RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-206ENST00000416651 AEBP2Q6ZN18 517 aaPredicted RBP29.96■■■□□ 2.39
NIF3L1-206ENST00000416651 CHIC1Q5VXU3 224 aa28.07■■■□□ 2.08
NIF3L1-206ENST00000416651 SENP3Q9H4L4 574 aaPredicted RBP25.61■■□□□ 1.69
NIF3L1-206ENST00000416651 PHF23Q9BUL5 403 aaPredicted RBP25.25■■□□□ 1.63
NIF3L1-206ENST00000416651 FOXD1Q16676 465 aa23.93■■□□□ 1.42
NIF3L1-206ENST00000416651 POTEDQ86YR6 584 aa22.66■■□□□ 1.22
NIF3L1-206ENST00000416651 NISCHQ9Y2I1 1504 aa22.59■■□□□ 1.21
NIF3L1-206ENST00000416651 MSH5O43196 834 aa22.53■■□□□ 1.2
NIF3L1-206ENST00000416651 PIAS4Q8N2W9 510 aaPredicted RBP22.27■■□□□ 1.16
NIF3L1-206ENST00000416651 PLPPR3Q6T4P5 718 aa22.26■■□□□ 1.15
NIF3L1-206ENST00000416651 PPP6R1Q9UPN7 881 aa22.09■■□□□ 1.13
NIF3L1-206ENST00000416651 ADRA2BP18089 450 aa22■■□□□ 1.11
NIF3L1-206ENST00000416651 ABCC9O60706 1549 aa21.26■□□□□ 0.99
NIF3L1-206ENST00000416651 DNAJC5BQ9UF47 199 aa20.65■□□□□ 0.9
NIF3L1-206ENST00000416651 CCDC180Q9P1Z9 1646 aa20.42■□□□□ 0.86
NIF3L1-206ENST00000416651 MAPK8IP2Q13387 824 aaPredicted RBP20.34■□□□□ 0.85
NIF3L1-206ENST00000416651 DMRT2Q9Y5R5 561 aa20.24■□□□□ 0.83
NIF3L1-206ENST00000416651 SCAF1Q9H7N4 1312 aaKnown RBP20.13■□□□□ 0.81
NIF3L1-206ENST00000416651 RB1CC1Q8TDY2 1594 aa19.76■□□□□ 0.75
NIF3L1-206ENST00000416651 PABPN1Q86U42 306 aaKnown RBP eCLIP19.76■□□□□ 0.75
NIF3L1-206ENST00000416651 CACNB1Q02641 598 aaPredicted RBP19.61■□□□□ 0.73
NIF3L1-206ENST00000416651 DCAF8L1A6NGE4 600 aa19.49■□□□□ 0.71
NIF3L1-206ENST00000416651 PPP4R3CPQ6ZMV5 832 aa19.47■□□□□ 0.71
NIF3L1-206ENST00000416651 UNC13AQ9UPW8 1703 aa19.46■□□□□ 0.71
NIF3L1-206ENST00000416651 NACADO15069 1562 aa19.46■□□□□ 0.71
NIF3L1-206ENST00000416651 DCAF8L2P0C7V8 631 aa19.46■□□□□ 0.71
NIF3L1-206ENST00000416651 BICRAQ9NZM4 1560 aa19.39■□□□□ 0.69
NIF3L1-206ENST00000416651 HOXD11P31277 338 aaPredicted RBP19.35■□□□□ 0.69
NIF3L1-206ENST00000416651 DNAJC5Q9H3Z4 198 aa19.22■□□□□ 0.67
NIF3L1-206ENST00000416651 CNKSR2Q8WXI2 1034 aa19.19■□□□□ 0.66
NIF3L1-206ENST00000416651 RNF39Q9H2S5 420 aa19.19■□□□□ 0.66
NIF3L1-206ENST00000416651 CECR2Q9BXF3 1484 aa19.13■□□□□ 0.65
NIF3L1-206ENST00000416651 RNF216Q9NWF9 866 aaPredicted RBP19.11■□□□□ 0.65
NIF3L1-206ENST00000416651 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
NIF3L1-206ENST00000416651 MYO15BQ96JP2 1530 aa18.91■□□□□ 0.62
NIF3L1-206ENST00000416651 C1QBPQ07021 282 aaKnown RBP18.89■□□□□ 0.61
NIF3L1-206ENST00000416651 EIF4G1Q04637 1599 aaKnown RBP18.88■□□□□ 0.61
NIF3L1-206ENST00000416651 SCRIBQ14160 1630 aa18.75■□□□□ 0.59
NIF3L1-206ENST00000416651 SHROOM4Q9ULL8 1493 aa18.73■□□□□ 0.59
NIF3L1-206ENST00000416651 NCBP3Q53F19 620 aaKnown RBP18.6■□□□□ 0.57
NIF3L1-206ENST00000416651 ZCCHC6Q5VYS8 1495 aaKnown RBP18.58■□□□□ 0.56
NIF3L1-206ENST00000416651 DCAF1Q9Y4B6 1507 aa18.49■□□□□ 0.55
NIF3L1-206ENST00000416651 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.47■□□□□ 0.55
NIF3L1-206ENST00000416651 CUX2O14529 1486 aa18.39■□□□□ 0.53
NIF3L1-206ENST00000416651 NPM3O75607 178 aaKnown RBP18.32■□□□□ 0.52
NIF3L1-206ENST00000416651 ERCC6Q03468 1493 aa18.26■□□□□ 0.51
NIF3L1-206ENST00000416651 TRIM41Q8WV44 630 aa18.2■□□□□ 0.5
NIF3L1-206ENST00000416651 NESP48681 1621 aa18.14■□□□□ 0.49
NIF3L1-206ENST00000416651 NCAPD3P42695 1498 aa18.04■□□□□ 0.48
NIF3L1-206ENST00000416651 U3KPZ7 1027 aaPredicted RBP18.01■□□□□ 0.47
NIF3L1-206ENST00000416651 THOC2Q8NI27 1593 aaKnown RBP17.96■□□□□ 0.47
NIF3L1-206ENST00000416651 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
NIF3L1-206ENST00000416651 CAPN15O75808 1086 aa17.89■□□□□ 0.45
NIF3L1-206ENST00000416651 SPINK5Q9NQ38 1064 aaPredicted RBP17.89■□□□□ 0.45
NIF3L1-206ENST00000416651 DSG3P32926 999 aa17.85■□□□□ 0.45
NIF3L1-206ENST00000416651 SMARCA2P51531 1590 aa17.85■□□□□ 0.45
NIF3L1-206ENST00000416651 KIF21AQ7Z4S6 1674 aa17.8■□□□□ 0.44
NIF3L1-206ENST00000416651 HMGXB3Q12766 1538 aa17.79■□□□□ 0.44
NIF3L1-206ENST00000416651 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
NIF3L1-206ENST00000416651 POTEHQ6S545 545 aa17.69■□□□□ 0.42
NIF3L1-206ENST00000416651 BAZ1BQ9UIG0 1483 aaKnown RBP17.69■□□□□ 0.42
NIF3L1-206ENST00000416651 LAMC3Q9Y6N6 1575 aa17.67■□□□□ 0.42
NIF3L1-206ENST00000416651 KCNA4P22459 653 aa17.67■□□□□ 0.42
NIF3L1-206ENST00000416651 SLC4A2P04920 1241 aa17.61■□□□□ 0.41
NIF3L1-206ENST00000416651 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
NIF3L1-206ENST00000416651 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.41
NIF3L1-206ENST00000416651 MRC2Q9UBG0 1479 aa17.54■□□□□ 0.4
NIF3L1-206ENST00000416651 WDR62O43379 1518 aa17.52■□□□□ 0.39
NIF3L1-206ENST00000416651 TRHP20396 242 aaPredicted RBP17.51■□□□□ 0.39
NIF3L1-206ENST00000416651 PEG3Q9GZU2 1588 aa17.51■□□□□ 0.39
NIF3L1-206ENST00000416651 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
NIF3L1-206ENST00000416651 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
NIF3L1-206ENST00000416651 CADPSQ9ULU8 1353 aa17.48■□□□□ 0.39
NIF3L1-206ENST00000416651 APLP2Q06481 763 aa17.47■□□□□ 0.39
NIF3L1-206ENST00000416651 ABCB7O75027 752 aa17.44■□□□□ 0.38
NIF3L1-206ENST00000416651 ZNF219Q9P2Y4 722 aaPredicted RBP17.43■□□□□ 0.38
NIF3L1-206ENST00000416651 RIMBP3CA6NJZ7 1639 aa17.42■□□□□ 0.38
NIF3L1-206ENST00000416651 RIMBP3BA6NNM3 1639 aa17.42■□□□□ 0.38
NIF3L1-206ENST00000416651 RIMBP3Q9UFD9 1639 aa17.42■□□□□ 0.38
NIF3L1-206ENST00000416651 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.37■□□□□ 0.37
NIF3L1-206ENST00000416651 HNRNPUL2Q1KMD3 747 aaKnown RBP17.37■□□□□ 0.37
NIF3L1-206ENST00000416651 CEP164Q9UPV0 1460 aa17.32■□□□□ 0.36
NIF3L1-206ENST00000416651 FANCD2Q9BXW9 1451 aa17.3■□□□□ 0.36
NIF3L1-206ENST00000416651 ARHGEF11O15085 1522 aa17.27■□□□□ 0.36
NIF3L1-206ENST00000416651 URB2Q14146 1524 aaKnown RBP17.26■□□□□ 0.35
NIF3L1-206ENST00000416651 WIZO95785 1651 aa17.26■□□□□ 0.35
NIF3L1-206ENST00000416651 SAMD1Q6SPF0 538 aaPredicted RBP17.25■□□□□ 0.35
NIF3L1-206ENST00000416651 CYB5RLQ6IPT4 315 aa17.24■□□□□ 0.35
NIF3L1-206ENST00000416651 ZNF608Q9ULD9 1512 aaPredicted RBP17.2■□□□□ 0.34
NIF3L1-206ENST00000416651 CFTRP13569 1480 aa17.14■□□□□ 0.33
NIF3L1-206ENST00000416651 ARAP1Q96P48 1450 aa17.11■□□□□ 0.33
NIF3L1-206ENST00000416651 RBM42Q9BTD8 480 aaKnown RBP17.04■□□□□ 0.32
NIF3L1-206ENST00000416651 CHD1O14646 1710 aa16.99■□□□□ 0.31
NIF3L1-206ENST00000416651 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
NIF3L1-206ENST00000416651 EIF4G3O43432 1585 aaKnown RBP16.97■□□□□ 0.31
NIF3L1-206ENST00000416651 AQRO60306 1485 aaKnown RBP eCLIP16.95■□□□□ 0.3
NIF3L1-206ENST00000416651 MYCNP04198 464 aaPredicted RBP16.95■□□□□ 0.3
NIF3L1-206ENST00000416651 POLA2Q14181 598 aa16.95■□□□□ 0.3
NIF3L1-206ENST00000416651 FBLN2P98095 1184 aa16.93■□□□□ 0.3
NIF3L1-206ENST00000416651 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 682.4 ms