 1738 aa4.35□□□□□ -1.71
MCF2-208ENST00000519895 CREBZFQ9NS37 354 aa4.34□□□□□ -1.71
MCF2-208ENST00000519895 ERBB4Q15303 1308 aa4.34□□□□□ -1.71
MCF2-208ENST00000519895 APBA3O96018 575 aa4.34□□□□□ -1.71
MCF2-208ENST00000519895 TSPY4P0CV99 314 aa4.34□□□□□ -1.71
MCF2-208ENST00000519895 TSPY10P0CW01 314 aa4.34□□□□□ -1.71
MCF2-208ENST00000519895 SAMD1Q6SPF0 538 aaPredicted RBP4.34□□□□□ -1.71
MCF2-208ENST00000519895 YBX3P16989 372 aaKnown RBP eCLIP4.34□□□□□ -1.72
MCF2-208ENST00000519895 STAC3Q96MF2 364 aa4.34□□□□□ -1.72
MCF2-208ENST00000519895 PAPPAQ13219 1627 aa4.34□□□□□ -1.72
MCF2-208ENST00000519895 KANK1Q14678 1352 aa4.33□□□□□ -1.72
MCF2-208ENST00000519895 LOC105371045A0A1W2PR82 267 aa4.33□□□□□ -1.72
MCF2-208ENST00000519895 KANK4Q5T7N3 995 aaPredicted RBP4.33□□□□□ -1.72
MCF2-208ENST00000519895 TIMELESSQ9UNS1 1208 aa4.33□□□□□ -1.72
MCF2-208ENST00000519895 BRD4O60885 1362 aaPredicted RBP4.33□□□□□ -1.72
MCF2-208ENST00000519895 KIF15Q9NS87 1388 aa4.33□□□□□ -1.72
MCF2-208ENST00000519895 ZFYVE9O95405 1425 aa4.33□□□□□ -1.72
MCF2-208ENST00000519895 MAP2K1Q02750 393 aaPredicted RBP4.33□□□□□ -1.72
MCF2-208ENST00000519895 SLC51AQ86UW1 340 aa4.33□□□□□ -1.72
MCF2-208ENST00000519895 TRPM2O94759 1503 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 TMEM2Q9UHN6 1383 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 ANKRD50Q9ULJ7 1429 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 TXNDC2Q86VQ3 553 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 DACH1Q9UI36 760 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 ATXN8OSP0DMR3 200 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 NAIPQ13075 1403 aa4.32□□□□□ -1.72
MCF2-208ENST00000519895 C19orf67A6NJJ6 358 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 HTRA3P83110 453 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 MAP3K11Q16584 847 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 GPR153Q6NV75 609 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 MCOLN1Q9GZU1 580 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 CEP152O94986 1710 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 RBBP6Q7Z6E9 1792 aaKnown RBP4.31□□□□□ -1.72
MCF2-208ENST00000519895 LTKP29376 864 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 TPRNQ4KMQ1 711 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 AFAP1Q8N556 730 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 SBF2Q86WG5 1849 aa4.31□□□□□ -1.72
MCF2-208ENST00000519895 E9PCH4 1651 aa4.3□□□□□ -1.72
MCF2-208ENST00000519895 REM2Q8IYK8 340 aaPredicted RBP4.3□□□□□ -1.72
MCF2-208ENST00000519895 PEAK1Q9H792 1746 aa4.3□□□□□ -1.72
MCF2-208ENST00000519895 LTBP1Q14766 1721 aa4.3□□□□□ -1.72
MCF2-208ENST00000519895 ZBTB7AO95365 584 aa4.3□□□□□ -1.72
MCF2-208ENST00000519895 HAP1P54257 671 aaPredicted RBP4.3□□□□□ -1.72
MCF2-208ENST00000519895 ANKRD13DQ6ZTN6 518 aa4.3□□□□□ -1.72
MCF2-208ENST00000519895 VSIG10Q8N0Z9 540 aa4.3□□□□□ -1.72
MCF2-208ENST00000519895 CA12O43570 354 aa4.29□□□□□ -1.72
MCF2-208ENST00000519895 COL14A1Q05707 1796 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms