RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	LRP5	O75197	1615 aa		13.7	□□□□□ -0.22
NIF3L1-206	ENST00000416651	BRWD3	Q6RI45	1802 aa		13.69	□□□□□ -0.22
NIF3L1-206	ENST00000416651	HDGF	P51858	240 aa	Known RBP	13.69	□□□□□ -0.22
NIF3L1-206	ENST00000416651	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
NIF3L1-206	ENST00000416651	SOS2	Q07890	1332 aa	Predicted RBP	13.68	□□□□□ -0.22
NIF3L1-206	ENST00000416651	CCDC125	Q86Z20	511 aa		13.68	□□□□□ -0.22
NIF3L1-206	ENST00000416651	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.68	□□□□□ -0.22
NIF3L1-206	ENST00000416651	GLI3	P10071	1580 aa		13.67	□□□□□ -0.22
NIF3L1-206	ENST00000416651	ADGRL3	Q9HAR2	1447 aa		13.67	□□□□□ -0.22
NIF3L1-206	ENST00000416651	VASP	P50552	380 aa	Predicted RBP	13.67	□□□□□ -0.22
NIF3L1-206	ENST00000416651	GJD4	Q96KN9	370 aa	Predicted RBP	13.67	□□□□□ -0.22
NIF3L1-206	ENST00000416651	ANKRD30A	Q9BXX3	1397 aa		13.67	□□□□□ -0.22
NIF3L1-206	ENST00000416651		E9PCH4	1651 aa		13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	BLM	P54132	1417 aa	Predicted RBP	13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	SNPH	O15079	494 aa		13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	HRC	P23327	699 aa		13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	XPC	Q01831	940 aa	Predicted RBP	13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	RPRD2	Q5VT52	1461 aa	Known RBP	13.66	□□□□□ -0.22
NIF3L1-206	ENST00000416651	PTCH1	Q13635	1447 aa		13.65	□□□□□ -0.22
NIF3L1-206	ENST00000416651	LAMC1	P11047	1609 aa		13.65	□□□□□ -0.22
NIF3L1-206	ENST00000416651	MYOM2	P54296	1465 aa		13.65	□□□□□ -0.22
NIF3L1-206	ENST00000416651	RALGAPB	Q86X10	1494 aa		13.64	□□□□□ -0.23
NIF3L1-206	ENST00000416651	VPS8	Q8N3P4	1428 aa		13.64	□□□□□ -0.23
NIF3L1-206	ENST00000416651	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.63	□□□□□ -0.23
NIF3L1-206	ENST00000416651	ANKRD50	Q9ULJ7	1429 aa		13.61	□□□□□ -0.23
NIF3L1-206	ENST00000416651	MARF1	Q9Y4F3	1742 aa	Known RBP	13.61	□□□□□ -0.23
NIF3L1-206	ENST00000416651	SEPT12	Q8IYM1	358 aa		13.6	□□□□□ -0.23
NIF3L1-206	ENST00000416651	MARVELD3	Q96A59	401 aa		13.6	□□□□□ -0.23
NIF3L1-206	ENST00000416651	ROBO2	Q9HCK4	1378 aa		13.59	□□□□□ -0.23
NIF3L1-206	ENST00000416651	ADGRL2	O95490	1459 aa		13.59	□□□□□ -0.23
NIF3L1-206	ENST00000416651	LOC105371045	A0A1W2PR82	267 aa		13.58	□□□□□ -0.24
NIF3L1-206	ENST00000416651	SPNS2	Q8IVW8	549 aa		13.58	□□□□□ -0.24
NIF3L1-206	ENST00000416651	PXDN	Q92626	1479 aa		13.58	□□□□□ -0.24
NIF3L1-206	ENST00000416651	MMRN1	Q13201	1228 aa		13.57	□□□□□ -0.24
NIF3L1-206	ENST00000416651	R3HDM1	Q15032	1099 aa	Known RBP	13.57	□□□□□ -0.24
NIF3L1-206	ENST00000416651	FAM182B	Q5T319	152 aa		13.57	□□□□□ -0.24
NIF3L1-206	ENST00000416651	UNC5CL	Q8IV45	518 aa		13.57	□□□□□ -0.24
NIF3L1-206	ENST00000416651	SLIT2	O94813	1529 aa		13.57	□□□□□ -0.24
NIF3L1-206	ENST00000416651	EN1	Q05925	392 aa	Predicted RBP	13.56	□□□□□ -0.24
NIF3L1-206	ENST00000416651	PDCD7	Q8N8D1	485 aa	Known RBP	13.56	□□□□□ -0.24
NIF3L1-206	ENST00000416651	NUTM2F	A1L443	756 aa		13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	FOXO3	O43524	673 aa		13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	YY1	P25490	414 aa		13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	SF3B2	Q13435	895 aa	Known RBP	13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	ZNF326	Q5BKZ1	582 aa	Known RBP	13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	KLHL34	Q8N239	644 aa		13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.55	□□□□□ -0.24
NIF3L1-206	ENST00000416651	ESCO1	Q5FWF5	840 aa		13.54	□□□□□ -0.24
NIF3L1-206	ENST00000416651	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.54	□□□□□ -0.24
NIF3L1-206	ENST00000416651	GOLGA2	Q08379	1002 aa		13.53	□□□□□ -0.24
NIF3L1-206	ENST00000416651	CABLES1	Q8TDN4	633 aa		13.53	□□□□□ -0.24
NIF3L1-206	ENST00000416651	MKRN3	Q13064	507 aa	Known RBP	13.52	□□□□□ -0.25
NIF3L1-206	ENST00000416651	FAM50A	Q14320	339 aa	Known RBP	13.52	□□□□□ -0.25
NIF3L1-206	ENST00000416651	GSE1	Q14687	1217 aa		13.52	□□□□□ -0.25
NIF3L1-206	ENST00000416651	C3orf67	Q6ZVT6	689 aa		13.52	□□□□□ -0.25
NIF3L1-206	ENST00000416651	KRT27	Q7Z3Y8	459 aa		13.52	□□□□□ -0.25
NIF3L1-206	ENST00000416651	SPHKAP	Q2M3C7	1700 aa		13.51	□□□□□ -0.25
NIF3L1-206	ENST00000416651	NEXMIF	Q5QGS0	1516 aa		13.51	□□□□□ -0.25
NIF3L1-206	ENST00000416651	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.51	□□□□□ -0.25
NIF3L1-206	ENST00000416651	IQGAP3	Q86VI3	1631 aa		13.5	□□□□□ -0.25
NIF3L1-206	ENST00000416651	ONECUT3	O60422	494 aa	Predicted RBP	13.49	□□□□□ -0.25
NIF3L1-206	ENST00000416651	BAG6	P46379	1132 aa		13.49	□□□□□ -0.25
NIF3L1-206	ENST00000416651	EZH2	Q15910	746 aa	Known RBP	13.49	□□□□□ -0.25
NIF3L1-206	ENST00000416651	NPHP3	Q7Z494	1330 aa		13.48	□□□□□ -0.25
NIF3L1-206	ENST00000416651	VPS72	Q15906	364 aa		13.48	□□□□□ -0.25
NIF3L1-206	ENST00000416651	CCDC9	Q9Y3X0	531 aa	Known RBP	13.48	□□□□□ -0.25
NIF3L1-206	ENST00000416651	NUP155	O75694	1391 aa		13.47	□□□□□ -0.25
NIF3L1-206	ENST00000416651	USP32	Q8NFA0	1604 aa		13.47	□□□□□ -0.25
NIF3L1-206	ENST00000416651	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
NIF3L1-206	ENST00000416651	CLTCL1	P53675	1640 aa		13.46	□□□□□ -0.25
NIF3L1-206	ENST00000416651	EMP3	P54852	163 aa		13.46	□□□□□ -0.25
NIF3L1-206	ENST00000416651	FAM98C	Q17RN3	349 aa	Known RBP	13.46	□□□□□ -0.25
NIF3L1-206	ENST00000416651	PLCH1	Q4KWH8	1693 aa		13.46	□□□□□ -0.26
NIF3L1-206	ENST00000416651	SPATA31A3	Q5VYP0	1347 aa		13.45	□□□□□ -0.26
NIF3L1-206	ENST00000416651		A0A0G2JS52	829 aa		13.44	□□□□□ -0.26
NIF3L1-206	ENST00000416651	CHRM1	P11229	460 aa	Predicted RBP	13.44	□□□□□ -0.26
NIF3L1-206	ENST00000416651	PSEN1	P49768	467 aa		13.44	□□□□□ -0.26
NIF3L1-206	ENST00000416651	MYT1	Q01538	1121 aa		13.44	□□□□□ -0.26
NIF3L1-206	ENST00000416651	WAPL	Q7Z5K2	1190 aa		13.44	□□□□□ -0.26
NIF3L1-206	ENST00000416651	FAM83G	A6ND36	823 aa		13.43	□□□□□ -0.26
NIF3L1-206	ENST00000416651	TNS1	Q9HBL0	1735 aa	Known RBP	13.43	□□□□□ -0.26
NIF3L1-206	ENST00000416651	CAMTA1	Q9Y6Y1	1673 aa		13.43	□□□□□ -0.26
NIF3L1-206	ENST00000416651	PLEKHH1	Q9ULM0	1364 aa		13.43	□□□□□ -0.26
NIF3L1-206	ENST00000416651	NAIP	Q13075	1403 aa		13.42	□□□□□ -0.26
NIF3L1-206	ENST00000416651	KRT28	Q7Z3Y7	464 aa		13.41	□□□□□ -0.26
NIF3L1-206	ENST00000416651	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.41	□□□□□ -0.26
NIF3L1-206	ENST00000416651	CAMKK2	Q96RR4	588 aa		13.41	□□□□□ -0.26
NIF3L1-206	ENST00000416651	CDC42BPG	Q6DT37	1551 aa		13.41	□□□□□ -0.26
NIF3L1-206	ENST00000416651	RGPD1	P0DJD0	1748 aa		13.4	□□□□□ -0.26
NIF3L1-206	ENST00000416651	NRAP	Q86VF7	1730 aa		13.39	□□□□□ -0.27
NIF3L1-206	ENST00000416651	ABCA3	Q99758	1704 aa		13.39	□□□□□ -0.27
NIF3L1-206	ENST00000416651	SPOCK2	Q92563	424 aa		13.39	□□□□□ -0.27
NIF3L1-206	ENST00000416651	STK26	Q9P289	416 aa		13.39	□□□□□ -0.27
NIF3L1-206	ENST00000416651	HFM1	A2PYH4	1435 aa		13.39	□□□□□ -0.27
NIF3L1-206	ENST00000416651	RGPD8	O14715	1765 aa	Predicted RBP	13.38	□□□□□ -0.27
NIF3L1-206	ENST00000416651	TRIM37	O94972	964 aa		13.38	□□□□□ -0.27
NIF3L1-206	ENST00000416651	NWD2	Q9ULI1	1742 aa		13.38	□□□□□ -0.27
NIF3L1-206	ENST00000416651	PRAG1	Q86YV5	1406 aa		13.38	□□□□□ -0.27
NIF3L1-206	ENST00000416651	POTEB3	A0JP26	581 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms