RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 NCOA1Q15788 1441 aa10.62□□□□□ -0.71
HMGN1-205ENST00000419378 ZDHHC16Q969W1 377 aa10.62□□□□□ -0.71
HMGN1-205ENST00000419378 OTUD5Q96G74 571 aa10.62□□□□□ -0.71
HMGN1-205ENST00000419378 CHIC2Q9UKJ5 165 aa10.62□□□□□ -0.71
HMGN1-205ENST00000419378 ZNF142P52746 1687 aaPredicted RBP10.62□□□□□ -0.71
HMGN1-205ENST00000419378 PRDM15P57071 1507 aaPredicted RBP10.62□□□□□ -0.71
HMGN1-205ENST00000419378 DEPDC5O75140 1603 aa10.62□□□□□ -0.71
HMGN1-205ENST00000419378 WASHC2CQ9Y4E1 1318 aa10.61□□□□□ -0.71
HMGN1-205ENST00000419378 SNPHO15079 494 aa10.61□□□□□ -0.71
HMGN1-205ENST00000419378 LHX6Q9UPM6 363 aa10.61□□□□□ -0.71
HMGN1-205ENST00000419378 CEP152O94986 1710 aa10.61□□□□□ -0.71
HMGN1-205ENST00000419378 C6orf132Q5T0Z8 1188 aa10.6□□□□□ -0.71
HMGN1-205ENST00000419378 ADAM33Q9BZ11 813 aa10.6□□□□□ -0.71
HMGN1-205ENST00000419378 CEP170BQ9Y4F5 1589 aaPredicted RBP10.6□□□□□ -0.71
HMGN1-205ENST00000419378 CAMSAP1Q5T5Y3 1602 aa10.59□□□□□ -0.71
HMGN1-205ENST00000419378 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.59□□□□□ -0.71
HMGN1-205ENST00000419378 STRCQ7RTU9 1775 aa10.59□□□□□ -0.71
HMGN1-205ENST00000419378 TNRQ92752 1358 aa10.58□□□□□ -0.72
HMGN1-205ENST00000419378 KDM4CQ9H3R0 1056 aa10.58□□□□□ -0.72
HMGN1-205ENST00000419378 FBXO31Q5XUX0 539 aaPredicted RBP10.57□□□□□ -0.72
HMGN1-205ENST00000419378 RRBP1Q9P2E9 1410 aaKnown RBP10.57□□□□□ -0.72
HMGN1-205ENST00000419378 ANKRD50Q9ULJ7 1429 aa10.57□□□□□ -0.72
HMGN1-205ENST00000419378 SPATA31D1Q6ZQQ2 1576 aa10.56□□□□□ -0.72
HMGN1-205ENST00000419378 VWDEQ8N2E2 1590 aa10.56□□□□□ -0.72
HMGN1-205ENST00000419378 A2ML1A8K2U0 1454 aa10.56□□□□□ -0.72
HMGN1-205ENST00000419378 ROCK1Q13464 1354 aa10.56□□□□□ -0.72
HMGN1-205ENST00000419378 ERVK-7P63135 1459 aa10.55□□□□□ -0.72
HMGN1-205ENST00000419378 LMTK2Q8IWU2 1503 aa10.55□□□□□ -0.72
HMGN1-205ENST00000419378 HOXB1P14653 301 aaPredicted RBP10.55□□□□□ -0.72
HMGN1-205ENST00000419378 AMHR2Q16671 573 aa10.55□□□□□ -0.72
HMGN1-205ENST00000419378 ARHGAP31Q2M1Z3 1444 aa10.55□□□□□ -0.72
HMGN1-205ENST00000419378 PLA2R1Q13018 1463 aa10.55□□□□□ -0.72
HMGN1-205ENST00000419378 NLRP1Q9C000 1473 aa10.55□□□□□ -0.72
HMGN1-205ENST00000419378 KANK1Q14678 1352 aa10.54□□□□□ -0.72
HMGN1-205ENST00000419378 PPP4R3BQ5MIZ7 849 aa10.54□□□□□ -0.72
HMGN1-205ENST00000419378 UNC13BO14795 1591 aa10.53□□□□□ -0.72
HMGN1-205ENST00000419378 ITGAEP38570 1179 aa10.53□□□□□ -0.72
HMGN1-205ENST00000419378 CERKQ8TCT0 537 aa10.53□□□□□ -0.72
HMGN1-205ENST00000419378 GTF3C3Q9Y5Q9 886 aa10.53□□□□□ -0.72
HMGN1-205ENST00000419378 EFCAB6Q5THR3 1501 aa10.53□□□□□ -0.72
HMGN1-205ENST00000419378 PTPRTO14522 1441 aa10.52□□□□□ -0.73
HMGN1-205ENST00000419378 PSDA5PKW4 1024 aaPredicted RBP10.52□□□□□ -0.73
HMGN1-205ENST00000419378 PADI6Q6TGC4 694 aa10.52□□□□□ -0.73
HMGN1-205ENST00000419378 PARP9Q8IXQ6 854 aa10.52□□□□□ -0.73
HMGN1-205ENST00000419378 IL27Q8NEV9 243 aa10.52□□□□□ -0.73
HMGN1-205ENST00000419378 FAM161AQ3B820 660 aa10.51□□□□□ -0.73
HMGN1-205ENST00000419378 PLSCR2Q9NRY7 297 aa10.51□□□□□ -0.73
HMGN1-205ENST00000419378 UGGT1Q9NYU2 1555 aa10.51□□□□□ -0.73
HMGN1-205ENST00000419378 TTLL12Q14166 644 aaPredicted RBP10.5□□□□□ -0.73
HMGN1-205ENST00000419378 BCL2L12Q9HB09 334 aa10.5□□□□□ -0.73
HMGN1-205ENST00000419378 CFAP65Q6ZU64 1925 aaKnown RBP10.5□□□□□ -0.73
HMGN1-205ENST00000419378 TET3O43151 1660 aa10.5□□□□□ -0.73
HMGN1-205ENST00000419378 POLR1AO95602 1720 aaPredicted RBP10.5□□□□□ -0.73
HMGN1-205ENST00000419378 SYNMO15061 1565 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 NEURL4Q96JN8 1562 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 IQGAP3Q86VI3 1631 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 GCC2Q8IWJ2 1684 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 UBR1Q8IWV7 1749 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 COL9A1P20849 921 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 PRSS12P56730 875 aa10.48□□□□□ -0.73
HMGN1-205ENST00000419378 RPRD2Q5VT52 1461 aaKnown RBP10.48□□□□□ -0.73
HMGN1-205ENST00000419378 TTC13Q8NBP0 860 aa10.47□□□□□ -0.73
HMGN1-205ENST00000419378 CDCA7LQ96GN5 454 aa10.47□□□□□ -0.73
HMGN1-205ENST00000419378 PHOX2BQ99453 314 aa10.47□□□□□ -0.73
HMGN1-205ENST00000419378 FAM117AQ9C073 453 aa10.47□□□□□ -0.73
HMGN1-205ENST00000419378 RBM27Q9P2N5 1060 aaKnown RBP10.47□□□□□ -0.73
HMGN1-205ENST00000419378 NOS1P29475 1434 aa10.47□□□□□ -0.73
HMGN1-205ENST00000419378 PIK3C2BO00750 1634 aa10.47□□□□□ -0.73
HMGN1-205ENST00000419378 PTPREP23469 700 aa10.46□□□□□ -0.73
HMGN1-205ENST00000419378 ADGRG1Q9Y653 693 aa10.46□□□□□ -0.73
HMGN1-205ENST00000419378 LTBP4Q8N2S1 1624 aa10.45□□□□□ -0.74
HMGN1-205ENST00000419378 NAIPQ13075 1403 aa10.45□□□□□ -0.74
HMGN1-205ENST00000419378 OATP04181 439 aa10.45□□□□□ -0.74
HMGN1-205ENST00000419378 METTL3Q86U44 580 aaKnown RBP10.45□□□□□ -0.74
HMGN1-205ENST00000419378 THEMISQ8N1K5 641 aaPredicted RBP10.45□□□□□ -0.74
HMGN1-205ENST00000419378 REPIN1Q9BWE0 567 aaKnown RBP10.45□□□□□ -0.74
HMGN1-205ENST00000419378 E9PCH4 1651 aa10.44□□□□□ -0.74
HMGN1-205ENST00000419378 KDM5AP29375 1690 aaKnown RBP10.44□□□□□ -0.74
HMGN1-205ENST00000419378 HFM1A2PYH4 1435 aa10.44□□□□□ -0.74
HMGN1-205ENST00000419378 NUP155O75694 1391 aa10.44□□□□□ -0.74
HMGN1-205ENST00000419378 MDM2Q00987 491 aaPredicted RBP10.44□□□□□ -0.74
HMGN1-205ENST00000419378 GIGYF2Q6Y7W6 1299 aaKnown RBP10.44□□□□□ -0.74
HMGN1-205ENST00000419378 NLRP7Q8WX94 980 aa10.44□□□□□ -0.74
HMGN1-205ENST00000419378 DAXXQ9UER7 740 aaPredicted RBP10.44□□□□□ -0.74
HMGN1-205ENST00000419378 ADGRB3O60242 1522 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 SLIT1O75093 1534 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 MED14O60244 1454 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 ARHGAP23Q9P227 1491 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 PPP1R3GB7ZBB8 358 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 ANKLE2Q86XL3 938 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 PXYLP1Q8TE99 480 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 FAM198AQ9UFP1 575 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 IQGAP1P46940 1657 aa10.43□□□□□ -0.74
HMGN1-205ENST00000419378 NPHP4O75161 1426 aaPredicted RBP10.42□□□□□ -0.74
HMGN1-205ENST00000419378 CLCN1P35523 988 aa10.42□□□□□ -0.74
HMGN1-205ENST00000419378 KCNK17Q96T54 332 aa10.42□□□□□ -0.74
HMGN1-205ENST00000419378 TMUB1Q9BVT8 246 aa10.42□□□□□ -0.74
HMGN1-205ENST00000419378 SCAF11Q99590 1463 aaKnown RBP10.42□□□□□ -0.74
HMGN1-205ENST00000419378 ZNF335Q9H4Z2 1342 aaPredicted RBP10.41□□□□□ -0.74
HMGN1-205ENST00000419378 PLEKHG3A1L390 1219 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 184.5 ms